Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030627.1

Orthogroup ID

OG0007262

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 201

Gene Structure 200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030627.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 200 bp

atgaccactggcgtgcactaccagaatctctttgacatgatggtcgatgccatcatctccgccgtggccgtcgtcggacacgagaacattctgttgattgtgacagagacaggttggcccagctccaacactgacccgagagaagacgacatgaacccggtttacgcggagctctacatcaaggggctattgggccatat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0009505 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

66

Amino Acids

7.3

Weight (kDa)

4.34

Isoelectric Point (pI)

31.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55780
fragaria_vesca	FvH4_6g52380 FvH4_7g23880
malus_domestica	MD01G1145800.v1.1 MD07G1213000.v1.1
prunus_persica	Prupe.2G245200_v2.0.a1
pyrus_communis	pycom01g16530 pycom07g19580
rosa_chinensis	RchiOBHm_Chr1g0369251
rosa_laevigata	RLG00000027143
rosa_multiflora	Rmu_co8194304.1_g000001 Rmu_sc0000873.1_g000020 Rmu_sc0006373.1_g000018 Rmu_sc0030627.1_g000001 Rmu_sc0035652.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287820
rosa_rugosa	Rorug01G0349300
rosa_samantha	Rh1BG319900 Rh1CG333800 Rh1DG350500 Rh3AG310300 Rh3BG346500 Rh3CG268000 Rh3DG345600
rosa_wichuraiana	Rw1G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
AccII	CGCG	1 cut(s)	167
AciI	CCGC	2 cut(s)	60, 167
AcoI	YGGCCR	1 cut(s)	66
AleI	CACNNNNGTG	1 cut(s)	11
AluBI	AGCT	2 cut(s)	123, 172
AluI	AGCT	2 cut(s)	123, 172
Alw21I	GWGCWC	2 cut(s)	18, 174
Alw26I	GTCTC	1 cut(s)	101
Alw44I	GTGCAC	1 cut(s)	14
Ama87I	CYCGRG	1 cut(s)	136
AoxI	GGCC	3 cut(s)	66, 116, 193
ApaLI	GTGCAC	1 cut(s)	14
AspS9I	GGNCC	2 cut(s)	117, 193
AsuC2I	CCSGG	1 cut(s)	158
AvaI	CYCGRG	1 cut(s)	136
BaeGI	GKGCMC	1 cut(s)	18
BanII	GRGCYC	1 cut(s)	174
BauI	CACGAG	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	2 cut(s)	18, 174
BccI	CCATC	2 cut(s)	34, 59
BceAI	ACGGC	2 cut(s)	47, 53
BcnI	CCSGG	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	101
Bme1390I	CCNGG	1 cut(s)	158
BmeT110I	CYCGRG	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	117, 193
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	1 cut(s)	37
BpiI	GAAGAC	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	63
Bse1I	ACTGG	1 cut(s)	13
BseDI	CCNNGG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	13
BseSI	GKGCMC	1 cut(s)	18
BseYI	CCCAGC	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	167
BshFI	GGCC	3 cut(s)	68, 118, 195
BsiHKAI	GWGCWC	2 cut(s)	18, 174
BsiHKCI	CYCGRG	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	101
BsnI	GGCC	3 cut(s)	68, 118, 195
BsoBI	CYCGRG	1 cut(s)	136
Bsp1286I	GDGCHC	2 cut(s)	18, 174
BspACI	CCGC	2 cut(s)	60, 167
BspANI	GGCC	3 cut(s)	68, 118, 195
BspFNI	CGCG	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	13
BssECI	CCNNGG	1 cut(s)	63
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	14
BstDSI	CCRYGG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	167
BstMAI	GTCTC	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	156
BstSLI	GKGCMC	1 cut(s)	18
BstUI	CGCG	1 cut(s)	167
BstV2I	GAAGAC	1 cut(s)	150
BsuRI	GGCC	3 cut(s)	68, 118, 195
BtgI	CCRYGG	1 cut(s)	63
BtsIMutI	CAGTG	2 cut(s)	6, 129
Cac8I	GCNNGC	1 cut(s)	14
Cfr13I	GGNCC	2 cut(s)	117, 193
CviAII	CATG	2 cut(s)	37, 151
CviJI	RGCY	6 cut(s)	68, 118, 123, 172, 187, 195
CviKI_1	RGCY	6 cut(s)	68, 118, 123, 172, 187, 195
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
EaeI	YGGCCR	1 cut(s)	66
EciI	GGCGGA	1 cut(s)	49
Ecl136II	GAGCTC	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	172
Eco88I	CYCGRG	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	2 cut(s)	40, 154
FaiI	YATR	3 cut(s)	38, 152, 198
FatI	CATG	2 cut(s)	36, 150
FriOI	GRGCYC	1 cut(s)	174
GsaI	CCCAGC	1 cut(s)	123
HaeIII	GGCC	3 cut(s)	68, 118, 195
HapII	CCGG	1 cut(s)	158
Hin1II	CATG	2 cut(s)	40, 154
HinfI	GANTC	1 cut(s)	25
HpaII	CCGG	1 cut(s)	158
Hpy166II	GTNNAC	2 cut(s)	16, 163
Hpy188I	TCNGA	1 cut(s)	77
Hpy8I	GTNNAC	2 cut(s)	16, 163
Hpy99I	CGWCG	2 cut(s)	74, 77
HpyCH4V	TGCA	1 cut(s)	16
Hsp92II	CATG	2 cut(s)	40, 154
LmnI	GCTCC	2 cut(s)	128, 169
LpnPI	CCDG	4 cut(s)	35, 96, 133, 171
LweI	GCATC	1 cut(s)	37
MaeIII	GTNAC	1 cut(s)	100
MboII	GAAGA	1 cut(s)	155
MhlI	GDGCHC	2 cut(s)	18, 174
MmeI	TCCRAC	2 cut(s)	55, 150
MslI	CAYNNNNRTG	1 cut(s)	11
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	158
MvnI	CGCG	1 cut(s)	167
NciI	CCSGG	1 cut(s)	158
NlaIII	CATG	2 cut(s)	40, 154
NmuCI	GTSAC	1 cut(s)	100
OliI	CACNNNNGTG	1 cut(s)	11
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	25
Psp124BI	GAGCTC	1 cut(s)	174
PspFI	CCCAGC	1 cut(s)	119
PspPI	GGNCC	2 cut(s)	117, 193
PsrI	GAACNNNNNNTAC	2 cut(s)	146, 178
RseI	CAYNNNNRTG	1 cut(s)	11
SacI	GAGCTC	1 cut(s)	174
Sau96I	GGNCC	2 cut(s)	117, 193
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	2 cut(s)	18, 174
SetI	ASST	3 cut(s)	115, 125, 174
SfaNI	GCATC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	11
SsiI	CCGC	2 cut(s)	60, 167
SstI	GAGCTC	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	156
TaqI	TCGA	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	25
TscAI	CASTG	2 cut(s)	13, 136
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	167
TspRI	CASTG	2 cut(s)	13, 136
VneI	GTGCAC	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.