Rmu_sc0017355.1_g000002

Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017355.1
OG0005494
Physical Location & Seq
Forward (+)
15220 .. 15801
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017355.1_g000002.1.cds

Sequence Viewer

Length: 582 bp
ctgggatcatcgtcaccaccgccggagctagacttcccaatcgaatggccccccgacgggaagctcagccatgactgggtccagaaccttatgtccgtcttcatcacgttcgcattgggggtggtattggtttgtagctttgtaatactcgcactcacaatactacgtcttccagatccaaccacaacagccaccactcatcattcccatagtgataacaagttactgatccgaaagtttagggagatgatgatcgaaatgttgccggaagatctagctttcacggtctttatcccatcagagaaagctttcaagcgggacctgaggctggacccgagtgatagttttgttggggagaagatgaatgatacgtatgcagtggtttctagagtgctgggcttctccgccgtgccccggagtattggttcggaaatagtggcgtttgggaaggagatttcgtatgattcgaatggctctcatcatcggcgccggcggccatggcgttggtctccactccgtcgagaaggtacgatttctgatggtgacactcgtttggattttgatgagagattgtggctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

193

Amino Acids

22.01

Weight (kDa)

6.08

Isoelectric Point (pI)

65.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 486
AciI CCGC 4 cut(s) 20, 316, 405, 493
AclWI GGATC 3 cut(s) 13, 170, 223
AcoI YGGCCR 1 cut(s) 494
AcyI GRCGYC 1 cut(s) 487
AfaI GTAC 1 cut(s) 529
AfiI CCNNNNNNNGG 5 cut(s) 56, 57, 76, 328, 414
AgsI TTSAA 1 cut(s) 313
AloI GAACNNNNNNTCC 4 cut(s) 77, 109, 409, 441
AluBI AGCT 5 cut(s) 28, 64, 138, 278, 308
AluI AGCT 5 cut(s) 28, 64, 138, 278, 308
Alw26I GTCTC 1 cut(s) 513
AlwI GGATC 3 cut(s) 13, 170, 223
Ama87I CYCGRG 1 cut(s) 334
AoxI GGCC 2 cut(s) 47, 494
Asp700I GAANNNNTTC 1 cut(s) 308
AspLEI GCGC 1 cut(s) 489
AspS9I GGNCC 4 cut(s) 48, 79, 319, 331
AsuC2I CCSGG 1 cut(s) 415
AsuHPI GGTGA 2 cut(s) 6, 554
AsuII TTCGAA 1 cut(s) 467
AvaI CYCGRG 1 cut(s) 334
AvaII GGWCC 3 cut(s) 79, 319, 331
AxyI CCTNAGG 1 cut(s) 323
BaeGI GKGCMC 1 cut(s) 414
BanI GGYRCC 1 cut(s) 486
BbsI GAAGAC 2 cut(s) 91, 161
BccI CCATC 2 cut(s) 304, 533
BceAI ACGGC 1 cut(s) 392
BcnI CCSGG 1 cut(s) 415
BcoDI GTCTC 1 cut(s) 513
BfaI CTAG 3 cut(s) 29, 275, 387
BfoI RGCGCY 1 cut(s) 490
BglII AGATCT 1 cut(s) 271
BisI GCNGC 1 cut(s) 494
BlpI GCTNAGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 495
Bme1390I CCNGG 1 cut(s) 415
Bme18I GGWCC 3 cut(s) 79, 319, 331
BmeT110I CYCGRG 1 cut(s) 334
BmgT120I GGNCC 4 cut(s) 48, 79, 319, 331
BmiI GGNNCC 5 cut(s) 50, 80, 320, 333, 488
BmrFI CCNGG 1 cut(s) 415
BmrI ACTGGG 1 cut(s) 85
BmuI ACTGGG 1 cut(s) 85
BpiI GAAGAC 2 cut(s) 91, 161
Bpu1102I GCTNAGC 1 cut(s) 65
Bpu14I TTCGAA 1 cut(s) 467
BpuMI CCSGG 1 cut(s) 415
BsaAI YACGTR 1 cut(s) 372
BsaBI GATNNNNATC 1 cut(s) 251
BsaHI GRCGYC 1 cut(s) 487
BsaI GGTCTC 1 cut(s) 513
BsaJI CCNNGG 2 cut(s) 413, 497
BsaXI ACNNNNNCTCC 4 cut(s) 409, 439, 443, 473
Bsc4I CCNNNNNNNGG 5 cut(s) 56, 57, 76, 328, 414
Bse118I RCCGGY 1 cut(s) 489
Bse1I ACTGG 1 cut(s) 80
Bse21I CCTNAGG 1 cut(s) 323
Bse8I GATNNNNATC 1 cut(s) 251
BseDI CCNNGG 2 cut(s) 413, 497
BseJI GATNNNNATC 1 cut(s) 251
BseLI CCNNNNNNNGG 5 cut(s) 56, 57, 76, 328, 414
BseMII CTCAG 2 cut(s) 79, 314
BseNI ACTGG 1 cut(s) 80
BseSI GKGCMC 1 cut(s) 414
BseYI CCCAGC 1 cut(s) 394
BshFI GGCC 2 cut(s) 49, 496
BshNI GGYRCC 1 cut(s) 486
BsiHKCI CYCGRG 1 cut(s) 334
BsiSI CCGG 4 cut(s) 23, 266, 415, 490
BslFI GGGAC 1 cut(s) 332
BslI CCNNNNNNNGG 5 cut(s) 56, 57, 76, 328, 414
BsmAI GTCTC 1 cut(s) 513
BsmFI GGGAC 1 cut(s) 332
BsnI GGCC 2 cut(s) 49, 496
Bso31I GGTCTC 1 cut(s) 513
BsoBI CYCGRG 1 cut(s) 334
Bsp119I TTCGAA 1 cut(s) 467
Bsp1286I GDGCHC 1 cut(s) 414
Bsp143I GATC 5 cut(s) 5, 175, 228, 252, 271
Bsp1720I GCTNAGC 1 cut(s) 65
Bsp19I CCATGG 1 cut(s) 497
BspACI CCGC 4 cut(s) 20, 316, 405, 493
BspANI GGCC 2 cut(s) 49, 496
BspCNI CTCAG 2 cut(s) 78, 315
BspLI GGNNCC 5 cut(s) 50, 80, 320, 333, 488
BspPI GGATC 3 cut(s) 13, 170, 223
BspT104I TTCGAA 1 cut(s) 467
BspT107I GGYRCC 1 cut(s) 486
BspTNI GGTCTC 1 cut(s) 513
BsrFI RCCGGY 1 cut(s) 489
BsrI ACTGG 1 cut(s) 80
BssAI RCCGGY 1 cut(s) 489
BssECI CCNNGG 2 cut(s) 413, 497
BssMI GATC 5 cut(s) 5, 175, 228, 252, 271
BssNI GRCGYC 1 cut(s) 487
BssT1I CCWWGG 1 cut(s) 497
Bst4CI ACNGT 1 cut(s) 286
BstACI GRCGYC 1 cut(s) 487
BstBAI YACGTR 1 cut(s) 372
BstBI TTCGAA 1 cut(s) 467
BstC8I GCNNGC 1 cut(s) 491
BstDEI CTNAG 2 cut(s) 65, 323
BstDSI CCRYGG 1 cut(s) 497
BstH2I RGCGCY 1 cut(s) 490
BstHHI GCGC 1 cut(s) 489
BstKTI GATC 5 cut(s) 8, 178, 231, 255, 274
BstMAI GTCTC 1 cut(s) 513
BstMBI GATC 5 cut(s) 5, 175, 228, 252, 271
BstMWI GCNNNNNNNGC 2 cut(s) 493, 499
BstSCI CCNGG 1 cut(s) 413
BstSLI GKGCMC 1 cut(s) 414
BstSNI TACGTA 1 cut(s) 372
BstV2I GAAGAC 2 cut(s) 91, 161
BstX2I RGATCY 2 cut(s) 175, 271
BstXI CCANNNNNNTGG 2 cut(s) 45, 504
BstYI RGATCY 2 cut(s) 175, 271
Bsu36I CCTNAGG 1 cut(s) 323
BsuRI GGCC 2 cut(s) 49, 496
BtgI CCRYGG 1 cut(s) 497
BtsI GCAGTG 1 cut(s) 384
BtsIMutI CAGTG 1 cut(s) 384
Cac8I GCNNGC 1 cut(s) 491
CfoI GCGC 1 cut(s) 489
Cfr10I RCCGGY 1 cut(s) 489
Cfr13I GGNCC 4 cut(s) 48, 79, 319, 331
Csp6I GTAC 1 cut(s) 528
CviAII CATG 2 cut(s) 71, 498
CviQI GTAC 1 cut(s) 528
DdeI CTNAG 2 cut(s) 65, 323
DinI GGCGCC 1 cut(s) 488
DpnI GATC 5 cut(s) 7, 177, 230, 254, 273
DpnII GATC 5 cut(s) 5, 175, 228, 252, 271
EaeI YGGCCR 1 cut(s) 494
EciI GGCGGA 1 cut(s) 394
Eco105I TACGTA 1 cut(s) 372
Eco130I CCWWGG 1 cut(s) 497
Eco31I GGTCTC 1 cut(s) 513
Eco47I GGWCC 3 cut(s) 79, 319, 331
Eco81I CCTNAGG 1 cut(s) 323
Eco88I CYCGRG 1 cut(s) 334
EcoO109I RGGNCCY 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 497
EgeI GGCGCC 1 cut(s) 488
EheI GGCGCC 1 cut(s) 488
ErhI CCWWGG 1 cut(s) 497
FaeI CATG 2 cut(s) 74, 501
FaiI YATR 6 cut(s) 72, 92, 210, 375, 462, 499
FaqI GGGAC 1 cut(s) 332
FatI CATG 2 cut(s) 70, 497
FauI CCCGC 1 cut(s) 309
Fnu4HI GCNGC 1 cut(s) 494
Fsp4HI GCNGC 1 cut(s) 494
FspBI CTAG 3 cut(s) 29, 275, 387
GlaI GCGC 1 cut(s) 488
GluI GCNGC 1 cut(s) 494
GsaI CCCAGC 1 cut(s) 398
HaeII RGCGCY 1 cut(s) 490
HaeIII GGCC 2 cut(s) 49, 496
HapII CCGG 4 cut(s) 23, 266, 415, 490
HhaI GCGC 1 cut(s) 489
Hin1I GRCGYC 1 cut(s) 487
Hin1II CATG 2 cut(s) 74, 501
Hin6I GCGC 1 cut(s) 487
HinP1I GCGC 1 cut(s) 487
HindIII AAGCTT 1 cut(s) 306
HinfI GANTC 1 cut(s) 464
HpaII CCGG 4 cut(s) 23, 266, 415, 490
HphI GGTGA 2 cut(s) 6, 554
Hpy188I TCNGA 5 cut(s) 233, 301, 430, 538, 581
Hpy188III TCNNGA 4 cut(s) 82, 173, 387, 521
Hpy99I CGWCG 2 cut(s) 59, 522
HpyAV CCTTC 2 cut(s) 442, 518
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4IV ACGT 3 cut(s) 107, 166, 371
HpyCH4V TGCA 1 cut(s) 377
HpyF10VI GCNNNNNNNGC 2 cut(s) 493, 499
HpyF3I CTNAG 2 cut(s) 65, 323
HpySE526I ACGT 3 cut(s) 107, 166, 371
Hsp92I GRCGYC 1 cut(s) 487
Hsp92II CATG 2 cut(s) 74, 501
HspAI GCGC 1 cut(s) 487
KasI GGCGCC 1 cut(s) 486
KroI GCCGGC 1 cut(s) 489
KroNI GCCGGC 1 cut(s) 491
Kzo9I GATC 5 cut(s) 5, 175, 228, 252, 271
LmnI GCTCC 1 cut(s) 25
MaeI CTAG 3 cut(s) 29, 275, 387
MaeII ACGT 3 cut(s) 107, 166, 371
MaeIII GTNAC 3 cut(s) 12, 222, 542
MalI GATC 5 cut(s) 7, 177, 230, 254, 273
MboI GATC 5 cut(s) 5, 175, 228, 252, 271
MboII GAAGA 4 cut(s) 91, 161, 281, 370
MflI RGATCY 2 cut(s) 175, 271
MhlI GDGCHC 1 cut(s) 414
Mly113I GGCGCC 1 cut(s) 487
MmeI TCCRAC 1 cut(s) 203
MnlI CCTC 1 cut(s) 318
MreI CGCCGGCG 1 cut(s) 489
MroNI GCCGGC 1 cut(s) 489
MroXI GAANNNNTTC 1 cut(s) 308
MspI CCGG 4 cut(s) 23, 266, 415, 490
MspR9I CCNGG 1 cut(s) 415
MwoI GCNNNNNNNGC 2 cut(s) 493, 499
NaeI GCCGGC 1 cut(s) 491
NarI GGCGCC 1 cut(s) 487
NciI CCSGG 1 cut(s) 415
NcoI CCATGG 1 cut(s) 497
NdeII GATC 5 cut(s) 5, 175, 228, 252, 271
NgoMIV GCCGGC 1 cut(s) 489
NlaIII CATG 2 cut(s) 74, 501
NlaIV GGNNCC 5 cut(s) 50, 80, 320, 333, 488
NmuCI GTSAC 2 cut(s) 12, 542
NspV TTCGAA 1 cut(s) 467
PcsI WCGNNNNNNNCGW 1 cut(s) 464
PdiI GCCGGC 1 cut(s) 491
PdmI GAANNNNTTC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 464
PflFI GACNNNGTC 1 cut(s) 77
PkrI GCNGC 1 cut(s) 495
PluTI GGCGCC 1 cut(s) 490
Ppu21I YACGTR 1 cut(s) 372
PpuMI RGGWCCY 1 cut(s) 319
Psp5II RGGWCCY 1 cut(s) 319
PspFI CCCAGC 1 cut(s) 394
PspN4I GGNNCC 5 cut(s) 50, 80, 320, 333, 488
PspPI GGNCC 4 cut(s) 48, 79, 319, 331
PspPPI RGGWCCY 1 cut(s) 319
PsuI RGATCY 2 cut(s) 175, 271
PsyI GACNNNGTC 1 cut(s) 77
RsaI GTAC 1 cut(s) 529
RsaNI GTAC 1 cut(s) 528
SatI GCNGC 1 cut(s) 494
Sau3AI GATC 5 cut(s) 5, 175, 228, 252, 271
Sau96I GGNCC 4 cut(s) 48, 79, 319, 331
ScrFI CCNGG 1 cut(s) 415
SduI GDGCHC 1 cut(s) 414
SfoI GGCGCC 1 cut(s) 488
SfuI TTCGAA 1 cut(s) 467
SgrAI CRCCGGYG 1 cut(s) 489
SinI GGWCC 3 cut(s) 79, 319, 331
SnaBI TACGTA 1 cut(s) 372
SsiI CCGC 4 cut(s) 20, 316, 405, 493
SspDI GGCGCC 1 cut(s) 486
SspMI CTAG 3 cut(s) 29, 275, 387
StyD4I CCNGG 1 cut(s) 413
StyI CCWWGG 1 cut(s) 497
TaaI ACNGT 1 cut(s) 286
TaiI ACGT 3 cut(s) 110, 169, 374
TaqI TCGA 4 cut(s) 42, 255, 467, 520
TauI GCSGC 1 cut(s) 496
TfiI GAWTC 1 cut(s) 464
TscAI CASTG 1 cut(s) 384
TseFI GTSAC 2 cut(s) 12, 542
Tsp45I GTSAC 2 cut(s) 12, 542
TspDTI ATGAA 2 cut(s) 91, 377
TspGWI ACGGA 2 cut(s) 85, 506
TspRI CASTG 1 cut(s) 384
Tth111I GACNNNGTC 1 cut(s) 77
VpaK11BI GGWCC 3 cut(s) 79, 319, 331
XbaI TCTAGA 1 cut(s) 386
XmnI GAANNNNTTC 1 cut(s) 308
XspI CTAG 3 cut(s) 29, 275, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.