Rmu_sc0001141.1_g000022

Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001141.1
OG0005494
Physical Location & Seq
Forward (+)
62635 .. 63207
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001141.1_g000022.1.cds

Sequence Viewer

Length: 573 bp
atgagcagaatcctggttttgaggaatccaatcgcgttcgtattggggttggtattggtttgcatctttgtaatactcccgctcacaatgctacatcttccagatccaaccacaacagccaccactcatcattcccacagtgataacaagttactgatcagaaagtttggggagatgataatcgaaatgttgccagaagatctagctttcatggtctttatcccatcggagaaagctttcaagcgggacctgaggctggacccgactgatagttttgttgaggagaagatgaatgatgcgtatgcaatggtttctagagtgttgggcttctcagccgtgccgcggagtattggttccgaaacggtggcgtttgggaaggagattttgtatggttcaatatcggagtttgtgctgtacataacgaaggataaagatggaaggctagttgtcaatggggttcgatcggagagagttgatctgagaaggaaggggagtcttgtgcatgttatggatggggttctgatggatgccgagttccaacaatcggttcagtatgatggtgaagaagattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

190

Amino Acids

21.42

Weight (kDa)

5.39

Isoelectric Point (pI)

52.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 82
AccII CGCG 2 cut(s) 35, 343
AciI CCGC 4 cut(s) 80, 244, 341, 343
AclWI GGATC 1 cut(s) 98
AfaI GTAC 1 cut(s) 416
AfiI CCNNNNNNNGG 3 cut(s) 256, 342, 544
AgsI TTSAA 2 cut(s) 241, 396
AjnI CCWGG 1 cut(s) 12
AjuI GAANNNNNNNTTGG 2 cut(s) 531, 563
AloI GAACNNNNNNTCC 4 cut(s) 337, 369, 518, 550
AluBI AGCT 2 cut(s) 206, 236
AluI AGCT 2 cut(s) 206, 236
AlwI GGATC 1 cut(s) 98
Asp700I GAANNNNTTC 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 247, 259
AsuHPI GGTGA 1 cut(s) 572
AvaII GGWCC 2 cut(s) 247, 259
AxyI CCTNAGG 1 cut(s) 251
BccI CCATC 5 cut(s) 232, 428, 506, 517, 551
BceAI ACGGC 1 cut(s) 320
BciT130I CCWGG 1 cut(s) 14
BclI TGATCA 1 cut(s) 156
BfaI CTAG 3 cut(s) 203, 315, 443
BglII AGATCT 1 cut(s) 199
BisI GCNGC 1 cut(s) 341
BlsI GCNGC 1 cut(s) 342
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 2 cut(s) 247, 259
BmgT120I GGNCC 2 cut(s) 247, 259
BmiI GGNNCC 3 cut(s) 248, 261, 355
BmrFI CCNGG 1 cut(s) 14
BmsI GCATC 3 cut(s) 72, 286, 517
BsaBI GATNNNNATC 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 341
BsaXI ACNNNNNCTCC 4 cut(s) 337, 367, 371, 401
Bsc4I CCNNNNNNNGG 3 cut(s) 256, 342, 544
Bse21I CCTNAGG 1 cut(s) 251
Bse3DI GCAATG 1 cut(s) 312
Bse8I GATNNNNATC 1 cut(s) 179
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 341
BseGI GGATG 2 cut(s) 517, 532
BseJI GATNNNNATC 1 cut(s) 179
BseLI CCNNNNNNNGG 3 cut(s) 256, 342, 544
BseMI GCAATG 1 cut(s) 312
BseMII CTCAG 3 cut(s) 242, 345, 470
BseRI GAGGAG 1 cut(s) 296
Bsh1236I CGCG 2 cut(s) 35, 343
Bsh1285I CGRYCG 1 cut(s) 464
BsiEI CGRYCG 1 cut(s) 464
BslFI GGGAC 1 cut(s) 260
BslI CCNNNNNNNGG 3 cut(s) 256, 342, 544
BsmFI GGGAC 1 cut(s) 260
Bsp1407I TGTACA 1 cut(s) 414
Bsp143I GATC 5 cut(s) 103, 156, 199, 461, 475
BspACI CCGC 4 cut(s) 80, 244, 341, 343
BspCNI CTCAG 3 cut(s) 243, 344, 471
BspFNI CGCG 2 cut(s) 35, 343
BspLI GGNNCC 3 cut(s) 248, 261, 355
BspPI GGATC 1 cut(s) 98
BsrBI CCGCTC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 312
BsrGI TGTACA 1 cut(s) 414
BssECI CCNNGG 1 cut(s) 341
BssMI GATC 5 cut(s) 103, 156, 199, 461, 475
Bst2UI CCWGG 1 cut(s) 14
Bst4CI ACNGT 2 cut(s) 140, 364
BstAUI TGTACA 1 cut(s) 414
BstDEI CTNAG 3 cut(s) 251, 331, 479
BstDSI CCRYGG 1 cut(s) 341
BstF5I GGATG 2 cut(s) 517, 532
BstFNI CGCG 2 cut(s) 35, 343
BstKTI GATC 5 cut(s) 106, 159, 202, 464, 478
BstMBI GATC 5 cut(s) 103, 156, 199, 461, 475
BstMCI CGRYCG 1 cut(s) 464
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstNI CCWGG 1 cut(s) 14
BstNSI RCATGY 1 cut(s) 506
BstSCI CCNGG 1 cut(s) 12
BstUI CGCG 2 cut(s) 35, 343
BstX2I RGATCY 2 cut(s) 103, 199
BstYI RGATCY 2 cut(s) 103, 199
Bsu36I CCTNAGG 1 cut(s) 251
BtgI CCRYGG 1 cut(s) 341
BtsCI GGATG 2 cut(s) 517, 532
BtsIMutI CAGTG 1 cut(s) 145
Cfr13I GGNCC 2 cut(s) 247, 259
Cfr42I CCGCGG 1 cut(s) 344
Csp6I GTAC 1 cut(s) 415
CviAII CATG 2 cut(s) 211, 503
CviJI RGCY 7 cut(s) 119, 206, 236, 256, 327, 335, 442
CviKI_1 RGCY 7 cut(s) 119, 206, 236, 256, 327, 335, 442
CviQI GTAC 1 cut(s) 415
DdeI CTNAG 3 cut(s) 251, 331, 479
DpnI GATC 5 cut(s) 105, 158, 201, 463, 477
DpnII GATC 5 cut(s) 103, 156, 199, 461, 475
Eco47I GGWCC 2 cut(s) 247, 259
Eco81I CCTNAGG 1 cut(s) 251
EcoO109I RGGNCCY 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 12
FaeI CATG 2 cut(s) 214, 506
FaiI YATR 7 cut(s) 212, 303, 390, 419, 504, 509, 555
FaqI GGGAC 1 cut(s) 260
FatI CATG 2 cut(s) 210, 502
FauI CCCGC 2 cut(s) 87, 237
FbaI TGATCA 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 341
FokI GGATG 2 cut(s) 524, 539
Fsp4HI GCNGC 1 cut(s) 341
FspBI CTAG 3 cut(s) 203, 315, 443
GluI GCNGC 1 cut(s) 341
Hin1II CATG 2 cut(s) 214, 506
HindIII AAGCTT 1 cut(s) 234
HinfI GANTC 3 cut(s) 9, 25, 493
HphI GGTGA 1 cut(s) 572
Hpy188I TCNGA 7 cut(s) 161, 229, 358, 403, 466, 480, 522
Hpy188III TCNNGA 2 cut(s) 101, 315
HpyAV CCTTC 5 cut(s) 370, 418, 432, 477, 481
HpyCH4III ACNGT 2 cut(s) 140, 364
HpyCH4V TGCA 3 cut(s) 63, 305, 502
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpyF3I CTNAG 3 cut(s) 251, 331, 479
Hsp92II CATG 2 cut(s) 214, 506
Ksp22I TGATCA 1 cut(s) 156
KspI CCGCGG 1 cut(s) 344
Kzo9I GATC 5 cut(s) 103, 156, 199, 461, 475
LpnPI CCDG 5 cut(s) 26, 114, 207, 242, 263
LweI GCATC 3 cut(s) 72, 286, 517
MaeI CTAG 3 cut(s) 203, 315, 443
MaeIII GTNAC 1 cut(s) 150
MalI GATC 5 cut(s) 105, 158, 201, 463, 477
MbiI CCGCTC 1 cut(s) 82
MboI GATC 5 cut(s) 103, 156, 199, 461, 475
MboII GAAGA 3 cut(s) 89, 209, 298
MflI RGATCY 2 cut(s) 103, 199
MlyI GAGTC 1 cut(s) 502
MmeI TCCRAC 2 cut(s) 131, 562
MnlI CCTC 3 cut(s) 15, 246, 274
MroXI GAANNNNTTC 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 343
MspR9I CCNGG 1 cut(s) 14
MvaI CCWGG 1 cut(s) 14
MvnI CGCG 2 cut(s) 35, 343
MwoI GCNNNNNNNGC 1 cut(s) 88
NdeII GATC 5 cut(s) 103, 156, 199, 461, 475
NlaIII CATG 2 cut(s) 214, 506
NlaIV GGNNCC 3 cut(s) 248, 261, 355
NmeAIII GCCGAG 1 cut(s) 556
NspI RCATGY 1 cut(s) 506
PdmI GAANNNNTTC 1 cut(s) 236
PfeI GAWTC 2 cut(s) 9, 25
PkrI GCNGC 1 cut(s) 342
Ple19I CGATCG 1 cut(s) 464
PleI GAGTC 1 cut(s) 501
PpsI GAGTC 1 cut(s) 501
PpuMI RGGWCCY 1 cut(s) 247
Psp5II RGGWCCY 1 cut(s) 247
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
PspN4I GGNNCC 3 cut(s) 248, 261, 355
PspPI GGNCC 2 cut(s) 247, 259
PspPPI RGGWCCY 1 cut(s) 247
PsuI RGATCY 2 cut(s) 103, 199
PvuI CGATCG 1 cut(s) 464
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
SacII CCGCGG 1 cut(s) 344
SatI GCNGC 1 cut(s) 341
Sau3AI GATC 5 cut(s) 103, 156, 199, 461, 475
Sau96I GGNCC 2 cut(s) 247, 259
SchI GAGTC 1 cut(s) 502
ScrFI CCNGG 1 cut(s) 14
SetI ASST 3 cut(s) 208, 238, 252
SfaNI GCATC 3 cut(s) 72, 286, 517
Sfr303I CCGCGG 1 cut(s) 344
SgrBI CCGCGG 1 cut(s) 344
SinI GGWCC 2 cut(s) 247, 259
SsiI CCGC 4 cut(s) 80, 244, 341, 343
SspMI CTAG 3 cut(s) 203, 315, 443
StyD4I CCNGG 1 cut(s) 12
TaaI ACNGT 2 cut(s) 140, 364
TaqI TCGA 2 cut(s) 183, 460
TatI WGTACW 1 cut(s) 414
TauI GCSGC 1 cut(s) 343
TfiI GAWTC 2 cut(s) 9, 25
TscAI CASTG 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 199, 305
TspRI CASTG 1 cut(s) 145
VpaK11BI GGWCC 2 cut(s) 247, 259
XbaI TCTAGA 1 cut(s) 314
XceI RCATGY 1 cut(s) 506
XmnI GAANNNNTTC 1 cut(s) 236
XspI CTAG 3 cut(s) 203, 315, 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.