Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005494

Physical Location & Seq

Genomic Coordinates Reverse (-)

8584063 .. 8584635

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00287580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAGCAGAAGCCGGGTTTTGAGGAATCCAATCGCGTTTGTATTGGGGGTGGTATTGGTTTGCAGCTTTGTAATACTCGCACTCACAATGCTACGTCTTCCAGATCCAACCACAACAGCCACTACTCATCATTCCCACAGTGATAACAAGTTACTGATCGGAAAGTTTGGGGAGATGATGATCGAAATGTTGCCGGAAGATCTAGCTTTCACGGTCTTTCTCCCATCGGAGAAAGCTTTCAAGCGGGACCTGAGGCTGGACCCGAGTGATAGTTTTGTGGGGGAGAAGATGAATGATACGTATGCAGTGGTTTCTAGAGTGCTGGGCTTCTCCGCCGTGCCGCGGAGTATTGGTTCCGAAACGGTGGCGTTTGGGAAGGAGATTTCGTACGATTCGATATCGGGGTTTGTGCTGTACATAACGAAGGATGAAGATGGAAGGCTGGTTGTCAATGGGGTTCGATCGGAGAGAGTTGATCTGAGGAGGAAGGGGAGTCTTGTGCATGTTATGGATGGGGTTCTGATGGATGCCGAGTTCCAGCAATCGGTTCAGTATGATGGTGAAGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

190

Amino Acids

21.15

Weight (kDa)

5.26

Isoelectric Point (pI)

54.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fasciclin	PF02469	63 - 175	6.1e-07	Fasciclin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55820
malus_domestica	MD07G1214900.v1.1
prunus_persica	Prupe.2G246900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0369501 RchiOBHm_Chr3g0468601
rosa_laevigata	RLG00000001004 RLG00000009285 RLG00000034361
rosa_multiflora	Rmu_co8213256.1_g000001 Rmu_sc0001141.1_g000022 Rmu_sc0017355.1_g000002 Rmu_sc0031857.1_g000001 Rmu_ssc0000484.1_g000025
rosa_roxburghii	Rroxscaffold_4G00287580
rosa_rugosa	Rorug01G0351000
rosa_samantha	Rh1AG359000 Rh1BG322700 Rh1DG353500 Rh2AG179500 Rh2DG185300 Rh3BG166800 Rh4BG074800 Rh4BG080200 Rh5BG484400 Rh5CG509000 Rh7BG195500
rosa_wichuraiana	Rw1G031630 Rw5G043290 Rw6G011390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	35, 343
AciI	CCGC	4 cut(s)	244, 333, 341, 343
AclWI	GGATC	1 cut(s)	98
AfaI	GTAC	2 cut(s)	389, 416
AfiI	CCNNNNNNNGG	3 cut(s)	256, 342, 544
AgsI	TTSAA	1 cut(s)	241
AloI	GAACNNNNNNTCC	4 cut(s)	337, 369, 518, 550
AluBI	AGCT	3 cut(s)	66, 206, 236
AluI	AGCT	3 cut(s)	66, 206, 236
AlwI	GGATC	1 cut(s)	98
Ama87I	CYCGRG	1 cut(s)	262
ApeKI	GCWGC	1 cut(s)	63
Asp700I	GAANNNNTTC	1 cut(s)	236
AspS9I	GGNCC	2 cut(s)	247, 259
AsuC2I	CCSGG	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	572
AvaI	CYCGRG	1 cut(s)	262
AvaII	GGWCC	2 cut(s)	247, 259
AxyI	CCTNAGG	1 cut(s)	251
BbsI	GAAGAC	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	75
BccI	CCATC	5 cut(s)	232, 428, 506, 517, 551
BceAI	ACGGC	1 cut(s)	320
BcnI	CCSGG	1 cut(s)	14
BfaI	CTAG	2 cut(s)	203, 315
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	2 cut(s)	64, 341
BlsI	GCNGC	2 cut(s)	65, 342
Bme1390I	CCNGG	1 cut(s)	14
Bme18I	GGWCC	2 cut(s)	247, 259
BmeT110I	CYCGRG	1 cut(s)	262
BmgT120I	GGNCC	2 cut(s)	247, 259
BmiI	GGNNCC	3 cut(s)	248, 261, 355
BmrFI	CCNGG	1 cut(s)	14
BmsI	GCATC	1 cut(s)	517
BpiI	GAAGAC	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	14
BsaAI	YACGTR	1 cut(s)	300
BsaBI	GATNNNNATC	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	341
BsaXI	ACNNNNNCTCC	4 cut(s)	337, 367, 371, 401
Bsc4I	CCNNNNNNNGG	3 cut(s)	256, 342, 544
Bse21I	CCTNAGG	1 cut(s)	251
Bse8I	GATNNNNATC	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	341
BseGI	GGATG	3 cut(s)	433, 517, 532
BseJI	GATNNNNATC	1 cut(s)	179
BseLI	CCNNNNNNNGG	3 cut(s)	256, 342, 544
BseMII	CTCAG	2 cut(s)	242, 470
BseRI	GAGGAG	1 cut(s)	496
BseXI	GCAGC	1 cut(s)	75
BseYI	CCCAGC	1 cut(s)	322
Bsh1236I	CGCG	2 cut(s)	35, 343
Bsh1285I	CGRYCG	1 cut(s)	464
BsiEI	CGRYCG	1 cut(s)	464
BsiHKCI	CYCGRG	1 cut(s)	262
BsiSI	CCGG	2 cut(s)	13, 194
BsiWI	CGTACG	1 cut(s)	387
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	3 cut(s)	256, 342, 544
BsmFI	GGGAC	1 cut(s)	260
BsoBI	CYCGRG	1 cut(s)	262
Bsp1407I	TGTACA	1 cut(s)	414
Bsp143I	GATC	6 cut(s)	103, 156, 180, 199, 461, 475
BspACI	CCGC	4 cut(s)	244, 333, 341, 343
BspCNI	CTCAG	2 cut(s)	243, 471
BspFNI	CGCG	2 cut(s)	35, 343
BspLI	GGNNCC	3 cut(s)	248, 261, 355
BspPI	GGATC	1 cut(s)	98
BsrGI	TGTACA	1 cut(s)	414
BssECI	CCNNGG	1 cut(s)	341
BssMI	GATC	6 cut(s)	103, 156, 180, 199, 461, 475
Bst4CI	ACNGT	3 cut(s)	140, 214, 364
BstAUI	TGTACA	1 cut(s)	414
BstBAI	YACGTR	1 cut(s)	300
BstDEI	CTNAG	2 cut(s)	251, 479
BstDSI	CCRYGG	1 cut(s)	341
BstF5I	GGATG	3 cut(s)	433, 517, 532
BstFNI	CGCG	2 cut(s)	35, 343
BstKTI	GATC	6 cut(s)	106, 159, 183, 202, 464, 478
BstMBI	GATC	6 cut(s)	103, 156, 180, 199, 461, 475
BstMCI	CGRYCG	1 cut(s)	464
BstNSI	RCATGY	1 cut(s)	506
BstSCI	CCNGG	1 cut(s)	12
BstSNI	TACGTA	1 cut(s)	300
BstUI	CGCG	2 cut(s)	35, 343
BstV1I	GCAGC	1 cut(s)	75
BstV2I	GAAGAC	1 cut(s)	89
BstX2I	RGATCY	2 cut(s)	103, 199
BstYI	RGATCY	2 cut(s)	103, 199
Bsu36I	CCTNAGG	1 cut(s)	251
BtgI	CCRYGG	1 cut(s)	341
BtsCI	GGATG	3 cut(s)	433, 517, 532
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	2 cut(s)	145, 312
Cfr13I	GGNCC	2 cut(s)	247, 259
Cfr42I	CCGCGG	1 cut(s)	344
Csp6I	GTAC	2 cut(s)	388, 415
CviAII	CATG	1 cut(s)	503
CviJI	RGCY	8 cut(s)	12, 66, 119, 206, 236, 256, 327, 442
CviKI_1	RGCY	8 cut(s)	12, 66, 119, 206, 236, 256, 327, 442
CviQI	GTAC	2 cut(s)	388, 415
DdeI	CTNAG	2 cut(s)	251, 479
DpnI	GATC	6 cut(s)	105, 158, 182, 201, 463, 477
DpnII	GATC	6 cut(s)	103, 156, 180, 199, 461, 475
EciI	GGCGGA	1 cut(s)	322
Eco105I	TACGTA	1 cut(s)	300
Eco32I	GATATC	1 cut(s)	399
Eco47I	GGWCC	2 cut(s)	247, 259
Eco81I	CCTNAGG	1 cut(s)	251
Eco88I	CYCGRG	1 cut(s)	262
EcoO109I	RGGNCCY	1 cut(s)	247
EcoRV	GATATC	1 cut(s)	399
FaeI	CATG	1 cut(s)	506
FaiI	YATR	5 cut(s)	303, 419, 504, 509, 555
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	1 cut(s)	502
FauI	CCCGC	1 cut(s)	237
Fnu4HI	GCNGC	2 cut(s)	64, 341
FokI	GGATG	3 cut(s)	440, 524, 539
Fsp4HI	GCNGC	2 cut(s)	64, 341
FspBI	CTAG	2 cut(s)	203, 315
GluI	GCNGC	2 cut(s)	64, 341
GsaI	CCCAGC	1 cut(s)	326
HapII	CCGG	2 cut(s)	13, 194
Hin1II	CATG	1 cut(s)	506
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	3 cut(s)	25, 392, 493
HpaII	CCGG	2 cut(s)	13, 194
HphI	GGTGA	1 cut(s)	572
Hpy188I	TCNGA	6 cut(s)	161, 229, 358, 466, 480, 522
Hpy188III	TCNNGA	2 cut(s)	101, 315
HpyAV	CCTTC	4 cut(s)	370, 418, 432, 481
HpyCH4III	ACNGT	3 cut(s)	140, 214, 364
HpyCH4IV	ACGT	2 cut(s)	94, 299
HpyCH4V	TGCA	3 cut(s)	63, 305, 502
HpyF3I	CTNAG	2 cut(s)	251, 479
HpySE526I	ACGT	2 cut(s)	94, 299
Hsp92II	CATG	1 cut(s)	506
KspI	CCGCGG	1 cut(s)	344
Kzo9I	GATC	6 cut(s)	103, 156, 180, 199, 461, 475
LpnPI	CCDG	8 cut(s)	26, 114, 207, 242, 263, 308, 428, 551
Lsp1109I	GCAGC	1 cut(s)	75
LweI	GCATC	1 cut(s)	517
MaeI	CTAG	2 cut(s)	203, 315
MaeII	ACGT	2 cut(s)	94, 299
MaeIII	GTNAC	1 cut(s)	150
MalI	GATC	6 cut(s)	105, 158, 182, 201, 463, 477
MboI	GATC	6 cut(s)	103, 156, 180, 199, 461, 475
MboII	GAAGA	4 cut(s)	89, 209, 298, 443
MflI	RGATCY	2 cut(s)	103, 199
MlyI	GAGTC	1 cut(s)	502
MmeI	TCCRAC	1 cut(s)	131
MnlI	CCTC	4 cut(s)	15, 246, 474, 477
MroXI	GAANNNNTTC	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	343
MspI	CCGG	2 cut(s)	13, 194
MspR9I	CCNGG	1 cut(s)	14
MvnI	CGCG	2 cut(s)	35, 343
NciI	CCSGG	1 cut(s)	14
NdeII	GATC	6 cut(s)	103, 156, 180, 199, 461, 475
NlaIII	CATG	1 cut(s)	506
NlaIV	GGNNCC	3 cut(s)	248, 261, 355
NmeAIII	GCCGAG	1 cut(s)	556
NspI	RCATGY	1 cut(s)	506
PcsI	WCGNNNNNNNCGW	1 cut(s)	392
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	2 cut(s)	25, 392
Pfl23II	CGTACG	1 cut(s)	387
PkrI	GCNGC	2 cut(s)	65, 342
Ple19I	CGATCG	1 cut(s)	464
PleI	GAGTC	1 cut(s)	501
PpsI	GAGTC	1 cut(s)	501
Ppu21I	YACGTR	1 cut(s)	300
PpuMI	RGGWCCY	1 cut(s)	247
Psp5II	RGGWCCY	1 cut(s)	247
PspFI	CCCAGC	1 cut(s)	322
PspLI	CGTACG	1 cut(s)	387
PspN4I	GGNNCC	3 cut(s)	248, 261, 355
PspPI	GGNCC	2 cut(s)	247, 259
PspPPI	RGGWCCY	1 cut(s)	247
PsuI	RGATCY	2 cut(s)	103, 199
PvuI	CGATCG	1 cut(s)	464
RsaI	GTAC	2 cut(s)	389, 416
RsaNI	GTAC	2 cut(s)	388, 415
SacII	CCGCGG	1 cut(s)	344
SatI	GCNGC	2 cut(s)	64, 341
Sau3AI	GATC	6 cut(s)	103, 156, 180, 199, 461, 475
Sau96I	GGNCC	2 cut(s)	247, 259
SchI	GAGTC	1 cut(s)	502
ScrFI	CCNGG	1 cut(s)	14
SetI	ASST	6 cut(s)	68, 97, 208, 238, 252, 302
SfaNI	GCATC	1 cut(s)	517
Sfr303I	CCGCGG	1 cut(s)	344
SgrBI	CCGCGG	1 cut(s)	344
SinI	GGWCC	2 cut(s)	247, 259
SnaBI	TACGTA	1 cut(s)	300
SsiI	CCGC	4 cut(s)	244, 333, 341, 343
SspMI	CTAG	2 cut(s)	203, 315
StyD4I	CCNGG	1 cut(s)	12
TaaI	ACNGT	3 cut(s)	140, 214, 364
TaiI	ACGT	2 cut(s)	97, 302
TaqI	TCGA	3 cut(s)	183, 395, 460
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	1 cut(s)	343
TfiI	GAWTC	2 cut(s)	25, 392
TscAI	CASTG	2 cut(s)	145, 312
TseI	GCWGC	1 cut(s)	63
TspDTI	ATGAA	2 cut(s)	305, 444
TspRI	CASTG	2 cut(s)	145, 312
VpaK11BI	GGWCC	2 cut(s)	247, 259
XbaI	TCTAGA	1 cut(s)	314
XceI	RCATGY	1 cut(s)	506
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	2 cut(s)	203, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.