Rmu_sc0000873.1_g000020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000873.1
OG0007262
Physical Location & Seq
Reverse (-)
84464 .. 86277
1814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000873.1_g000020.1.cds

Sequence Viewer

Length: 609 bp
atgggtggggtatgggtatacccgtgggtacccaaaaggcgatccgtgagaatccgaccgttggatcatcgtataattgtgaaaagacgatttcaaaaggcgatccccccacccgccttgcagcagcccctgtcgcgaagacctacagccggccagaccagcacaccaggtcaagcgctgcccaacctcacccagtcgctgcccagcctcacccagtcgccctccgcactactgccccagcatcagcagcccggagtcccgagcctgcccagcccacctaacgcagcaagcctacagcctacccaccagcgcccaccctcgatctcgcctgcagcctacccaccctcgatctaccagcaggtggaggaagaagaagagagaaaagaaaaaaggaagaagagagaaagaaagaaagaaaaaggaaaaaaaaagggtgactcggcccaaagaaaagaaaaaaagagagaaagatgggtgatgcctgatcggatcacgtacatgggtgatgcagcaccaactctagtagatgatgatgaatttatatactcatgcctgcaacagagactgattcgtattcgaagccatttccgaattctcgccgaaatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

23.18

Weight (kDa)

10.54

Isoelectric Point (pI)

91.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 349
Acc36I ACCTGC 1 cut(s) 349
Acc65I GGTACC 1 cut(s) 28
AccB1I GGYRCC 1 cut(s) 28
AccB7I CCANNNNNTGG 1 cut(s) 361
AccI GTMKAC 1 cut(s) 18
AccII CGCG 1 cut(s) 136
AciI CCGC 2 cut(s) 114, 225
AclWI GGATC 4 cut(s) 36, 72, 97, 497
AcoI YGGCCR 1 cut(s) 151
AcsI RAATTY 3 cut(s) 536, 591, 603
AfaI GTAC 2 cut(s) 30, 497
AfeI AGCGCT 1 cut(s) 177
AfiI CCNNNNNNNGG 3 cut(s) 61, 149, 361
AgsI TTSAA 1 cut(s) 95
AjnI CCWGG 1 cut(s) 166
Alw26I GTCTC 1 cut(s) 556
AlwI GGATC 4 cut(s) 36, 72, 97, 497
AlwNI CAGNNNCTG 3 cut(s) 130, 199, 565
Ama87I CYCGRG 1 cut(s) 259
Aor51HI AGCGCT 1 cut(s) 177
AoxI GGCC 2 cut(s) 151, 441
ApeKI GCWGC 8 cut(s) 121, 124, 178, 199, 247, 284, 332, 509
ApoI RAATTY 3 cut(s) 536, 591, 603
Asp718I GGTACC 1 cut(s) 28
AspLEI GCGC 2 cut(s) 178, 312
AspS9I GGNCC 1 cut(s) 442
AsuC2I CCSGG 1 cut(s) 252
AsuHPI GGTGA 5 cut(s) 181, 202, 446, 487, 515
AsuII TTCGAA 1 cut(s) 577
AvaI CYCGRG 1 cut(s) 259
BanI GGYRCC 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 145
BbvI GCAGC 8 cut(s) 133, 136, 165, 186, 259, 296, 344, 521
BccI CCATC 1 cut(s) 465
BciT130I CCWGG 1 cut(s) 168
BcnI CCSGG 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 556
BfaI CTAG 1 cut(s) 521
BfmI CTRYAG 3 cut(s) 144, 293, 330
BfoI RGCGCY 2 cut(s) 179, 313
BfuAI ACCTGC 1 cut(s) 349
BisI GCNGC 8 cut(s) 122, 125, 179, 200, 248, 285, 333, 510
BlsI GCNGC 8 cut(s) 123, 126, 180, 201, 249, 286, 334, 511
Bme1390I CCNGG 2 cut(s) 168, 252
BmeT110I CYCGRG 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 442
BmiI GGNNCC 1 cut(s) 30
BmrFI CCNGG 2 cut(s) 168, 252
BmrI ACTGGG 2 cut(s) 187, 208
BmsI GCATC 3 cut(s) 250, 468, 496
BmuI ACTGGG 2 cut(s) 187, 208
BpiI GAAGAC 1 cut(s) 145
Bpu14I TTCGAA 1 cut(s) 577
BpuMI CCSGG 1 cut(s) 252
BsaAI YACGTR 1 cut(s) 495
BsaJI CCNNGG 1 cut(s) 23
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 149, 361
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 2 cut(s) 193, 214
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 23
BseLI CCNNNNNNNGG 3 cut(s) 61, 149, 361
BseNI ACTGG 2 cut(s) 193, 214
BseXI GCAGC 8 cut(s) 133, 136, 165, 186, 259, 296, 344, 521
BseYI CCCAGC 3 cut(s) 203, 237, 269
Bsh1236I CGCG 1 cut(s) 136
Bsh1285I CGRYCG 1 cut(s) 59
BshFI GGCC 2 cut(s) 153, 443
BshNI GGYRCC 1 cut(s) 28
BsiEI CGRYCG 1 cut(s) 59
BsiHKCI CYCGRG 1 cut(s) 259
BsiSI CCGG 2 cut(s) 150, 252
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 3 cut(s) 61, 149, 361
BsmAI GTCTC 1 cut(s) 556
BsmFI GGGAC 1 cut(s) 242
BsnI GGCC 2 cut(s) 153, 443
BsoBI CYCGRG 1 cut(s) 259
Bsp119I TTCGAA 1 cut(s) 577
Bsp143I GATC 7 cut(s) 41, 64, 102, 321, 348, 484, 489
Bsp68I TCGCGA 1 cut(s) 136
BspACI CCGC 2 cut(s) 114, 225
BspANI GGCC 2 cut(s) 153, 443
BspFNI CGCG 1 cut(s) 136
BspLI GGNNCC 1 cut(s) 30
BspMAI CTGCAG 1 cut(s) 334
BspMI ACCTGC 1 cut(s) 349
BspPI GGATC 4 cut(s) 36, 72, 97, 497
BspT104I TTCGAA 1 cut(s) 577
BspT107I GGYRCC 1 cut(s) 28
BsrFI RCCGGY 1 cut(s) 149
BsrI ACTGG 2 cut(s) 193, 214
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 7 cut(s) 41, 64, 102, 321, 348, 484, 489
BssNAI GTATAC 1 cut(s) 19
Bst1107I GTATAC 1 cut(s) 19
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 60
Bst6I CTCTTC 2 cut(s) 369, 392
BstBAI YACGTR 1 cut(s) 495
BstBI TTCGAA 1 cut(s) 577
BstC8I GCNNGC 5 cut(s) 151, 266, 289, 330, 554
BstDSI CCRYGG 1 cut(s) 23
BstFNI CGCG 1 cut(s) 136
BstH2I RGCGCY 2 cut(s) 179, 313
BstHHI GCGC 2 cut(s) 178, 312
BstKTI GATC 7 cut(s) 44, 67, 105, 324, 351, 487, 492
BstMAI GTCTC 1 cut(s) 556
BstMBI GATC 7 cut(s) 41, 64, 102, 321, 348, 484, 489
BstMCI CGRYCG 1 cut(s) 59
BstMWI GCNNNNNNNGC 4 cut(s) 133, 159, 247, 270
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 2 cut(s) 166, 250
BstSFI CTRYAG 3 cut(s) 144, 293, 330
BstUI CGCG 1 cut(s) 136
BstV1I GCAGC 8 cut(s) 133, 136, 165, 186, 259, 296, 344, 521
BstV2I GAAGAC 1 cut(s) 145
BstZ17I GTATAC 1 cut(s) 19
BsuRI GGCC 2 cut(s) 153, 443
BtgI CCRYGG 1 cut(s) 23
BtuMI TCGCGA 1 cut(s) 136
BveI ACCTGC 1 cut(s) 349
Cac8I GCNNGC 5 cut(s) 151, 266, 289, 330, 554
CaiI CAGNNNCTG 3 cut(s) 130, 199, 565
CfoI GCGC 2 cut(s) 178, 312
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 442
CsiI ACCWGGT 1 cut(s) 166
Csp6I GTAC 2 cut(s) 29, 496
CspCI CAANNNNNGTGG 2 cut(s) 99, 134
CviAII CATG 2 cut(s) 499, 549
CviQI GTAC 2 cut(s) 29, 496
DpnI GATC 7 cut(s) 43, 66, 104, 323, 350, 486, 491
DpnII GATC 7 cut(s) 41, 64, 102, 321, 348, 484, 489
EaeI YGGCCR 1 cut(s) 151
Eam1104I CTCTTC 2 cut(s) 369, 392
EarI CTCTTC 2 cut(s) 369, 392
Eco47III AGCGCT 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 259
EcoRI GAATTC 1 cut(s) 591
EcoRII CCWGG 1 cut(s) 166
FaeI CATG 2 cut(s) 502, 552
FaiI YATR 7 cut(s) 13, 19, 74, 500, 542, 544, 550
FaqI GGGAC 1 cut(s) 242
FatI CATG 2 cut(s) 498, 548
FauI CCCGC 1 cut(s) 121
FblI GTMKAC 1 cut(s) 18
Fnu4HI GCNGC 8 cut(s) 122, 125, 179, 200, 248, 285, 333, 510
Fsp4HI GCNGC 8 cut(s) 122, 125, 179, 200, 248, 285, 333, 510
FspBI CTAG 1 cut(s) 521
GlaI GCGC 2 cut(s) 177, 311
GluI GCNGC 8 cut(s) 122, 125, 179, 200, 248, 285, 333, 510
GsaI CCCAGC 3 cut(s) 207, 241, 273
HaeII RGCGCY 2 cut(s) 179, 313
HaeIII GGCC 2 cut(s) 153, 443
HapII CCGG 2 cut(s) 150, 252
HhaI GCGC 2 cut(s) 178, 312
Hin1II CATG 2 cut(s) 502, 552
Hin6I GCGC 2 cut(s) 176, 310
HinP1I GCGC 2 cut(s) 176, 310
HinfI GANTC 4 cut(s) 51, 255, 437, 568
HpaII CCGG 2 cut(s) 150, 252
HphI GGTGA 5 cut(s) 181, 202, 446, 487, 515
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 3 cut(s) 56, 489, 590
Hpy188III TCNNGA 2 cut(s) 135, 259
Hpy8I GTNNAC 1 cut(s) 19
HpyCH4III ACNGT 1 cut(s) 60
HpyCH4IV ACGT 1 cut(s) 494
HpyCH4V TGCA 4 cut(s) 121, 332, 509, 556
HpyF10VI GCNNNNNNNGC 4 cut(s) 133, 159, 247, 270
HpySE526I ACGT 1 cut(s) 494
Hsp92II CATG 2 cut(s) 502, 552
HspAI GCGC 2 cut(s) 176, 310
KpnI GGTACC 1 cut(s) 32
KroI GCCGGC 1 cut(s) 149
KroNI GCCGGC 1 cut(s) 151
Kzo9I GATC 7 cut(s) 41, 64, 102, 321, 348, 484, 489
Lsp1109I GCAGC 8 cut(s) 133, 136, 165, 186, 259, 296, 344, 521
LweI GCATC 3 cut(s) 250, 468, 496
MabI ACCWGGT 1 cut(s) 166
MaeI CTAG 1 cut(s) 521
MaeII ACGT 1 cut(s) 494
MaeIII GTNAC 1 cut(s) 434
MalI GATC 7 cut(s) 43, 66, 104, 323, 350, 486, 491
MboI GATC 7 cut(s) 41, 64, 102, 321, 348, 484, 489
MboII GAAGA 6 cut(s) 150, 380, 383, 386, 406, 409
MluCI AATT 4 cut(s) 75, 536, 591, 603
MlyI GAGTC 2 cut(s) 264, 431
MmeI TCCRAC 2 cut(s) 42, 79
MnlI CCTC 6 cut(s) 197, 218, 232, 328, 355, 358
MroNI GCCGGC 1 cut(s) 149
MslI CAYNNNNRTG 1 cut(s) 497
MspI CCGG 2 cut(s) 150, 252
MspR9I CCNGG 2 cut(s) 168, 252
MvaI CCWGG 1 cut(s) 168
MvnI CGCG 1 cut(s) 136
MwoI GCNNNNNNNGC 4 cut(s) 133, 159, 247, 270
NaeI GCCGGC 1 cut(s) 151
NciI CCSGG 1 cut(s) 252
NdeII GATC 7 cut(s) 41, 64, 102, 321, 348, 484, 489
NgoMIV GCCGGC 1 cut(s) 149
NlaIII CATG 2 cut(s) 502, 552
NlaIV GGNNCC 1 cut(s) 30
NmeAIII GCCGAG 1 cut(s) 419
NmuCI GTSAC 1 cut(s) 434
NruI TCGCGA 1 cut(s) 136
NspV TTCGAA 1 cut(s) 577
PaqCI CACCTGC 1 cut(s) 349
PdiI GCCGGC 1 cut(s) 151
PfeI GAWTC 2 cut(s) 51, 568
PflMI CCANNNNNTGG 1 cut(s) 361
PkrI GCNGC 8 cut(s) 123, 126, 180, 201, 249, 286, 334, 511
PleI GAGTC 2 cut(s) 263, 431
PpsI GAGTC 2 cut(s) 263, 431
Ppu21I YACGTR 1 cut(s) 495
Psp6I CCWGG 1 cut(s) 166
PspFI CCCAGC 3 cut(s) 203, 237, 269
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 1 cut(s) 442
PstI CTGCAG 1 cut(s) 334
PstNI CAGNNNCTG 3 cut(s) 130, 199, 565
RruI TCGCGA 1 cut(s) 136
RsaI GTAC 2 cut(s) 30, 497
RsaNI GTAC 2 cut(s) 29, 496
RseI CAYNNNNRTG 1 cut(s) 497
SatI GCNGC 8 cut(s) 122, 125, 179, 200, 248, 285, 333, 510
Sau3AI GATC 7 cut(s) 41, 64, 102, 321, 348, 484, 489
Sau96I GGNCC 1 cut(s) 442
SchI GAGTC 2 cut(s) 264, 431
ScrFI CCNGG 2 cut(s) 168, 252
SetI ASST 6 cut(s) 145, 172, 189, 280, 363, 497
SexAI ACCWGGT 1 cut(s) 166
SfaNI GCATC 3 cut(s) 250, 468, 496
SfcI CTRYAG 3 cut(s) 144, 293, 330
SfuI TTCGAA 1 cut(s) 577
SmiMI CAYNNNNRTG 1 cut(s) 497
Sse9I AATT 4 cut(s) 75, 536, 591, 603
SsiI CCGC 2 cut(s) 114, 225
SspMI CTAG 1 cut(s) 521
StyD4I CCNGG 2 cut(s) 166, 250
TaaI ACNGT 1 cut(s) 60
TaiI ACGT 1 cut(s) 497
TaqI TCGA 3 cut(s) 320, 347, 577
TasI AATT 4 cut(s) 75, 536, 591, 603
TfiI GAWTC 2 cut(s) 51, 568
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 8 cut(s) 121, 124, 178, 199, 247, 284, 332, 509
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 1 cut(s) 549
TspGWI ACGGA 1 cut(s) 34
Van91I CCANNNNNTGG 1 cut(s) 361
XapI RAATTY 3 cut(s) 536, 591, 603
XmiI GTMKAC 1 cut(s) 18
XspI CTAG 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.