Rh2DG185300

Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0005494
Physical Location & Seq
Forward (+)
16517356 .. 16517841
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG185300.1

Sequence Viewer

Length: 486 bp
ATGCTACGTCTTCTAGATCCAACCACAACAGCCACCACTCATCATTCCCACAGTGATAACAAGTTACTGATCGGAAAGTTTGGGGAGATGATGATCGAAATGTTGCCAGAAGATCTAGCTTTCACGGTCTTTATCCCATCGGAGAAAGCTTTCAAGCGGGACCTGAGGCTGGACCCGACTGATAGTTTTGTTGGGGAGAAGATGAATGATACGTATGCAGTGGTTTCTAGAGTGCTAGGCTTCTCAGCCGTGCCGCGAAGTATTGGTTCCGAAACGGTGGCGTTTGGGAAGGAGATTTCGTATGGTTCGATATCGGGGTTTGTGCTGTACATAACGAAGGATGAAGATGGAAGGCTGGTTGTCAATGGGGTTCGATCGGAGAGAGTTGATCTGAGGACGAAGGGGACTCTTATGCATGTTATGGATGGGGTTCTGATGGATGCCGAGTTCCAGCAATCGGTTCAGTATGATGGTGAAGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

161

Amino Acids

17.96

Weight (kDa)

4.89

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 34 - 146 5.2e-07 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 256
AciI CCGC 2 cut(s) 157, 254
AclWI GGATC 1 cut(s) 11
AfaI GTAC 1 cut(s) 329
AfiI CCNNNNNNNGG 2 cut(s) 169, 457
AgsI TTSAA 1 cut(s) 154
AloI GAACNNNNNNTCC 2 cut(s) 431, 463
AluBI AGCT 2 cut(s) 119, 149
AluI AGCT 2 cut(s) 119, 149
AlwI GGATC 1 cut(s) 11
Asp700I GAANNNNTTC 1 cut(s) 149
AspS9I GGNCC 2 cut(s) 160, 172
AsuHPI GGTGA 1 cut(s) 485
AvaII GGWCC 2 cut(s) 160, 172
AxyI CCTNAGG 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 2
BccI CCATC 5 cut(s) 145, 341, 419, 430, 464
BceAI ACGGC 1 cut(s) 233
BfaI CTAG 4 cut(s) 14, 116, 228, 236
BglII AGATCT 1 cut(s) 112
BisI GCNGC 1 cut(s) 254
BlsI GCNGC 1 cut(s) 255
Bme18I GGWCC 2 cut(s) 160, 172
BmgT120I GGNCC 2 cut(s) 160, 172
BmiI GGNNCC 3 cut(s) 161, 174, 268
BmsI GCATC 1 cut(s) 430
BpiI GAAGAC 1 cut(s) 2
BsaAI YACGTR 1 cut(s) 213
BsaBI GATNNNNATC 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 457
Bse21I CCTNAGG 1 cut(s) 164
Bse8I GATNNNNATC 1 cut(s) 92
BseGI GGATG 3 cut(s) 346, 430, 445
BseJI GATNNNNATC 1 cut(s) 92
BseLI CCNNNNNNNGG 2 cut(s) 169, 457
BseMII CTCAG 3 cut(s) 155, 258, 383
Bsh1236I CGCG 1 cut(s) 256
Bsh1285I CGRYCG 1 cut(s) 377
BsiEI CGRYCG 1 cut(s) 377
BslFI GGGAC 2 cut(s) 173, 418
BslI CCNNNNNNNGG 2 cut(s) 169, 457
BsmFI GGGAC 2 cut(s) 173, 418
Bsp1407I TGTACA 1 cut(s) 327
Bsp143I GATC 6 cut(s) 16, 69, 93, 112, 374, 388
BspACI CCGC 2 cut(s) 157, 254
BspCNI CTCAG 3 cut(s) 156, 257, 384
BspFNI CGCG 1 cut(s) 256
BspLI GGNNCC 3 cut(s) 161, 174, 268
BspPI GGATC 1 cut(s) 11
BsrGI TGTACA 1 cut(s) 327
BssMI GATC 6 cut(s) 16, 69, 93, 112, 374, 388
Bst4CI ACNGT 3 cut(s) 53, 127, 277
BstAUI TGTACA 1 cut(s) 327
BstBAI YACGTR 1 cut(s) 213
BstDEI CTNAG 3 cut(s) 164, 244, 392
BstF5I GGATG 3 cut(s) 346, 430, 445
BstFNI CGCG 1 cut(s) 256
BstKTI GATC 6 cut(s) 19, 72, 96, 115, 377, 391
BstMBI GATC 6 cut(s) 16, 69, 93, 112, 374, 388
BstMCI CGRYCG 1 cut(s) 377
BstNSI RCATGY 1 cut(s) 419
BstSNI TACGTA 1 cut(s) 213
BstUI CGCG 1 cut(s) 256
BstV2I GAAGAC 1 cut(s) 2
BstX2I RGATCY 2 cut(s) 16, 112
BstYI RGATCY 2 cut(s) 16, 112
Bsu36I CCTNAGG 1 cut(s) 164
BtsCI GGATG 3 cut(s) 346, 430, 445
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 58, 225
Cfr13I GGNCC 2 cut(s) 160, 172
Csp6I GTAC 1 cut(s) 328
CviAII CATG 1 cut(s) 416
CviJI RGCY 7 cut(s) 32, 119, 149, 169, 240, 248, 355
CviKI_1 RGCY 7 cut(s) 32, 119, 149, 169, 240, 248, 355
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 3 cut(s) 164, 244, 392
DpnI GATC 6 cut(s) 18, 71, 95, 114, 376, 390
DpnII GATC 6 cut(s) 16, 69, 93, 112, 374, 388
Eco105I TACGTA 1 cut(s) 213
Eco32I GATATC 1 cut(s) 312
Eco47I GGWCC 2 cut(s) 160, 172
Eco81I CCTNAGG 1 cut(s) 164
EcoO109I RGGNCCY 1 cut(s) 160
EcoRV GATATC 1 cut(s) 312
EcoT22I ATGCAT 1 cut(s) 417
FaeI CATG 1 cut(s) 419
FaiI YATR 7 cut(s) 216, 303, 332, 413, 417, 422, 468
FaqI GGGAC 2 cut(s) 173, 418
FatI CATG 1 cut(s) 415
FauI CCCGC 1 cut(s) 150
Fnu4HI GCNGC 1 cut(s) 254
FokI GGATG 3 cut(s) 353, 437, 452
Fsp4HI GCNGC 1 cut(s) 254
FspBI CTAG 4 cut(s) 14, 116, 228, 236
GluI GCNGC 1 cut(s) 254
Hin1II CATG 1 cut(s) 419
HindIII AAGCTT 1 cut(s) 147
HinfI GANTC 1 cut(s) 406
HphI GGTGA 1 cut(s) 485
Hpy188I TCNGA 6 cut(s) 74, 142, 271, 379, 393, 435
Hpy188III TCNNGA 2 cut(s) 14, 228
HpyAV CCTTC 4 cut(s) 283, 331, 345, 394
HpyCH4III ACNGT 3 cut(s) 53, 127, 277
HpyCH4IV ACGT 2 cut(s) 7, 212
HpyCH4V TGCA 2 cut(s) 218, 415
HpyF3I CTNAG 3 cut(s) 164, 244, 392
HpySE526I ACGT 2 cut(s) 7, 212
Hsp92II CATG 1 cut(s) 419
Kzo9I GATC 6 cut(s) 16, 69, 93, 112, 374, 388
LpnPI CCDG 5 cut(s) 120, 155, 176, 341, 464
LweI GCATC 1 cut(s) 430
MaeI CTAG 4 cut(s) 14, 116, 228, 236
MaeII ACGT 2 cut(s) 7, 212
MaeIII GTNAC 1 cut(s) 63
MalI GATC 6 cut(s) 18, 71, 95, 114, 376, 390
MboI GATC 6 cut(s) 16, 69, 93, 112, 374, 388
MboII GAAGA 3 cut(s) 122, 211, 356
MflI RGATCY 2 cut(s) 16, 112
MlyI GAGTC 1 cut(s) 400
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 2 cut(s) 159, 387
Mph1103I ATGCAT 1 cut(s) 417
MroXI GAANNNNTTC 1 cut(s) 149
MvnI CGCG 1 cut(s) 256
NdeII GATC 6 cut(s) 16, 69, 93, 112, 374, 388
NlaIII CATG 1 cut(s) 419
NlaIV GGNNCC 3 cut(s) 161, 174, 268
NmeAIII GCCGAG 1 cut(s) 469
NsiI ATGCAT 1 cut(s) 417
NspI RCATGY 1 cut(s) 419
PcsI WCGNNNNNNNCGW 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 255
Ple19I CGATCG 1 cut(s) 377
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
Ppu21I YACGTR 1 cut(s) 213
PpuMI RGGWCCY 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 160
PspN4I GGNNCC 3 cut(s) 161, 174, 268
PspPI GGNCC 2 cut(s) 160, 172
PspPPI RGGWCCY 1 cut(s) 160
PsuI RGATCY 2 cut(s) 16, 112
PvuI CGATCG 1 cut(s) 377
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
SatI GCNGC 1 cut(s) 254
Sau3AI GATC 6 cut(s) 16, 69, 93, 112, 374, 388
Sau96I GGNCC 2 cut(s) 160, 172
SchI GAGTC 1 cut(s) 400
SetI ASST 5 cut(s) 10, 121, 151, 165, 215
SfaNI GCATC 1 cut(s) 430
SinI GGWCC 2 cut(s) 160, 172
SnaBI TACGTA 1 cut(s) 213
SsiI CCGC 2 cut(s) 157, 254
SspMI CTAG 4 cut(s) 14, 116, 228, 236
TaaI ACNGT 3 cut(s) 53, 127, 277
TaiI ACGT 2 cut(s) 10, 215
TaqI TCGA 3 cut(s) 96, 308, 373
TatI WGTACW 1 cut(s) 327
TauI GCSGC 1 cut(s) 256
TscAI CASTG 2 cut(s) 58, 225
TspDTI ATGAA 2 cut(s) 218, 357
TspRI CASTG 2 cut(s) 58, 225
VpaK11BI GGWCC 2 cut(s) 160, 172
XbaI TCTAGA 2 cut(s) 13, 227
XceI RCATGY 1 cut(s) 419
XmnI GAANNNNTTC 1 cut(s) 149
XspI CTAG 4 cut(s) 14, 116, 228, 236
Zsp2I ATGCAT 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.