Rmu_sc0006373.1_g000018

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006373.1
OG0007262
Physical Location & Seq
Forward (+)
83882 .. 87887
4006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006373.1_g000018.1.cds

Sequence Viewer

Length: 600 bp
atggatggaaatcatggagttaatgtcaaaaatcaggggaggatcaaggataatgatgccatggagagatttaagggagaaaatgtccaaaacaagtccagattcattcctattttcactcaagaccccacccaccttgcagcagcccttgccgctaagccccacagccggccagaccagcacaccaggtcgagcgctgcccagcctcacccagtcgccctccgcactactgcccccgcatcagtagccccgcgtcccgcccctgcgcatcccacccaacgcagcaagcctgcccaccagcgcctaccctcgatctcgcctgcagcctgcccaccctcgatctaccagcaggcggaggaagaagaagagataaaagaaaaaaggaagaagagagaaagaaagaaaaaaaaggaaaaaaaaaatggtgactcggcccaaagaaaagaaaaaaagagagaaagatgggtgatgcctgatcggatcacgtacatgggtgatgcagcaccagctctagtagatgatgatgaatttatatactcatgcctgcaacagagactgattcgtattcgaagccatttccgaattcttgccggaatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.59

Weight (kDa)

10.07

Isoelectric Point (pI)

61.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 267
AccII CGCG 1 cut(s) 253
AciI CCGC 6 cut(s) 153, 223, 237, 251, 258, 353
AclWI GGATC 2 cut(s) 50, 488
AcoI YGGCCR 1 cut(s) 170
AcsI RAATTY 3 cut(s) 527, 582, 594
AfaI GTAC 1 cut(s) 488
AfeI AGCGCT 1 cut(s) 196
AfiI CCNNNNNNNGG 2 cut(s) 168, 352
AjnI CCWGG 1 cut(s) 185
AluBI AGCT 1 cut(s) 509
AluI AGCT 1 cut(s) 509
Alw26I GTCTC 1 cut(s) 547
AlwI GGATC 2 cut(s) 50, 488
AlwNI CAGNNNCTG 1 cut(s) 556
Aor51HI AGCGCT 1 cut(s) 196
AoxI GGCC 2 cut(s) 170, 432
ApeKI GCWGC 6 cut(s) 140, 143, 197, 282, 323, 500
ApoI RAATTY 3 cut(s) 527, 582, 594
AspLEI GCGC 3 cut(s) 197, 268, 303
AspS9I GGNCC 1 cut(s) 433
AsuHPI GGTGA 4 cut(s) 200, 437, 478, 506
AsuII TTCGAA 1 cut(s) 568
BbvI GCAGC 6 cut(s) 152, 155, 184, 294, 335, 512
BccI CCATC 1 cut(s) 456
BciT130I CCWGG 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 547
BfaI CTAG 1 cut(s) 512
BfmI CTRYAG 1 cut(s) 321
BfoI RGCGCY 2 cut(s) 198, 304
BisI GCNGC 7 cut(s) 141, 144, 153, 198, 283, 324, 501
BlpI GCTNAGC 1 cut(s) 156
BlsI GCNGC 7 cut(s) 142, 145, 154, 199, 284, 325, 502
Bme1390I CCNGG 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 433
BmrFI CCNGG 1 cut(s) 187
BmrI ACTGGG 1 cut(s) 206
BmsI GCATC 5 cut(s) 46, 248, 277, 459, 487
BmuI ACTGGG 1 cut(s) 206
Bpu1102I GCTNAGC 1 cut(s) 156
Bpu14I TTCGAA 1 cut(s) 568
BpuEI CTTGAG 1 cut(s) 105
BsaAI YACGTR 1 cut(s) 486
BsaBI GATNNNNATC 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 60
BsaXI ACNNNNNCTCC 4 cut(s) 9, 39, 69, 99
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 352
Bse118I RCCGGY 1 cut(s) 168
Bse1I ACTGG 1 cut(s) 212
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 2 cut(s) 10, 268
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 2 cut(s) 168, 352
BseNI ACTGG 1 cut(s) 212
BseXI GCAGC 6 cut(s) 152, 155, 184, 294, 335, 512
BseYI CCCAGC 1 cut(s) 201
Bsh1236I CGCG 1 cut(s) 253
BshFI GGCC 2 cut(s) 172, 434
BsiSI CCGG 2 cut(s) 169, 591
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 2 cut(s) 168, 352
BsmAI GTCTC 1 cut(s) 547
BsmFI GGGAC 1 cut(s) 240
BsnI GGCC 2 cut(s) 172, 434
Bsp119I TTCGAA 1 cut(s) 568
Bsp143I GATC 5 cut(s) 42, 312, 339, 475, 480
Bsp1720I GCTNAGC 1 cut(s) 156
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 6 cut(s) 153, 223, 237, 251, 258, 353
BspANI GGCC 2 cut(s) 172, 434
BspFNI CGCG 1 cut(s) 253
BspMAI CTGCAG 1 cut(s) 325
BspPI GGATC 2 cut(s) 50, 488
BspT104I TTCGAA 1 cut(s) 568
BsrFI RCCGGY 1 cut(s) 168
BsrI ACTGG 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 168
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 5 cut(s) 42, 312, 339, 475, 480
BssT1I CCWWGG 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 187
Bst6I CTCTTC 2 cut(s) 360, 383
BstAPI GCANNNNNTGC 1 cut(s) 149
BstBAI YACGTR 1 cut(s) 486
BstBI TTCGAA 1 cut(s) 568
BstC8I GCNNGC 7 cut(s) 170, 287, 291, 321, 328, 351, 545
BstDEI CTNAG 1 cut(s) 156
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 2 cut(s) 10, 268
BstFNI CGCG 1 cut(s) 253
BstH2I RGCGCY 2 cut(s) 198, 304
BstHHI GCGC 3 cut(s) 197, 268, 303
BstKTI GATC 5 cut(s) 45, 315, 342, 478, 483
BstMAI GTCTC 1 cut(s) 547
BstMBI GATC 5 cut(s) 42, 312, 339, 475, 480
BstMWI GCNNNNNNNGC 5 cut(s) 149, 152, 178, 245, 506
BstNI CCWGG 1 cut(s) 187
BstSCI CCNGG 1 cut(s) 185
BstSFI CTRYAG 1 cut(s) 321
BstUI CGCG 1 cut(s) 253
BstV1I GCAGC 6 cut(s) 152, 155, 184, 294, 335, 512
BsuRI GGCC 2 cut(s) 172, 434
BtgI CCRYGG 1 cut(s) 60
BtsCI GGATG 2 cut(s) 10, 268
Cac8I GCNNGC 7 cut(s) 170, 287, 291, 321, 328, 351, 545
CaiI CAGNNNCTG 1 cut(s) 556
CfoI GCGC 3 cut(s) 197, 268, 303
Cfr10I RCCGGY 1 cut(s) 168
Cfr13I GGNCC 1 cut(s) 433
CseI GACGC 1 cut(s) 242
CsiI ACCWGGT 1 cut(s) 185
Csp6I GTAC 1 cut(s) 487
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 4 cut(s) 14, 61, 490, 540
CviQI GTAC 1 cut(s) 487
DdeI CTNAG 1 cut(s) 156
DpnI GATC 5 cut(s) 44, 314, 341, 477, 482
DpnII GATC 5 cut(s) 42, 312, 339, 475, 480
EaeI YGGCCR 1 cut(s) 170
Eam1104I CTCTTC 2 cut(s) 360, 383
EarI CTCTTC 2 cut(s) 360, 383
EciI GGCGGA 1 cut(s) 368
Eco130I CCWWGG 1 cut(s) 60
Eco47III AGCGCT 1 cut(s) 196
EcoRI GAATTC 1 cut(s) 582
EcoRII CCWGG 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 4 cut(s) 17, 64, 493, 543
FaiI YATR 6 cut(s) 15, 62, 491, 533, 535, 541
FaqI GGGAC 1 cut(s) 240
FatI CATG 4 cut(s) 13, 60, 489, 539
FauI CCCGC 3 cut(s) 244, 258, 265
Fnu4HI GCNGC 7 cut(s) 141, 144, 153, 198, 283, 324, 501
FokI GGATG 2 cut(s) 17, 255
Fsp4HI GCNGC 7 cut(s) 141, 144, 153, 198, 283, 324, 501
FspBI CTAG 1 cut(s) 512
FspI TGCGCA 1 cut(s) 267
GlaI GCGC 3 cut(s) 196, 267, 302
GluI GCNGC 7 cut(s) 141, 144, 153, 198, 283, 324, 501
GsaI CCCAGC 1 cut(s) 205
HaeII RGCGCY 2 cut(s) 198, 304
HaeIII GGCC 2 cut(s) 172, 434
HapII CCGG 2 cut(s) 169, 591
HgaI GACGC 1 cut(s) 242
HhaI GCGC 3 cut(s) 197, 268, 303
Hin1II CATG 4 cut(s) 17, 64, 493, 543
Hin6I GCGC 3 cut(s) 195, 266, 301
HinP1I GCGC 3 cut(s) 195, 266, 301
HinfI GANTC 3 cut(s) 102, 428, 559
HpaII CCGG 2 cut(s) 169, 591
HphI GGTGA 4 cut(s) 200, 437, 478, 506
Hpy188I TCNGA 2 cut(s) 480, 581
Hpy188III TCNNGA 2 cut(s) 99, 122
HpyCH4IV ACGT 1 cut(s) 485
HpyCH4V TGCA 4 cut(s) 140, 323, 500, 547
HpyF10VI GCNNNNNNNGC 5 cut(s) 149, 152, 178, 245, 506
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 1 cut(s) 485
Hsp92II CATG 4 cut(s) 17, 64, 493, 543
HspAI GCGC 3 cut(s) 195, 266, 301
KroI GCCGGC 1 cut(s) 168
KroNI GCCGGC 1 cut(s) 170
Kzo9I GATC 5 cut(s) 42, 312, 339, 475, 480
Lsp1109I GCAGC 6 cut(s) 152, 155, 184, 294, 335, 512
LweI GCATC 5 cut(s) 46, 248, 277, 459, 487
MabI ACCWGGT 1 cut(s) 185
MaeI CTAG 1 cut(s) 512
MaeII ACGT 1 cut(s) 485
MaeIII GTNAC 1 cut(s) 425
MalI GATC 5 cut(s) 44, 314, 341, 477, 482
MboI GATC 5 cut(s) 42, 312, 339, 475, 480
MboII GAAGA 5 cut(s) 371, 374, 377, 397, 400
MluCI AATT 3 cut(s) 527, 582, 594
MlyI GAGTC 1 cut(s) 422
MnlI CCTC 6 cut(s) 33, 216, 230, 319, 346, 349
MroNI GCCGGC 1 cut(s) 168
MseI TTAA 2 cut(s) 21, 72
MslI CAYNNNNRTG 1 cut(s) 488
MspI CCGG 2 cut(s) 169, 591
MspR9I CCNGG 1 cut(s) 187
MvaI CCWGG 1 cut(s) 187
MvnI CGCG 1 cut(s) 253
MwoI GCNNNNNNNGC 5 cut(s) 149, 152, 178, 245, 506
NaeI GCCGGC 1 cut(s) 170
NcoI CCATGG 1 cut(s) 60
NdeII GATC 5 cut(s) 42, 312, 339, 475, 480
NgoMIV GCCGGC 1 cut(s) 168
NlaIII CATG 4 cut(s) 17, 64, 493, 543
NmeAIII GCCGAG 1 cut(s) 410
NmuCI GTSAC 1 cut(s) 425
NsbI TGCGCA 1 cut(s) 267
NspV TTCGAA 1 cut(s) 568
PdiI GCCGGC 1 cut(s) 170
PfeI GAWTC 2 cut(s) 102, 559
PkrI GCNGC 7 cut(s) 142, 145, 154, 199, 284, 325, 502
PleI GAGTC 1 cut(s) 422
PpsI GAGTC 1 cut(s) 422
Ppu21I YACGTR 1 cut(s) 486
Psp6I CCWGG 1 cut(s) 185
PspFI CCCAGC 1 cut(s) 201
PspGI CCWGG 1 cut(s) 185
PspPI GGNCC 1 cut(s) 433
PstI CTGCAG 1 cut(s) 325
PstNI CAGNNNCTG 1 cut(s) 556
RsaI GTAC 1 cut(s) 488
RsaNI GTAC 1 cut(s) 487
RseI CAYNNNNRTG 1 cut(s) 488
SaqAI TTAA 2 cut(s) 21, 72
SatI GCNGC 7 cut(s) 141, 144, 153, 198, 283, 324, 501
Sau3AI GATC 5 cut(s) 42, 312, 339, 475, 480
Sau96I GGNCC 1 cut(s) 433
SchI GAGTC 1 cut(s) 422
ScrFI CCNGG 1 cut(s) 187
SetI ASST 4 cut(s) 138, 191, 488, 511
SexAI ACCWGGT 1 cut(s) 185
SfaNI GCATC 5 cut(s) 46, 248, 277, 459, 487
SfcI CTRYAG 1 cut(s) 321
SfuI TTCGAA 1 cut(s) 568
SmiMI CAYNNNNRTG 1 cut(s) 488
SmlI CTYRAG 1 cut(s) 120
SmoI CTYRAG 1 cut(s) 120
Sse9I AATT 3 cut(s) 527, 582, 594
SsiI CCGC 6 cut(s) 153, 223, 237, 251, 258, 353
SspMI CTAG 1 cut(s) 512
StyD4I CCNGG 1 cut(s) 185
StyI CCWWGG 1 cut(s) 60
TaiI ACGT 1 cut(s) 488
TaqI TCGA 4 cut(s) 191, 311, 338, 568
TasI AATT 3 cut(s) 527, 582, 594
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 2 cut(s) 102, 559
Tru1I TTAA 2 cut(s) 21, 72
Tru9I TTAA 2 cut(s) 21, 72
TseFI GTSAC 1 cut(s) 425
TseI GCWGC 6 cut(s) 140, 143, 197, 282, 323, 500
Tsp45I GTSAC 1 cut(s) 425
TspDTI ATGAA 2 cut(s) 94, 540
XapI RAATTY 3 cut(s) 527, 582, 594
XspI CTAG 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.