Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0007262

Physical Location & Seq

Genomic Coordinates Reverse (-)

39026333 .. 39026932

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG345600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGACCACTGGCGTGCACTACCAGAATCTCTTTGACATGATGGTCGATGCCATCATCTCCGCCATGGCCGTCGTCGGACACGAGAACATTCTGTTGATTGTGACAGAGACAGGTTGGCCTAGCTCCAACACTGACCCGAGAGAAGACGACATGAACCCGGTTTACGCGGAGCTCTACATCAAGGGGCTATTGGGCCATATGAGGTTGGGTCGGGGTTGGGCCGAAAAGAAGGGGTACCTTTGGTTTACATCTATGAGCGGAGCGGTGAATTCATTTGGGAATGTGGATGTGGTGGTGAATACATGGGTAATCTCATATTTTGTTTTCTGGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0009505 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

111

Amino Acids

12.58

Weight (kDa)

5.12

Isoelectric Point (pI)

21.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	2 - 72	5.5e-11	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55780
fragaria_vesca	FvH4_6g52380 FvH4_7g23880
malus_domestica	MD01G1145800.v1.1 MD07G1213000.v1.1
prunus_persica	Prupe.2G245200_v2.0.a1
pyrus_communis	pycom01g16530 pycom07g19580
rosa_chinensis	RchiOBHm_Chr1g0369251
rosa_laevigata	RLG00000027143
rosa_multiflora	Rmu_co8194304.1_g000001 Rmu_sc0000873.1_g000020 Rmu_sc0006373.1_g000018 Rmu_sc0030627.1_g000001 Rmu_sc0035652.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287820
rosa_rugosa	Rorug01G0349300
rosa_samantha	Rh1BG319900 Rh1CG333800 Rh1DG350500 Rh3AG310300 Rh3BG346500 Rh3CG268000 Rh3DG345600
rosa_wichuraiana	Rw1G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
Acc65I	GGTACC	1 cut(s)	234
AccB1I	GGYRCC	1 cut(s)	234
AccBSI	CCGCTC	2 cut(s)	258, 263
AccII	CGCG	1 cut(s)	167
AciI	CCGC	5 cut(s)	60, 167, 258, 263, 331
AcoI	YGGCCR	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	268
AfaI	GTAC	1 cut(s)	236
AleI	CACNNNNGTG	1 cut(s)	11
AluBI	AGCT	2 cut(s)	123, 172
AluI	AGCT	2 cut(s)	123, 172
Alw21I	GWGCWC	2 cut(s)	18, 174
Alw26I	GTCTC	1 cut(s)	101
Alw44I	GTGCAC	1 cut(s)	14
Ama87I	CYCGRG	1 cut(s)	136
AoxI	GGCC	4 cut(s)	66, 116, 193, 219
ApaLI	GTGCAC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	268
Asp718I	GGTACC	1 cut(s)	234
AspS9I	GGNCC	2 cut(s)	193, 219
AsuC2I	CCSGG	1 cut(s)	158
AsuHPI	GGTGA	2 cut(s)	277, 307
AvaI	CYCGRG	1 cut(s)	136
BaeGI	GKGCMC	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	234
BanII	GRGCYC	1 cut(s)	174
BauI	CACGAG	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	2 cut(s)	18, 174
BccI	CCATC	2 cut(s)	34, 59
BceAI	ACGGC	1 cut(s)	53
BcnI	CCSGG	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	1 cut(s)	120
Bme1390I	CCNGG	1 cut(s)	158
BmeT110I	CYCGRG	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	193, 219
BmiI	GGNNCC	1 cut(s)	236
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	1 cut(s)	37
BpiI	GAAGAC	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	63
Bse1I	ACTGG	1 cut(s)	13
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	292
BseNI	ACTGG	1 cut(s)	13
BseSI	GKGCMC	1 cut(s)	18
Bsh1236I	CGCG	1 cut(s)	167
BshFI	GGCC	4 cut(s)	68, 118, 195, 221
BshNI	GGYRCC	1 cut(s)	234
BsiHKAI	GWGCWC	2 cut(s)	18, 174
BsiHKCI	CYCGRG	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	101
BsnI	GGCC	4 cut(s)	68, 118, 195, 221
BsoBI	CYCGRG	1 cut(s)	136
Bsp1286I	GDGCHC	2 cut(s)	18, 174
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	5 cut(s)	60, 167, 258, 263, 331
BspANI	GGCC	4 cut(s)	68, 118, 195, 221
BspFNI	CGCG	1 cut(s)	167
BspLI	GGNNCC	1 cut(s)	236
BspT107I	GGYRCC	1 cut(s)	234
BsrBI	CCGCTC	2 cut(s)	258, 263
BsrI	ACTGG	1 cut(s)	13
BssECI	CCNNGG	1 cut(s)	63
BssSI	CACGAG	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	14
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	292
BstFNI	CGCG	1 cut(s)	167
BstMAI	GTCTC	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	156
BstSLI	GKGCMC	1 cut(s)	18
BstUI	CGCG	1 cut(s)	167
BstV2I	GAAGAC	1 cut(s)	150
BsuRI	GGCC	4 cut(s)	68, 118, 195, 221
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	292
BtsIMutI	CAGTG	2 cut(s)	6, 129
Cac8I	GCNNGC	1 cut(s)	14
Cfr13I	GGNCC	2 cut(s)	193, 219
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	4 cut(s)	37, 64, 151, 303
CviJI	RGCY	7 cut(s)	68, 118, 123, 172, 187, 195, 221
CviKI_1	RGCY	7 cut(s)	68, 118, 123, 172, 187, 195, 221
CviQI	GTAC	1 cut(s)	235
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
EaeI	YGGCCR	1 cut(s)	66
EciI	GGCGGA	1 cut(s)	49
Ecl136II	GAGCTC	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	172
Eco88I	CYCGRG	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	172
EcoRI	GAATTC	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	4 cut(s)	40, 67, 154, 306
FaiI	YATR	8 cut(s)	38, 65, 152, 198, 200, 254, 304, 316
FatI	CATG	4 cut(s)	36, 63, 150, 302
FauNDI	CATATG	1 cut(s)	198
FokI	GGATG	1 cut(s)	299
FriOI	GRGCYC	1 cut(s)	174
FspBI	CTAG	1 cut(s)	120
HaeIII	GGCC	4 cut(s)	68, 118, 195, 221
HapII	CCGG	1 cut(s)	158
Hin1II	CATG	4 cut(s)	40, 67, 154, 306
HinfI	GANTC	1 cut(s)	25
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	2 cut(s)	277, 307
Hpy166II	GTNNAC	3 cut(s)	16, 163, 246
Hpy188I	TCNGA	1 cut(s)	77
Hpy8I	GTNNAC	3 cut(s)	16, 163, 246
Hpy99I	CGWCG	2 cut(s)	74, 77
HpyAV	CCTTC	1 cut(s)	223
HpyCH4V	TGCA	1 cut(s)	16
Hsp92II	CATG	4 cut(s)	40, 67, 154, 306
KpnI	GGTACC	1 cut(s)	238
LmnI	GCTCC	3 cut(s)	128, 169, 260
LpnPI	CCDG	4 cut(s)	35, 96, 171, 313
LweI	GCATC	1 cut(s)	37
MaeI	CTAG	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	100
MbiI	CCGCTC	2 cut(s)	258, 263
MboII	GAAGA	1 cut(s)	155
MhlI	GDGCHC	2 cut(s)	18, 174
MluCI	AATT	1 cut(s)	268
MmeI	TCCRAC	2 cut(s)	55, 150
MnlI	CCTC	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	11
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	158
MvnI	CGCG	1 cut(s)	167
NciI	CCSGG	1 cut(s)	158
NcoI	CCATGG	1 cut(s)	63
NdeI	CATATG	1 cut(s)	198
NlaIII	CATG	4 cut(s)	40, 67, 154, 306
NlaIV	GGNNCC	1 cut(s)	236
NmuCI	GTSAC	1 cut(s)	100
OliI	CACNNNNGTG	1 cut(s)	11
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	25
Psp124BI	GAGCTC	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	236
PspPI	GGNCC	2 cut(s)	193, 219
PsrI	GAACNNNNNNTAC	2 cut(s)	146, 178
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
RseI	CAYNNNNRTG	1 cut(s)	11
SacI	GAGCTC	1 cut(s)	174
Sau96I	GGNCC	2 cut(s)	193, 219
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	2 cut(s)	18, 174
SetI	ASST	5 cut(s)	115, 125, 174, 206, 240
SfaNI	GCATC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	11
Sse9I	AATT	1 cut(s)	268
SsiI	CCGC	5 cut(s)	60, 167, 258, 263, 331
SspMI	CTAG	1 cut(s)	120
SstI	GAGCTC	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	156
StyI	CCWWGG	1 cut(s)	63
TaqI	TCGA	1 cut(s)	45
TasI	AATT	1 cut(s)	268
TfiI	GAWTC	1 cut(s)	25
TscAI	CASTG	2 cut(s)	13, 136
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	167, 261
TspRI	CASTG	2 cut(s)	13, 136
VneI	GTGCAC	1 cut(s)	14
XapI	RAATTY	1 cut(s)	268
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.