Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0007262

Physical Location & Seq

Genomic Coordinates Reverse (-)

39014581 .. 39017773

Gene Structure 3193 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG310300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGTCGACGCCGTCATCTCCGCCATGGCCATCGCCGGACACAAGAACATTTCGTTGATTGTGACAGAGACGGGTTGGCCCAGCTCCAGCACTGACCCGAGAGAAGCTGACACAAACCCGGGTTACGCGGAGCTCTACATCAAGGGGCTATTGGGCCATCTGAGGTCGTGTCGGGGAAGGGGCAAAAAAGAAGGGGTACCTTTGGTTTACATCTATGAGCGGAGTGAACCAACCTTCTCATTGGCTTGTGAAGCATCATCAACAAACTTCTTGAAACACTTAACCATCAGTGTCAAAGGAACATCAACAAACCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0009505 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

105

Amino Acids

11.31

Weight (kDa)

7.8

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	1 - 73	4.6e-07	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55780
fragaria_vesca	FvH4_6g52380 FvH4_7g23880
malus_domestica	MD01G1145800.v1.1 MD07G1213000.v1.1
prunus_persica	Prupe.2G245200_v2.0.a1
pyrus_communis	pycom01g16530 pycom07g19580
rosa_chinensis	RchiOBHm_Chr1g0369251
rosa_laevigata	RLG00000027143
rosa_multiflora	Rmu_co8194304.1_g000001 Rmu_sc0000873.1_g000020 Rmu_sc0006373.1_g000018 Rmu_sc0030627.1_g000001 Rmu_sc0035652.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287820
rosa_rugosa	Rorug01G0349300
rosa_samantha	Rh1BG319900 Rh1CG333800 Rh1DG350500 Rh3AG310300 Rh3BG346500 Rh3CG268000 Rh3DG345600
rosa_wichuraiana	Rw1G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	196
AccB1I	GGYRCC	1 cut(s)	196
AccBSI	CCGCTC	1 cut(s)	220
AccI	GTMKAC	1 cut(s)	6
AccII	CGCG	1 cut(s)	128
AciI	CCGC	3 cut(s)	21, 128, 220
AcoI	YGGCCR	1 cut(s)	27
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	1 cut(s)	198
AgsI	TTSAA	1 cut(s)	274
AluBI	AGCT	3 cut(s)	84, 107, 133
AluI	AGCT	3 cut(s)	84, 107, 133
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	1 cut(s)	62
Ama87I	CYCGRG	2 cut(s)	97, 118
AoxI	GGCC	3 cut(s)	27, 77, 154
Asp718I	GGTACC	1 cut(s)	196
AspS9I	GGNCC	2 cut(s)	78, 154
AsuC2I	CCSGG	2 cut(s)	119, 120
AvaI	CYCGRG	2 cut(s)	97, 118
BalI	TGGCCA	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	196
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	135
BccI	CCATC	3 cut(s)	38, 165, 293
BcnI	CCSGG	2 cut(s)	119, 120
BcoDI	GTCTC	1 cut(s)	62
Bme1390I	CCNGG	2 cut(s)	119, 120
BmeT110I	CYCGRG	2 cut(s)	97, 118
BmgT120I	GGNCC	2 cut(s)	78, 154
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	2 cut(s)	119, 120
BmsI	GCATC	1 cut(s)	263
BpmI	CTGGAG	1 cut(s)	70
BpuMI	CCSGG	2 cut(s)	119, 120
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	24, 118
BseDI	CCNNGG	2 cut(s)	24, 118
BseMII	CTCAG	1 cut(s)	152
BseYI	CCCAGC	1 cut(s)	80
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	3 cut(s)	29, 79, 156
BshNI	GGYRCC	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	135
BsiHKCI	CYCGRG	2 cut(s)	97, 118
BsiSI	CCGG	2 cut(s)	36, 119
BsmAI	GTCTC	1 cut(s)	62
BsmBI	CGTCTC	1 cut(s)	62
BsnI	GGCC	3 cut(s)	29, 79, 156
BsoBI	CYCGRG	2 cut(s)	97, 118
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	3 cut(s)	21, 128, 220
BspANI	GGCC	3 cut(s)	29, 79, 156
BspCNI	CTCAG	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	1 cut(s)	198
BspT107I	GGYRCC	1 cut(s)	196
BsrBI	CCGCTC	1 cut(s)	220
BssECI	CCNNGG	2 cut(s)	24, 118
BssNI	GRCGYC	1 cut(s)	9
BssT1I	CCWWGG	1 cut(s)	24
BstACI	GRCGYC	1 cut(s)	9
BstDEI	CTNAG	1 cut(s)	161
BstDSI	CCRYGG	1 cut(s)	24
BstFNI	CGCG	1 cut(s)	128
BstMAI	GTCTC	1 cut(s)	62
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstSCI	CCNGG	2 cut(s)	117, 118
BstUI	CGCG	1 cut(s)	128
BsuRI	GGCC	3 cut(s)	29, 79, 156
BtgI	CCRYGG	1 cut(s)	24
BtgZI	GCGATG	1 cut(s)	16
BtsIMutI	CAGTG	2 cut(s)	90, 295
Cfr13I	GGNCC	2 cut(s)	78, 154
Cfr9I	CCCGGG	1 cut(s)	118
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	197
CviAII	CATG	2 cut(s)	25, 315
CviJI	RGCY	8 cut(s)	29, 79, 84, 107, 133, 148, 156, 245
CviKI_1	RGCY	8 cut(s)	29, 79, 84, 107, 133, 148, 156, 245
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	1 cut(s)	161
EaeI	YGGCCR	1 cut(s)	27
EciI	GGCGGA	1 cut(s)	10
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	133
Eco88I	CYCGRG	2 cut(s)	97, 118
EcoICRI	GAGCTC	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	24
Esp3I	CGTCTC	1 cut(s)	62
FaeI	CATG	2 cut(s)	28, 318
FaiI	YATR	3 cut(s)	26, 216, 316
FatI	CATG	2 cut(s)	24, 314
FblI	GTMKAC	1 cut(s)	6
FriOI	GRGCYC	1 cut(s)	135
GsaI	CCCAGC	1 cut(s)	84
GsuI	CTGGAG	1 cut(s)	70
HaeIII	GGCC	3 cut(s)	29, 79, 156
HapII	CCGG	2 cut(s)	36, 119
HgaI	GACGC	1 cut(s)	17
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	2 cut(s)	28, 318
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HpaII	CCGG	2 cut(s)	36, 119
Hpy166II	GTNNAC	3 cut(s)	7, 208, 227
Hpy188I	TCNGA	1 cut(s)	162
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	3 cut(s)	7, 208, 227
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	3 cut(s)	171, 185, 244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	1 cut(s)	161
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	2 cut(s)	28, 318
KpnI	GGTACC	1 cut(s)	200
LmnI	GCTCC	2 cut(s)	89, 130
LpnPI	CCDG	4 cut(s)	49, 94, 100, 132
LweI	GCATC	1 cut(s)	263
MaeIII	GTNAC	2 cut(s)	61, 122
MbiI	CCGCTC	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	135
MlsI	TGGCCA	1 cut(s)	29
MluNI	TGGCCA	1 cut(s)	29
MnlI	CCTC	1 cut(s)	156
Mox20I	TGGCCA	1 cut(s)	29
MscI	TGGCCA	1 cut(s)	29
MseI	TTAA	1 cut(s)	281
Msp20I	TGGCCA	1 cut(s)	29
MspI	CCGG	2 cut(s)	36, 119
MspR9I	CCNGG	2 cut(s)	119, 120
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	251
NciI	CCSGG	2 cut(s)	119, 120
NcoI	CCATGG	1 cut(s)	24
NlaIII	CATG	2 cut(s)	28, 318
NlaIV	GGNNCC	1 cut(s)	198
NmuCI	GTSAC	1 cut(s)	61
PflFI	GACNNNGTC	1 cut(s)	11
Psp124BI	GAGCTC	1 cut(s)	135
PspFI	CCCAGC	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	2 cut(s)	78, 154
PsyI	GACNNNGTC	1 cut(s)	11
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
SacI	GAGCTC	1 cut(s)	135
SalI	GTCGAC	1 cut(s)	5
SaqAI	TTAA	1 cut(s)	281
Sau96I	GGNCC	2 cut(s)	78, 154
ScrFI	CCNGG	2 cut(s)	119, 120
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	6 cut(s)	86, 109, 135, 167, 202, 236
SfaNI	GCATC	1 cut(s)	263
SmaI	CCCGGG	1 cut(s)	120
SsiI	CCGC	3 cut(s)	21, 128, 220
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	2 cut(s)	117, 118
StyI	CCWWGG	1 cut(s)	24
TaqI	TCGA	1 cut(s)	6
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TscAI	CASTG	2 cut(s)	97, 295
TseFI	GTSAC	1 cut(s)	61
Tsp45I	GTSAC	1 cut(s)	61
TspMI	CCCGGG	1 cut(s)	118
TspRI	CASTG	2 cut(s)	97, 295
Tth111I	GACNNNGTC	1 cut(s)	11
XmaI	CCCGGG	1 cut(s)	118
XmiI	GTMKAC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.