RLG00000034361

Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005494
Physical Location & Seq
Forward (+)
41425568 .. 41429960
4393 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034361

Sequence Viewer

Length: 846 bp
ATGCTACGTCTTCCAGATCCAACCATAACAGCCACCACTCATCATTCCCACAGTGATAACAAGTTATTGATCGGAAAGTTTGGGGAGATGATGATCGAAATGTTGCCGGAAGATCTAGCTTTCACTGTCTTTATCCCATCAGAGAAAGCTTTCAAGTGGGACCTGAGGCTGGACCCGACTGATAGTTTTGTTAGGGAGAAGATGAATGATACGTATGCAGTGGTTTCTAGAGTGCTGGGCTTCTCAGCCGTGCTACGGAGTATTGCTTCCGAAACGGTGGCATTTGGGAAGGAGATTTCGTATGGTTCGATATTGGGGTTTGTGTTGTACATAACGAAGGATGAAGATGGAAGGCTGGTTGTCAATGGGGTTCGATCGGAGAGAGTTGATCTGAGGAGGAAGGGGAGTCTTGTGCATGTTATGGATGGGGTTCTGATGGATGCCGAGTTCCAGCAATCGGTTCAGTATGATGGTGAAGAAGATCGATCGATGTTTGGTGTTTGGTTGTGTTTGGGAGGCAAGCTGAAGAAGTCACCATCCCGCAAGCCGCCGCCGACTGGTTACTCCTCTATGACATCGCCGACTTCAGCTCCTCCTCGAAGAGAGAGACCTTGCGGCTTCAGTCCCTCCGTCGTCTCTATTGGCACCATGTACTACTGGAATTTGGGTCTCCGGCTCCGCTTGTGGGTTTCAGTCGCTAGATCGAACAAGGAGGTTGAAGCTGGAGTGCCGAAGGTTGAAGATGGAGAAGAGCACAACTGGTTGCAATTGCAGCGGAGCGGGTCCGCGTTGCATCAACGGAGATCTCGCGTTTTCGCTTTGCTCATCATCAGATCTCACCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

282

Amino Acids

31.65

Weight (kDa)

9.02

Isoelectric Point (pI)

62.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 34 - 146 6.2e-06 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 644
AccBSI CCGCTC 1 cut(s) 780
AccII CGCG 2 cut(s) 788, 810
AciI CCGC 8 cut(s) 541, 548, 551, 615, 679, 775, 780, 786
AclWI GGATC 1 cut(s) 11
AcsI RAATTY 1 cut(s) 661
AcuI CTGAAG 3 cut(s) 545, 570, 604
AfaI GTAC 2 cut(s) 329, 653
AfiI CCNNNNNNNGG 5 cut(s) 169, 255, 457, 557, 685
AgsI TTSAA 3 cut(s) 154, 719, 740
AloI GAACNNNNNNTCC 2 cut(s) 431, 463
AluBI AGCT 5 cut(s) 119, 149, 523, 590, 722
AluI AGCT 5 cut(s) 119, 149, 523, 590, 722
Alw21I GWGCWC 1 cut(s) 756
Alw26I GTCTC 3 cut(s) 601, 640, 674
AlwI GGATC 1 cut(s) 11
ApeKI GCWGC 1 cut(s) 772
ApoI RAATTY 1 cut(s) 661
Asp700I GAANNNNTTC 1 cut(s) 149
AspS9I GGNCC 3 cut(s) 160, 172, 783
AsuHPI GGTGA 3 cut(s) 485, 525, 830
AvaII GGWCC 3 cut(s) 160, 172, 783
AxyI CCTNAGG 1 cut(s) 164
BanI GGYRCC 1 cut(s) 644
BbsI GAAGAC 1 cut(s) 2
Bbv12I GWGCWC 1 cut(s) 756
BbvI GCAGC 1 cut(s) 784
BccI CCATC 7 cut(s) 145, 341, 419, 430, 464, 544, 737
BceAI ACGGC 1 cut(s) 233
BcoDI GTCTC 3 cut(s) 601, 640, 674
BfaI CTAG 3 cut(s) 116, 228, 699
BglII AGATCT 3 cut(s) 112, 803, 833
BisI GCNGC 4 cut(s) 548, 551, 616, 773
BlsI GCNGC 4 cut(s) 549, 552, 617, 774
Bme18I GGWCC 3 cut(s) 160, 172, 783
BmgT120I GGNCC 3 cut(s) 160, 172, 783
BmiI GGNNCC 5 cut(s) 161, 174, 646, 677, 784
BmsI GCATC 2 cut(s) 430, 802
BpiI GAAGAC 1 cut(s) 2
BpmI CTGGAG 1 cut(s) 744
Bsa29I ATCGAT 2 cut(s) 484, 488
BsaAI YACGTR 1 cut(s) 213
BsaBI GATNNNNATC 1 cut(s) 92
BsaI GGTCTC 2 cut(s) 601, 674
BsaXI ACNNNNNCTCC 4 cut(s) 284, 314, 574, 604
Bsc4I CCNNNNNNNGG 5 cut(s) 169, 255, 457, 557, 685
Bse1I ACTGG 3 cut(s) 562, 662, 764
Bse21I CCTNAGG 1 cut(s) 164
Bse8I GATNNNNATC 1 cut(s) 92
BseCI ATCGAT 2 cut(s) 484, 488
BseGI GGATG 4 cut(s) 346, 430, 445, 536
BseJI GATNNNNATC 1 cut(s) 92
BseLI CCNNNNNNNGG 5 cut(s) 169, 255, 457, 557, 685
BseMII CTCAG 3 cut(s) 155, 258, 383
BseNI ACTGG 3 cut(s) 562, 662, 764
BseRI GAGGAG 4 cut(s) 409, 556, 582, 585
BseXI GCAGC 1 cut(s) 784
BseYI CCCAGC 1 cut(s) 235
Bsh1236I CGCG 2 cut(s) 788, 810
Bsh1285I CGRYCG 2 cut(s) 377, 488
BshNI GGYRCC 1 cut(s) 644
BshVI ATCGAT 2 cut(s) 484, 488
BsiEI CGRYCG 2 cut(s) 377, 488
BsiHKAI GWGCWC 1 cut(s) 756
BsiSI CCGG 2 cut(s) 107, 673
BslFI GGGAC 2 cut(s) 173, 609
BslI CCNNNNNNNGG 5 cut(s) 169, 255, 457, 557, 685
BsmAI GTCTC 3 cut(s) 601, 640, 674
BsmBI CGTCTC 1 cut(s) 640
BsmFI GGGAC 2 cut(s) 173, 609
Bso31I GGTCTC 2 cut(s) 601, 674
Bsp1286I GDGCHC 1 cut(s) 756
Bsp1407I TGTACA 1 cut(s) 327
BspACI CCGC 8 cut(s) 541, 548, 551, 615, 679, 775, 780, 786
BspCNI CTCAG 3 cut(s) 156, 257, 384
BspDI ATCGAT 2 cut(s) 484, 488
BspFNI CGCG 2 cut(s) 788, 810
BspLI GGNNCC 5 cut(s) 161, 174, 646, 677, 784
BspPI GGATC 1 cut(s) 11
BspQI GCTCTTC 1 cut(s) 744
BspT107I GGYRCC 1 cut(s) 644
BspTNI GGTCTC 2 cut(s) 601, 674
BsrBI CCGCTC 1 cut(s) 780
BsrGI TGTACA 1 cut(s) 327
BsrI ACTGG 3 cut(s) 562, 662, 764
Bst4CI ACNGT 3 cut(s) 53, 127, 277
Bst6I CTCTTC 2 cut(s) 595, 744
BstAUI TGTACA 1 cut(s) 327
BstBAI YACGTR 1 cut(s) 213
BstC8I GCNNGC 2 cut(s) 521, 545
BstDEI CTNAG 3 cut(s) 164, 244, 392
BstF5I GGATG 4 cut(s) 346, 430, 445, 536
BstFNI CGCG 2 cut(s) 788, 810
BstMAI GTCTC 3 cut(s) 601, 640, 674
BstMCI CGRYCG 2 cut(s) 377, 488
BstMWI GCNNNNNNNGC 1 cut(s) 772
BstNSI RCATGY 1 cut(s) 419
BstSNI TACGTA 1 cut(s) 213
BstUI CGCG 2 cut(s) 788, 810
BstV1I GCAGC 1 cut(s) 784
BstV2I GAAGAC 1 cut(s) 2
BstX2I RGATCY 4 cut(s) 16, 112, 803, 833
BstYI RGATCY 4 cut(s) 16, 112, 803, 833
Bsu15I ATCGAT 2 cut(s) 484, 488
Bsu36I CCTNAGG 1 cut(s) 164
BsuTUI ATCGAT 2 cut(s) 484, 488
BtgZI GCGATG 1 cut(s) 561
BtsCI GGATG 4 cut(s) 346, 430, 445, 536
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 3 cut(s) 58, 123, 225
Cac8I GCNNGC 2 cut(s) 521, 545
Cfr13I GGNCC 3 cut(s) 160, 172, 783
ClaI ATCGAT 2 cut(s) 484, 488
Csp6I GTAC 2 cut(s) 328, 652
CviAII CATG 2 cut(s) 416, 649
CviQI GTAC 2 cut(s) 328, 652
DdeI CTNAG 3 cut(s) 164, 244, 392
Eam1104I CTCTTC 2 cut(s) 595, 744
EarI CTCTTC 2 cut(s) 595, 744
Eco105I TACGTA 1 cut(s) 213
Eco31I GGTCTC 2 cut(s) 601, 674
Eco47I GGWCC 3 cut(s) 160, 172, 783
Eco57I CTGAAG 3 cut(s) 545, 570, 604
Eco81I CCTNAGG 1 cut(s) 164
EcoO109I RGGNCCY 1 cut(s) 160
Esp3I CGTCTC 1 cut(s) 640
FaeI CATG 2 cut(s) 419, 652
FaiI YATR 9 cut(s) 26, 216, 303, 332, 417, 422, 468, 572, 650
FaqI GGGAC 2 cut(s) 173, 609
FatI CATG 2 cut(s) 415, 648
FauI CCCGC 2 cut(s) 548, 773
Fnu4HI GCNGC 4 cut(s) 548, 551, 616, 773
FokI GGATG 4 cut(s) 353, 437, 452, 523
Fsp4HI GCNGC 4 cut(s) 548, 551, 616, 773
FspBI CTAG 3 cut(s) 116, 228, 699
GluI GCNGC 4 cut(s) 548, 551, 616, 773
GsaI CCCAGC 1 cut(s) 239
GsuI CTGGAG 1 cut(s) 744
HapII CCGG 2 cut(s) 107, 673
Hin1II CATG 2 cut(s) 419, 652
HindIII AAGCTT 1 cut(s) 147
HinfI GANTC 1 cut(s) 406
HpaII CCGG 2 cut(s) 107, 673
HphI GGTGA 3 cut(s) 485, 525, 830
Hpy188I TCNGA 7 cut(s) 74, 142, 271, 379, 393, 435, 833
Hpy188III TCNNGA 2 cut(s) 14, 228
Hpy99I CGWCG 1 cut(s) 635
HpyAV CCTTC 5 cut(s) 283, 331, 345, 394, 727
HpyCH4III ACNGT 3 cut(s) 53, 127, 277
HpyCH4IV ACGT 2 cut(s) 7, 212
HpyCH4V TGCA 5 cut(s) 218, 415, 766, 772, 793
HpyF10VI GCNNNNNNNGC 1 cut(s) 772
HpyF3I CTNAG 3 cut(s) 164, 244, 392
HpySE526I ACGT 2 cut(s) 7, 212
Hsp92II CATG 2 cut(s) 419, 652
LguI GCTCTTC 1 cut(s) 744
LmnI GCTCC 3 cut(s) 595, 681, 777
Lsp1109I GCAGC 1 cut(s) 784
LweI GCATC 2 cut(s) 430, 802
MaeI CTAG 3 cut(s) 116, 228, 699
MaeII ACGT 2 cut(s) 7, 212
MaeIII GTNAC 2 cut(s) 531, 560
MbiI CCGCTC 1 cut(s) 780
MboII GAAGA 9 cut(s) 122, 211, 356, 488, 491, 538, 612, 752, 761
MfeI CAATTG 1 cut(s) 767
MflI RGATCY 4 cut(s) 16, 112, 803, 833
MhlI GDGCHC 1 cut(s) 756
MluCI AATT 2 cut(s) 661, 767
MlyI GAGTC 1 cut(s) 415
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 9 cut(s) 159, 387, 390, 509, 577, 603, 606, 637, 706
MroXI GAANNNNTTC 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 775
MspI CCGG 2 cut(s) 107, 673
MunI CAATTG 1 cut(s) 767
MvnI CGCG 2 cut(s) 788, 810
MwoI GCNNNNNNNGC 1 cut(s) 772
NlaIII CATG 2 cut(s) 419, 652
NlaIV GGNNCC 5 cut(s) 161, 174, 646, 677, 784
NmeAIII GCCGAG 1 cut(s) 469
NmuCI GTSAC 1 cut(s) 531
NspI RCATGY 1 cut(s) 419
PciSI GCTCTTC 1 cut(s) 744
PcsI WCGNNNNNNNCGW 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 149
PkrI GCNGC 4 cut(s) 549, 552, 617, 774
Ple19I CGATCG 2 cut(s) 377, 488
PleI GAGTC 1 cut(s) 414
PpsI GAGTC 1 cut(s) 414
Ppu21I YACGTR 1 cut(s) 213
PpuMI RGGWCCY 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 160
PspFI CCCAGC 1 cut(s) 235
PspN4I GGNNCC 5 cut(s) 161, 174, 646, 677, 784
PspPI GGNCC 3 cut(s) 160, 172, 783
PspPPI RGGWCCY 1 cut(s) 160
PsuI RGATCY 4 cut(s) 16, 112, 803, 833
PvuI CGATCG 2 cut(s) 377, 488
RsaI GTAC 2 cut(s) 329, 653
RsaNI GTAC 2 cut(s) 328, 652
SapI GCTCTTC 1 cut(s) 744
SatI GCNGC 4 cut(s) 548, 551, 616, 773
Sau96I GGNCC 3 cut(s) 160, 172, 783
SchI GAGTC 1 cut(s) 415
SduI GDGCHC 1 cut(s) 756
SfaNI GCATC 2 cut(s) 430, 802
SinI GGWCC 3 cut(s) 160, 172, 783
SnaBI TACGTA 1 cut(s) 213
Sse9I AATT 2 cut(s) 661, 767
SsiI CCGC 8 cut(s) 541, 548, 551, 615, 679, 775, 780, 786
SspMI CTAG 3 cut(s) 116, 228, 699
TaaI ACNGT 3 cut(s) 53, 127, 277
TaiI ACGT 2 cut(s) 10, 215
TaqI TCGA 7 cut(s) 96, 308, 373, 484, 488, 598, 704
TasI AATT 2 cut(s) 661, 767
TatI WGTACW 2 cut(s) 327, 651
TauI GCSGC 3 cut(s) 550, 553, 618
TscAI CASTG 3 cut(s) 58, 130, 225
TseFI GTSAC 1 cut(s) 531
TseI GCWGC 1 cut(s) 772
Tsp45I GTSAC 1 cut(s) 531
TspDTI ATGAA 2 cut(s) 218, 357
TspGWI ACGGA 3 cut(s) 271, 619, 814
TspRI CASTG 3 cut(s) 58, 130, 225
VpaK11BI GGWCC 3 cut(s) 160, 172, 783
XapI RAATTY 1 cut(s) 661
XbaI TCTAGA 1 cut(s) 227
XceI RCATGY 1 cut(s) 419
XmnI GAANNNNTTC 1 cut(s) 149
XspI CTAG 3 cut(s) 116, 228, 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.