Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005494

Physical Location & Seq

Genomic Coordinates Forward (+)

20713709 .. 20714825

Gene Structure 1117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAAGAAACCTCATTTCTTGAAGAATCCAGTGTTTTTCCTATTTCTACTCATCACTGTTTCTTCCCTAACTATACTCATCTTCTCCTTTCTCAAATTACCGGAAACACCTCTCGCCGCCGGTAACCATCTCCGCAAACTCCGTTACGAGCTCACCGATGAACTCGGTTTATTCGGGAAGATGATGATCGAAATGCTACCAGAAGATCTGGTTTTCACTGCCTTCGTACCGTCGGAAAAATCATTCAGCCGAGATCTAGGGCTGAAATTAAACACTAGCCGTCCAATTAAATCCCACGAAGAAGACGACGACGGAGATAACACATACGCCGTCGTATCGAGGATCATGAGTTTCGCGGTGGTTCCTTACAAAGTAGAAGAAGTAGACATAGGGAACGACGAAACGGCGTCGTATGAGTCGTTGAGTGGTTTCACACTTCAGATTTGGAGAAAAAGAAATGGTGGTGGATTAGTCGTTAATGGCGTTGAGACTGAGAAGATGGGATTAAAGAGAGGTAAAATCATCGTACATATAATGAATGGTGTTGTAATGGATTCTGATTTCGCACAATCTATTGCTTCTTCTACTCCTAAAGACGAAGATGATGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

204

Amino Acids

22.85

Weight (kDa)

5.16

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55820
malus_domestica	MD07G1214900.v1.1
prunus_persica	Prupe.2G246900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0369501 RchiOBHm_Chr3g0468601
rosa_laevigata	RLG00000001004 RLG00000009285 RLG00000034361
rosa_multiflora	Rmu_co8213256.1_g000001 Rmu_sc0001141.1_g000022 Rmu_sc0017355.1_g000002 Rmu_sc0031857.1_g000001 Rmu_ssc0000484.1_g000025
rosa_roxburghii	Rroxscaffold_4G00287580
rosa_rugosa	Rorug01G0351000
rosa_samantha	Rh1AG359000 Rh1BG322700 Rh1DG353500 Rh2AG179500 Rh2DG185300 Rh3BG166800 Rh4BG074800 Rh4BG080200 Rh5BG484400 Rh5CG509000 Rh7BG195500
rosa_wichuraiana	Rw1G031630 Rw5G043290 Rw6G011390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	384
AccII	CGCG	1 cut(s)	356
AciI	CCGC	3 cut(s)	117, 133, 356
AclWI	GGATC	2 cut(s)	350, 602
AcuI	CTGAAG	1 cut(s)	422
AcyI	GRCGYC	1 cut(s)	407
AfaI	GTAC	2 cut(s)	228, 528
AgsI	TTSAA	1 cut(s)	22
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	1 cut(s)	482
AlwI	GGATC	2 cut(s)	350, 602
AsuHPI	GGTGA	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	153
BbsI	GAAGAC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	153
BccI	CCATC	2 cut(s)	135, 493
BceAI	ACGGC	3 cut(s)	264, 314, 420
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	2 cut(s)	257, 276
BglII	AGATCT	2 cut(s)	205, 253
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	363
BpiI	GAAGAC	1 cut(s)	309
BsaBI	GATNNNNATC	2 cut(s)	185, 606
BsaHI	GRCGYC	1 cut(s)	407
BsaWI	WCCGGW	1 cut(s)	100
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	1 cut(s)	29
Bse8I	GATNNNNATC	2 cut(s)	185, 606
BseJI	GATNNNNATC	2 cut(s)	185, 606
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	1 cut(s)	29
Bsh1236I	CGCG	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	153
BsiSI	CCGG	2 cut(s)	101, 120
BsmAI	GTCTC	1 cut(s)	482
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	5 cut(s)	186, 205, 253, 342, 607
BspACI	CCGC	3 cut(s)	117, 133, 356
BspCNI	CTCAG	1 cut(s)	484
BspFNI	CGCG	1 cut(s)	356
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	1 cut(s)	363
BspPI	GGATC	2 cut(s)	350, 602
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	29
BssAI	RCCGGY	1 cut(s)	119
BssMI	GATC	5 cut(s)	186, 205, 253, 342, 607
BssNI	GRCGYC	1 cut(s)	407
Bst4CI	ACNGT	2 cut(s)	58, 231
BstACI	GRCGYC	1 cut(s)	407
BstDEI	CTNAG	1 cut(s)	492
BstEII	GGTNACC	1 cut(s)	122
BstFNI	CGCG	1 cut(s)	356
BstKTI	GATC	5 cut(s)	189, 208, 256, 345, 610
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	5 cut(s)	186, 205, 253, 342, 607
BstPI	GGTNACC	1 cut(s)	122
BstUI	CGCG	1 cut(s)	356
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	2 cut(s)	205, 253
BstYI	RGATCY	2 cut(s)	205, 253
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	3 cut(s)	36, 54, 216
CciI	TCATGA	1 cut(s)	345
Cfr10I	RCCGGY	1 cut(s)	119
CseI	GACGC	1 cut(s)	396
Csp6I	GTAC	2 cut(s)	227, 527
CviAII	CATG	1 cut(s)	346
CviJI	RGCY	4 cut(s)	151, 249, 262, 279
CviKI_1	RGCY	4 cut(s)	151, 249, 262, 279
CviQI	GTAC	2 cut(s)	227, 527
DdeI	CTNAG	1 cut(s)	492
DpnI	GATC	5 cut(s)	188, 207, 255, 344, 609
DpnII	GATC	5 cut(s)	186, 205, 253, 342, 607
Ecl136II	GAGCTC	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	422
Eco91I	GGTNACC	1 cut(s)	122
EcoICRI	GAGCTC	1 cut(s)	151
EcoO65I	GGTNACC	1 cut(s)	122
EcoT38I	GRGCYC	1 cut(s)	153
FaeI	CATG	1 cut(s)	349
FaiI	YATR	8 cut(s)	74, 325, 347, 389, 414, 531, 533, 613
FatI	CATG	1 cut(s)	345
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	1 cut(s)	117
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	2 cut(s)	257, 276
GluI	GCNGC	1 cut(s)	117
HapII	CCGG	2 cut(s)	101, 120
HgaI	GACGC	1 cut(s)	396
Hin1I	GRCGYC	1 cut(s)	407
Hin1II	CATG	1 cut(s)	349
HinfI	GANTC	3 cut(s)	25, 416, 554
HpaII	CCGG	2 cut(s)	101, 120
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	3 cut(s)	235, 441, 559
Hpy188III	TCNNGA	3 cut(s)	19, 175, 346
Hpy8I	GTNNAC	1 cut(s)	385
Hpy99I	CGWCG	6 cut(s)	235, 311, 314, 335, 401, 412
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	2 cut(s)	58, 231
HpyF3I	CTNAG	1 cut(s)	492
Hsp92I	GRCGYC	1 cut(s)	407
Hsp92II	CATG	1 cut(s)	349
Kzo9I	GATC	5 cut(s)	186, 205, 253, 342, 607
LpnPI	CCDG	5 cut(s)	42, 114, 133, 194, 213
MaeI	CTAG	2 cut(s)	257, 276
MaeIII	GTNAC	2 cut(s)	122, 143
MalI	GATC	5 cut(s)	188, 207, 255, 344, 609
MboI	GATC	5 cut(s)	186, 205, 253, 342, 607
MflI	RGATCY	2 cut(s)	205, 253
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	3 cut(s)	95, 266, 285
MlyI	GAGTC	1 cut(s)	425
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	4 cut(s)	21, 120, 333, 506
MseI	TTAA	4 cut(s)	269, 288, 477, 506
MspI	CCGG	2 cut(s)	101, 120
MvnI	CGCG	1 cut(s)	356
NdeII	GATC	5 cut(s)	186, 205, 253, 342, 607
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	1 cut(s)	363
NmeAIII	GCCGAG	1 cut(s)	275
PagI	TCATGA	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	4 cut(s)	153, 303, 416, 480
PfeI	GAWTC	2 cut(s)	25, 554
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
Psp124BI	GAGCTC	1 cut(s)	153
PspEI	GGTNACC	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	363
PsuI	RGATCY	2 cut(s)	205, 253
RsaI	GTAC	2 cut(s)	228, 528
RsaNI	GTAC	2 cut(s)	227, 527
SacI	GAGCTC	1 cut(s)	153
SaqAI	TTAA	4 cut(s)	269, 288, 477, 506
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	5 cut(s)	186, 205, 253, 342, 607
SchI	GAGTC	1 cut(s)	425
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	4 cut(s)	13, 112, 153, 517
Sse9I	AATT	3 cut(s)	95, 266, 285
SsiI	CCGC	3 cut(s)	117, 133, 356
SspMI	CTAG	2 cut(s)	257, 276
SstI	GAGCTC	1 cut(s)	153
TaaI	ACNGT	2 cut(s)	58, 231
TaqI	TCGA	2 cut(s)	189, 338
TasI	AATT	3 cut(s)	95, 266, 285
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	2 cut(s)	25, 554
Tru1I	TTAA	4 cut(s)	269, 288, 477, 506
Tru9I	TTAA	4 cut(s)	269, 288, 477, 506
TscAI	CASTG	3 cut(s)	36, 61, 223
TspDTI	ATGAA	3 cut(s)	17, 174, 551
TspGWI	ACGGA	2 cut(s)	131, 327
TspRI	CASTG	3 cut(s)	36, 61, 223
XmiI	GTMKAC	1 cut(s)	384
XspI	CTAG	2 cut(s)	257, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.