Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8194304.1

Orthogroup ID

OG0007262

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 639

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8194304.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

gccgcccagttccaggacgcgccgctcgagacggtgatcaggcctctgcttcagttcttgcgcgacaccaactcctccttcttcatcaacgtctacccctacaacctctaccggctccggagcgagattccgatcgggttccctctctttcaggagcacccgttcagtttccgagacgacatggccaccggcgtgcgctaccggaatctcttcgacatgatggtcgacgccgtcatctccgccatggccgtcgccggacacgagaacattccgctgatcgtgacggagacgggttggcccagctccagcaccgacccgagagaagccgacgcgaacccggtttacgcggagctctacatcaaggggctattgggccatctgaggtcgggtcggggcacgccgctccgaaaagaaggggtgcctctggtttacatctatgagctgattgataagcaagtgaggcagggacgcaactggggaattctttttccgaatatgaccaagaagtacaagagcattgactacagctctggctctgatagcgttcttggggatttcggattcttgaagatggtggttggtcaattcttggtctttgctttcctcttgcgtggtaatgctgctatttctctgctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0009505 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

212

Amino Acids

23.94

Weight (kDa)

7.08

Isoelectric Point (pI)

32.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55780
fragaria_vesca	FvH4_6g52380 FvH4_7g23880
malus_domestica	MD01G1145800.v1.1 MD07G1213000.v1.1
prunus_persica	Prupe.2G245200_v2.0.a1
pyrus_communis	pycom01g16530 pycom07g19580
rosa_chinensis	RchiOBHm_Chr1g0369251
rosa_laevigata	RLG00000027143
rosa_multiflora	Rmu_co8194304.1_g000001 Rmu_sc0000873.1_g000020 Rmu_sc0006373.1_g000018 Rmu_sc0030627.1_g000001 Rmu_sc0035652.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287820
rosa_rugosa	Rorug01G0349300
rosa_samantha	Rh1BG319900 Rh1CG333800 Rh1DG350500 Rh3AG310300 Rh3BG346500 Rh3CG268000 Rh3DG345600
rosa_wichuraiana	Rw1G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
AccB1I	GGYRCC	1 cut(s)	418
AccBSI	CCGCTC	2 cut(s)	25, 403
AccI	GTMKAC	2 cut(s)	93, 225
AccII	CGCG	4 cut(s)	20, 63, 332, 347
AccIII	TCCGGA	1 cut(s)	117
AciI	CCGC	6 cut(s)	3, 23, 240, 272, 347, 401
AcoI	YGGCCR	2 cut(s)	183, 246
AcsI	RAATTY	1 cut(s)	480
AcuI	CTGAAG	1 cut(s)	35
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	1 cut(s)	13
AgsI	TTSAA	1 cut(s)	568
AjnI	CCWGG	1 cut(s)	12
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AleI	CACNNNNGTG	1 cut(s)	191
AloI	GAACNNNNNNTCC	2 cut(s)	146, 178
AluBI	AGCT	4 cut(s)	303, 352, 442, 528
AluI	AGCT	4 cut(s)	303, 352, 442, 528
Alw21I	GWGCWC	2 cut(s)	159, 354
Alw26I	GTCTC	3 cut(s)	23, 168, 281
Ama87I	CYCGRG	2 cut(s)	26, 316
Aor13HI	TCCGGA	1 cut(s)	117
AoxI	GGCC	5 cut(s)	41, 183, 246, 296, 373
ApeKI	GCWGC	1 cut(s)	620
ApoI	RAATTY	1 cut(s)	480
Asp700I	GAANNNNTTC	1 cut(s)	209
AspLEI	GCGC	3 cut(s)	22, 63, 198
AspS9I	GGNCC	2 cut(s)	297, 373
AsuC2I	CCSGG	1 cut(s)	338
AsuHPI	GGTGA	1 cut(s)	46
AvaI	CYCGRG	2 cut(s)	26, 316
BaeGI	GKGCMC	1 cut(s)	398
BalI	TGGCCA	1 cut(s)	185
BanI	GGYRCC	1 cut(s)	418
BanII	GRGCYC	1 cut(s)	354
BauI	CACGAG	1 cut(s)	260
Bbv12I	GWGCWC	2 cut(s)	159, 354
BbvI	GCAGC	1 cut(s)	607
BccI	CCATC	3 cut(s)	214, 384, 565
BceAI	ACGGC	2 cut(s)	215, 233
BciT130I	CCWGG	1 cut(s)	14
BclI	TGATCA	1 cut(s)	36
BcnI	CCSGG	1 cut(s)	338
BcoDI	GTCTC	3 cut(s)	23, 168, 281
BfaI	CTAG	1 cut(s)	637
BfmI	CTRYAG	1 cut(s)	523
BisI	GCNGC	4 cut(s)	3, 23, 401, 621
BlsI	GCNGC	4 cut(s)	4, 24, 402, 622
Bme1390I	CCNGG	2 cut(s)	14, 338
BmeT110I	CYCGRG	2 cut(s)	26, 316
BmgT120I	GGNCC	2 cut(s)	297, 373
BmiI	GGNNCC	3 cut(s)	116, 140, 420
BmrFI	CCNGG	2 cut(s)	14, 338
BmrI	ACTGGG	1 cut(s)	484
BmuI	ACTGGG	1 cut(s)	484
BpmI	CTGGAG	1 cut(s)	289
BpuMI	CCSGG	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	131
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	243
BsaWI	WCCGGW	2 cut(s)	117, 201
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 146, 176
Bsc4I	CCNNNNNNNGG	1 cut(s)	13
Bse118I	RCCGGY	2 cut(s)	111, 188
Bse1I	ACTGG	2 cut(s)	7, 479
Bse8I	GATNNNNATC	1 cut(s)	131
BseAI	TCCGGA	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	243
BseJI	GATNNNNATC	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	13
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	2 cut(s)	7, 479
BseRI	GAGGAG	1 cut(s)	64
BseSI	GKGCMC	1 cut(s)	398
BseXI	GCAGC	1 cut(s)	607
BseYI	CCCAGC	1 cut(s)	299
Bsh1236I	CGCG	4 cut(s)	20, 63, 332, 347
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	5 cut(s)	43, 185, 248, 298, 375
BshNI	GGYRCC	1 cut(s)	418
BsiEI	CGRYCG	1 cut(s)	135
BsiHKAI	GWGCWC	2 cut(s)	159, 354
BsiHKCI	CYCGRG	2 cut(s)	26, 316
BsiSI	CCGG	6 cut(s)	112, 118, 189, 202, 255, 338
BslFI	GGGAC	1 cut(s)	480
BslI	CCNNNNNNNGG	1 cut(s)	13
BsmAI	GTCTC	3 cut(s)	23, 168, 281
BsmBI	CGTCTC	3 cut(s)	23, 168, 281
BsmFI	GGGAC	1 cut(s)	480
BsnI	GGCC	5 cut(s)	43, 185, 248, 298, 375
BsoBI	CYCGRG	2 cut(s)	26, 316
Bsp1286I	GDGCHC	3 cut(s)	159, 354, 398
Bsp13I	TCCGGA	1 cut(s)	117
Bsp143I	GATC	3 cut(s)	36, 132, 276
Bsp19I	CCATGG	1 cut(s)	243
BspACI	CCGC	6 cut(s)	3, 23, 240, 272, 347, 401
BspANI	GGCC	5 cut(s)	43, 185, 248, 298, 375
BspCNI	CTCAG	1 cut(s)	372
BspEI	TCCGGA	1 cut(s)	117
BspFNI	CGCG	4 cut(s)	20, 63, 332, 347
BspLI	GGNNCC	3 cut(s)	116, 140, 420
BspT107I	GGYRCC	1 cut(s)	418
BsrBI	CCGCTC	2 cut(s)	25, 403
BsrFI	RCCGGY	2 cut(s)	111, 188
BsrI	ACTGG	2 cut(s)	7, 479
BssAI	RCCGGY	2 cut(s)	111, 188
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	3 cut(s)	36, 132, 276
BssNI	GRCGYC	1 cut(s)	228
BssSI	CACGAG	1 cut(s)	260
BssT1I	CCWWGG	1 cut(s)	243
Bst2BI	CACGAG	1 cut(s)	260
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	1 cut(s)	215
BstACI	GRCGYC	1 cut(s)	228
BstC8I	GCNNGC	2 cut(s)	194, 398
BstDEI	CTNAG	1 cut(s)	380
BstDSI	CCRYGG	1 cut(s)	243
BstFNI	CGCG	4 cut(s)	20, 63, 332, 347
BstHHI	GCGC	3 cut(s)	22, 63, 198
BstKTI	GATC	3 cut(s)	39, 135, 279
BstMAI	GTCTC	3 cut(s)	23, 168, 281
BstMBI	GATC	3 cut(s)	36, 132, 276
BstMCI	CGRYCG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	2 cut(s)	460, 540
BstNI	CCWGG	1 cut(s)	14
BstSCI	CCNGG	2 cut(s)	12, 336
BstSFI	CTRYAG	1 cut(s)	523
BstSLI	GKGCMC	1 cut(s)	398
BstUI	CGCG	4 cut(s)	20, 63, 332, 347
BstV1I	GCAGC	1 cut(s)	607
BsuRI	GGCC	5 cut(s)	43, 185, 248, 298, 375
BtgI	CCRYGG	1 cut(s)	243
Cac8I	GCNNGC	2 cut(s)	194, 398
CfoI	GCGC	3 cut(s)	22, 63, 198
Cfr10I	RCCGGY	2 cut(s)	111, 188
Cfr13I	GGNCC	2 cut(s)	297, 373
CseI	GACGC	4 cut(s)	26, 236, 338, 477
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	3 cut(s)	181, 217, 244
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	1 cut(s)	380
DpnI	GATC	3 cut(s)	38, 134, 278
DpnII	GATC	3 cut(s)	36, 132, 276
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
EaeI	YGGCCR	2 cut(s)	183, 246
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
EciI	GGCGGA	1 cut(s)	229
Ecl136II	GAGCTC	1 cut(s)	352
Eco130I	CCWWGG	1 cut(s)	243
Eco147I	AGGCCT	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	354
Eco53kI	GAGCTC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	35
Eco88I	CYCGRG	2 cut(s)	26, 316
EcoICRI	GAGCTC	1 cut(s)	352
EcoRI	GAATTC	1 cut(s)	480
EcoRII	CCWGG	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	243
Esp3I	CGTCTC	3 cut(s)	23, 168, 281
FaeI	CATG	3 cut(s)	184, 220, 247
FaiI	YATR	5 cut(s)	182, 218, 245, 438, 497
FaqI	GGGAC	1 cut(s)	480
FatI	CATG	3 cut(s)	180, 216, 243
FbaI	TGATCA	1 cut(s)	36
FblI	GTMKAC	2 cut(s)	93, 225
Fnu4HI	GCNGC	4 cut(s)	3, 23, 401, 621
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	4 cut(s)	3, 23, 401, 621
FspBI	CTAG	1 cut(s)	637
GlaI	GCGC	3 cut(s)	21, 62, 197
GluI	GCNGC	4 cut(s)	3, 23, 401, 621
GsaI	CCCAGC	1 cut(s)	303
GsuI	CTGGAG	1 cut(s)	289
HaeIII	GGCC	5 cut(s)	43, 185, 248, 298, 375
HapII	CCGG	6 cut(s)	112, 118, 189, 202, 255, 338
HgaI	GACGC	4 cut(s)	26, 236, 338, 477
HhaI	GCGC	3 cut(s)	22, 63, 198
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	3 cut(s)	184, 220, 247
Hin6I	GCGC	3 cut(s)	20, 61, 196
HinP1I	GCGC	3 cut(s)	20, 61, 196
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	3 cut(s)	127, 205, 561
HpaII	CCGG	6 cut(s)	112, 118, 189, 202, 255, 338
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	4 cut(s)	94, 226, 343, 430
Hpy188I	TCNGA	7 cut(s)	132, 173, 381, 407, 492, 538, 560
Hpy188III	TCNNGA	5 cut(s)	28, 118, 152, 280, 565
Hpy8I	GTNNAC	4 cut(s)	94, 226, 343, 430
Hpy99I	CGWCG	3 cut(s)	230, 254, 332
HpyAV	CCTTC	2 cut(s)	88, 407
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	1 cut(s)	90
HpyF10VI	GCNNNNNNNGC	2 cut(s)	460, 540
HpyF3I	CTNAG	1 cut(s)	380
HpySE526I	ACGT	1 cut(s)	90
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	3 cut(s)	184, 220, 247
HspAI	GCGC	3 cut(s)	20, 61, 196
Kpn2I	TCCGGA	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	3 cut(s)	36, 132, 276
LmnI	GCTCC	6 cut(s)	120, 120, 154, 308, 349, 408
Lsp1109I	GCAGC	1 cut(s)	607
MaeI	CTAG	1 cut(s)	637
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	3 cut(s)	38, 134, 278
MbiI	CCGCTC	2 cut(s)	25, 403
MboI	GATC	3 cut(s)	36, 132, 276
MboII	GAAGA	3 cut(s)	73, 202, 580
MhlI	GDGCHC	3 cut(s)	159, 354, 398
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	2 cut(s)	480, 584
MluNI	TGGCCA	1 cut(s)	185
MnlI	CCTC	8 cut(s)	54, 85, 116, 153, 375, 432, 453, 614
Mox20I	TGGCCA	1 cut(s)	185
MroI	TCCGGA	1 cut(s)	117
MroXI	GAANNNNTTC	1 cut(s)	209
MscI	TGGCCA	1 cut(s)	185
MslI	CAYNNNNRTG	1 cut(s)	191
Msp20I	TGGCCA	1 cut(s)	185
MspA1I	CMGCKG	1 cut(s)	274
MspI	CCGG	6 cut(s)	112, 118, 189, 202, 255, 338
MspR9I	CCNGG	2 cut(s)	14, 338
MvaI	CCWGG	1 cut(s)	14
MvnI	CGCG	4 cut(s)	20, 63, 332, 347
MwoI	GCNNNNNNNGC	2 cut(s)	460, 540
NciI	CCSGG	1 cut(s)	338
NcoI	CCATGG	1 cut(s)	243
NdeII	GATC	3 cut(s)	36, 132, 276
NlaIII	CATG	3 cut(s)	184, 220, 247
NlaIV	GGNNCC	3 cut(s)	116, 140, 420
NmuCI	GTSAC	1 cut(s)	280
OliI	CACNNNNGTG	1 cut(s)	191
PaeR7I	CTCGAG	1 cut(s)	26
PceI	AGGCCT	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	2 cut(s)	24, 258
PdmI	GAANNNNTTC	1 cut(s)	209
PfeI	GAWTC	3 cut(s)	127, 205, 561
PflFI	GACNNNGTC	1 cut(s)	230
PfoI	TCCNGGA	1 cut(s)	12
PkrI	GCNGC	4 cut(s)	4, 24, 402, 622
Ple19I	CGATCG	1 cut(s)	135
Psp124BI	GAGCTC	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	12
PspFI	CCCAGC	1 cut(s)	299
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	3 cut(s)	116, 140, 420
PspPI	GGNCC	2 cut(s)	297, 373
PsrI	GAACNNNNNNTAC	2 cut(s)	326, 358
PsyI	GACNNNGTC	1 cut(s)	230
PvuI	CGATCG	1 cut(s)	135
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
RseI	CAYNNNNRTG	1 cut(s)	191
SacI	GAGCTC	1 cut(s)	354
SalI	GTCGAC	1 cut(s)	224
SatI	GCNGC	4 cut(s)	3, 23, 401, 621
Sau3AI	GATC	3 cut(s)	36, 132, 276
Sau96I	GGNCC	2 cut(s)	297, 373
ScrFI	CCNGG	2 cut(s)	14, 338
SduI	GDGCHC	3 cut(s)	159, 354, 398
SetI	ASST	7 cut(s)	93, 108, 305, 354, 386, 444, 530
SfcI	CTRYAG	1 cut(s)	523
Sfr274I	CTCGAG	1 cut(s)	26
SgrAI	CRCCGGYG	1 cut(s)	188
SlaI	CTCGAG	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	2 cut(s)	480, 584
SseBI	AGGCCT	1 cut(s)	43
SsiI	CCGC	6 cut(s)	3, 23, 240, 272, 347, 401
SspMI	CTAG	1 cut(s)	637
SstI	GAGCTC	1 cut(s)	354
StuI	AGGCCT	1 cut(s)	43
StyD4I	CCNGG	2 cut(s)	12, 336
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	3 cut(s)	27, 213, 225
TasI	AATT	2 cut(s)	480, 584
TatI	WGTACW	1 cut(s)	507
TauI	GCSGC	3 cut(s)	5, 25, 403
TfiI	GAWTC	3 cut(s)	127, 205, 561
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	1 cut(s)	620
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	1 cut(s)	73
TspGWI	ACGGA	1 cut(s)	299
Tth111I	GACNNNGTC	1 cut(s)	230
XapI	RAATTY	1 cut(s)	480
XhoI	CTCGAG	1 cut(s)	26
XmiI	GTMKAC	2 cut(s)	93, 225
XmnI	GAANNNNTTC	1 cut(s)	209
XspI	CTAG	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.