Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007262

Physical Location & Seq

Genomic Coordinates Forward (+)

38597764 .. 38598336

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g52380.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGTTACTAACCTCGGAAGAACTGAGCTTTGCCGGCTTCCGCCGGCTGGAGCACCCCTTCAGCTTCCGTGACGACATGGCCACCGGAGTCCGCTACCGGAACCTCTTCGACATGATGGTCGACGCCGTCATCTCCGCCATGGCCGTCGCCGGACACGAGAACATTCCTCTGATTGTGACTGAAACGGGTTGGCCCAGCTCAAGCACCGACCCGAGAGAAGTACAAGAACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0009505 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

78

Amino Acids

8.73

Weight (kDa)

4.77

Isoelectric Point (pI)

40.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	23 - 68	3e-12	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55780
fragaria_vesca	FvH4_6g52380 FvH4_7g23880
malus_domestica	MD01G1145800.v1.1 MD07G1213000.v1.1
prunus_persica	Prupe.2G245200_v2.0.a1
pyrus_communis	pycom01g16530 pycom07g19580
rosa_chinensis	RchiOBHm_Chr1g0369251
rosa_laevigata	RLG00000027143
rosa_multiflora	Rmu_co8194304.1_g000001 Rmu_sc0000873.1_g000020 Rmu_sc0006373.1_g000018 Rmu_sc0030627.1_g000001 Rmu_sc0035652.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287820
rosa_rugosa	Rorug01G0349300
rosa_samantha	Rh1BG319900 Rh1CG333800 Rh1DG350500 Rh3AG310300 Rh3BG346500 Rh3CG268000 Rh3DG345600
rosa_wichuraiana	Rw1G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	116
AccI	GTMKAC	1 cut(s)	120
AciI	CCGC	3 cut(s)	40, 91, 135
AclI	AACGTT	1 cut(s)	229
AcoI	YGGCCR	2 cut(s)	78, 141
AcuI	CTGAAG	1 cut(s)	43
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	1 cut(s)	46
AluBI	AGCT	3 cut(s)	27, 63, 198
AluI	AGCT	3 cut(s)	27, 63, 198
Alw21I	GWGCWC	1 cut(s)	54
Ama87I	CYCGRG	1 cut(s)	211
AoxI	GGCC	3 cut(s)	78, 141, 191
Asp700I	GAANNNNTTC	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	192
AvaI	CYCGRG	1 cut(s)	211
BalI	TGGCCA	1 cut(s)	80
BauI	CACGAG	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	54
BccI	CCATC	1 cut(s)	109
BceAI	ACGGC	2 cut(s)	110, 128
BmeT110I	CYCGRG	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	184
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	12, 138
BsaWI	WCCGGW	2 cut(s)	83, 96
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse118I	RCCGGY	2 cut(s)	32, 42
BseDI	CCNNGG	2 cut(s)	12, 138
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMII	CTCAG	1 cut(s)	14
BseYI	CCCAGC	1 cut(s)	194
BshFI	GGCC	3 cut(s)	80, 143, 193
BsiHKAI	GWGCWC	1 cut(s)	54
BsiHKCI	CYCGRG	1 cut(s)	211
BsiSI	CCGG	5 cut(s)	33, 43, 84, 97, 150
BslI	CCNNNNNNNGG	1 cut(s)	46
BsnI	GGCC	3 cut(s)	80, 143, 193
BsoBI	CYCGRG	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	3 cut(s)	40, 91, 135
BspANI	GGCC	3 cut(s)	80, 143, 193
BspCNI	CTCAG	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	101
BsrFI	RCCGGY	2 cut(s)	32, 42
BssAI	RCCGGY	2 cut(s)	32, 42
BssECI	CCNNGG	2 cut(s)	12, 138
BssNI	GRCGYC	1 cut(s)	123
BssSI	CACGAG	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	138
Bst2BI	CACGAG	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	110
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	34, 44
BstDEI	CTNAG	1 cut(s)	23
BstDSI	CCRYGG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BsuRI	GGCC	3 cut(s)	80, 143, 193
BtgI	CCRYGG	1 cut(s)	138
Cac8I	GCNNGC	2 cut(s)	34, 44
Cfr10I	RCCGGY	2 cut(s)	32, 42
Cfr13I	GGNCC	1 cut(s)	192
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	3 cut(s)	76, 112, 139
CviJI	RGCY	8 cut(s)	27, 36, 46, 63, 80, 143, 193, 198
CviKI_1	RGCY	8 cut(s)	27, 36, 46, 63, 80, 143, 193, 198
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	1 cut(s)	23
DrdI	GACNNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	116
EaeI	YGGCCR	2 cut(s)	78, 141
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
EciI	GGCGGA	2 cut(s)	29, 124
Eco130I	CCWWGG	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	43
Eco88I	CYCGRG	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	3 cut(s)	79, 115, 142
FaiI	YATR	3 cut(s)	77, 113, 140
FatI	CATG	3 cut(s)	75, 111, 138
FblI	GTMKAC	1 cut(s)	120
GsaI	CCCAGC	1 cut(s)	198
GsuI	CTGGAG	1 cut(s)	68
HaeIII	GGCC	3 cut(s)	80, 143, 193
HapII	CCGG	5 cut(s)	33, 43, 84, 97, 150
HgaI	GACGC	1 cut(s)	131
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	3 cut(s)	79, 115, 142
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	1 cut(s)	87
HpaII	CCGG	5 cut(s)	33, 43, 84, 97, 150
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	2 cut(s)	16, 171
Hpy8I	GTNNAC	1 cut(s)	121
Hpy99I	CGWCG	2 cut(s)	125, 149
HpyAV	CCTTC	1 cut(s)	67
HpyCH4IV	ACGT	1 cut(s)	229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	1 cut(s)	23
HpySE526I	ACGT	1 cut(s)	229
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	3 cut(s)	79, 115, 142
KroI	GCCGGC	2 cut(s)	32, 42
KroNI	GCCGGC	2 cut(s)	34, 44
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	7 cut(s)	32, 46, 56, 97, 110, 163, 208
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	3 cut(s)	3, 68, 175
MboII	GAAGA	2 cut(s)	29, 97
MhlI	GDGCHC	1 cut(s)	54
MlsI	TGGCCA	1 cut(s)	80
MluNI	TGGCCA	1 cut(s)	80
MlyI	GAGTC	1 cut(s)	96
MnlI	CCTC	3 cut(s)	22, 113, 177
Mox20I	TGGCCA	1 cut(s)	80
MroNI	GCCGGC	2 cut(s)	32, 42
MroXI	GAANNNNTTC	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	80
Msp20I	TGGCCA	1 cut(s)	80
MspI	CCGG	5 cut(s)	33, 43, 84, 97, 150
MwoI	GCNNNNNNNGC	1 cut(s)	33
NaeI	GCCGGC	2 cut(s)	34, 44
NcoI	CCATGG	1 cut(s)	138
NgoMIV	GCCGGC	2 cut(s)	32, 42
NlaIII	CATG	3 cut(s)	79, 115, 142
NlaIV	GGNNCC	1 cut(s)	101
NmuCI	GTSAC	2 cut(s)	68, 175
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PdiI	GCCGGC	2 cut(s)	34, 44
PdmI	GAANNNNTTC	1 cut(s)	104
PflFI	GACNNNGTC	1 cut(s)	125
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
Psp1406I	AACGTT	1 cut(s)	229
PspFI	CCCAGC	1 cut(s)	194
PspN4I	GGNNCC	1 cut(s)	101
PspPI	GGNCC	1 cut(s)	192
PsyI	GACNNNGTC	1 cut(s)	125
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SalI	GTCGAC	1 cut(s)	119
Sau96I	GGNCC	1 cut(s)	192
SchI	GAGTC	1 cut(s)	96
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	6 cut(s)	14, 29, 65, 105, 200, 232
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
SsiI	CCGC	3 cut(s)	40, 91, 135
StyI	CCWWGG	1 cut(s)	138
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	2 cut(s)	108, 120
TatI	WGTACW	1 cut(s)	220
TseFI	GTSAC	2 cut(s)	68, 175
Tsp45I	GTSAC	2 cut(s)	68, 175
TspGWI	ACGGA	1 cut(s)	56
Tth111I	GACNNNGTC	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	120
XmnI	GAANNNNTTC	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.