Rmu_ssc0000484.1_g000025

Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000484.1
OG0005494
Physical Location & Seq
Forward (+)
100848 .. 101333
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000484.1_g000025.1.cds

Sequence Viewer

Length: 486 bp
atgctacgtcttccagatccaaccacaacagccaccactcatcattcccacagtgataacaagttactgatcggaaagtttggggagatgatgatcgaaatgttgccggaagatctagctttcacggtctttctcccatcggagaaagctttcaagcgggacctgaggctggacccgagtgatagttttgtgggggagaagatgaatgatacgtatgcagtggtttctagagtgctggggttctccgccgtgccgcggagtattgattccgaaacggtggcgtgtgggaaggagatttcgtatgattcgatatcggggtttgtgctgtacataacgaaggatgaagatggaaggctggttgtcaatggggttcgatcggagagagttgatctgaggaggaaggggagtcttgtgcatgtcatggatggggttctgatggatgccgagttccagcaatcggttcagtatgatggtgaagaagattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

161

Amino Acids

18.01

Weight (kDa)

4.82

Isoelectric Point (pI)

55.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 256
AciI CCGC 4 cut(s) 157, 246, 254, 256
AclWI GGATC 1 cut(s) 11
AfaI GTAC 1 cut(s) 329
AfiI CCNNNNNNNGG 3 cut(s) 169, 255, 457
AgsI TTSAA 1 cut(s) 154
AloI GAACNNNNNNTCC 2 cut(s) 431, 463
AluBI AGCT 2 cut(s) 119, 149
AluI AGCT 2 cut(s) 119, 149
AlwI GGATC 1 cut(s) 11
Ama87I CYCGRG 1 cut(s) 175
Asp700I GAANNNNTTC 1 cut(s) 149
AspS9I GGNCC 2 cut(s) 160, 172
AsuHPI GGTGA 1 cut(s) 485
AvaI CYCGRG 1 cut(s) 175
AvaII GGWCC 2 cut(s) 160, 172
AxyI CCTNAGG 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 2
BccI CCATC 5 cut(s) 145, 341, 419, 430, 464
BceAI ACGGC 1 cut(s) 233
BfaI CTAG 2 cut(s) 116, 228
BglII AGATCT 1 cut(s) 112
BisI GCNGC 1 cut(s) 254
BlsI GCNGC 1 cut(s) 255
Bme18I GGWCC 2 cut(s) 160, 172
BmeT110I CYCGRG 1 cut(s) 175
BmgT120I GGNCC 2 cut(s) 160, 172
BmiI GGNNCC 2 cut(s) 161, 174
BmsI GCATC 1 cut(s) 430
BpiI GAAGAC 1 cut(s) 2
BsaAI YACGTR 1 cut(s) 213
BsaBI GATNNNNATC 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 254
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 3 cut(s) 169, 255, 457
Bse21I CCTNAGG 1 cut(s) 164
Bse8I GATNNNNATC 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 3 cut(s) 346, 430, 445
BseJI GATNNNNATC 1 cut(s) 92
BseLI CCNNNNNNNGG 3 cut(s) 169, 255, 457
BseMII CTCAG 2 cut(s) 155, 383
BseRI GAGGAG 1 cut(s) 409
BseYI CCCAGC 1 cut(s) 235
Bsh1236I CGCG 1 cut(s) 256
Bsh1285I CGRYCG 1 cut(s) 377
BsiEI CGRYCG 1 cut(s) 377
BsiHKCI CYCGRG 1 cut(s) 175
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 3 cut(s) 169, 255, 457
BsmFI GGGAC 1 cut(s) 173
BsoBI CYCGRG 1 cut(s) 175
Bsp1407I TGTACA 1 cut(s) 327
Bsp143I GATC 6 cut(s) 16, 69, 93, 112, 374, 388
BspACI CCGC 4 cut(s) 157, 246, 254, 256
BspCNI CTCAG 2 cut(s) 156, 384
BspFNI CGCG 1 cut(s) 256
BspLI GGNNCC 2 cut(s) 161, 174
BspPI GGATC 1 cut(s) 11
BsrGI TGTACA 1 cut(s) 327
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 6 cut(s) 16, 69, 93, 112, 374, 388
Bst4CI ACNGT 3 cut(s) 53, 127, 277
BstAUI TGTACA 1 cut(s) 327
BstBAI YACGTR 1 cut(s) 213
BstDEI CTNAG 2 cut(s) 164, 392
BstDSI CCRYGG 1 cut(s) 254
BstF5I GGATG 3 cut(s) 346, 430, 445
BstFNI CGCG 1 cut(s) 256
BstKTI GATC 6 cut(s) 19, 72, 96, 115, 377, 391
BstMBI GATC 6 cut(s) 16, 69, 93, 112, 374, 388
BstMCI CGRYCG 1 cut(s) 377
BstNSI RCATGY 1 cut(s) 419
BstSNI TACGTA 1 cut(s) 213
BstUI CGCG 1 cut(s) 256
BstV2I GAAGAC 1 cut(s) 2
BstX2I RGATCY 2 cut(s) 16, 112
BstYI RGATCY 2 cut(s) 16, 112
Bsu36I CCTNAGG 1 cut(s) 164
BtgI CCRYGG 1 cut(s) 254
BtsCI GGATG 3 cut(s) 346, 430, 445
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 58, 225
Cfr13I GGNCC 2 cut(s) 160, 172
Cfr42I CCGCGG 1 cut(s) 257
Csp6I GTAC 1 cut(s) 328
CviAII CATG 2 cut(s) 416, 421
CviJI RGCY 5 cut(s) 32, 119, 149, 169, 355
CviKI_1 RGCY 5 cut(s) 32, 119, 149, 169, 355
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 2 cut(s) 164, 392
DpnI GATC 6 cut(s) 18, 71, 95, 114, 376, 390
DpnII GATC 6 cut(s) 16, 69, 93, 112, 374, 388
EciI GGCGGA 1 cut(s) 235
Eco105I TACGTA 1 cut(s) 213
Eco32I GATATC 1 cut(s) 312
Eco47I GGWCC 2 cut(s) 160, 172
Eco81I CCTNAGG 1 cut(s) 164
Eco88I CYCGRG 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 160
EcoRV GATATC 1 cut(s) 312
FaeI CATG 2 cut(s) 419, 424
FaiI YATR 6 cut(s) 216, 303, 332, 417, 422, 468
FaqI GGGAC 1 cut(s) 173
FatI CATG 2 cut(s) 415, 420
FauI CCCGC 1 cut(s) 150
Fnu4HI GCNGC 1 cut(s) 254
FokI GGATG 3 cut(s) 353, 437, 452
Fsp4HI GCNGC 1 cut(s) 254
FspBI CTAG 2 cut(s) 116, 228
GluI GCNGC 1 cut(s) 254
GsaI CCCAGC 1 cut(s) 239
HapII CCGG 1 cut(s) 107
Hin1II CATG 2 cut(s) 419, 424
HindIII AAGCTT 1 cut(s) 147
HinfI GANTC 3 cut(s) 266, 305, 406
HpaII CCGG 1 cut(s) 107
HphI GGTGA 1 cut(s) 485
Hpy188I TCNGA 6 cut(s) 74, 142, 271, 379, 393, 435
Hpy188III TCNNGA 2 cut(s) 14, 228
HpyAV CCTTC 4 cut(s) 283, 331, 345, 394
HpyCH4III ACNGT 3 cut(s) 53, 127, 277
HpyCH4IV ACGT 2 cut(s) 7, 212
HpyCH4V TGCA 2 cut(s) 218, 415
HpyF3I CTNAG 2 cut(s) 164, 392
HpySE526I ACGT 2 cut(s) 7, 212
Hsp92II CATG 2 cut(s) 419, 424
KspI CCGCGG 1 cut(s) 257
Kzo9I GATC 6 cut(s) 16, 69, 93, 112, 374, 388
LpnPI CCDG 7 cut(s) 27, 120, 155, 176, 221, 341, 464
LweI GCATC 1 cut(s) 430
MaeI CTAG 2 cut(s) 116, 228
MaeII ACGT 2 cut(s) 7, 212
MaeIII GTNAC 1 cut(s) 63
MalI GATC 6 cut(s) 18, 71, 95, 114, 376, 390
MboI GATC 6 cut(s) 16, 69, 93, 112, 374, 388
MboII GAAGA 3 cut(s) 122, 211, 356
MflI RGATCY 2 cut(s) 16, 112
MlyI GAGTC 1 cut(s) 415
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 3 cut(s) 159, 387, 390
MroXI GAANNNNTTC 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 256
MspI CCGG 1 cut(s) 107
MvnI CGCG 1 cut(s) 256
NdeII GATC 6 cut(s) 16, 69, 93, 112, 374, 388
NlaIII CATG 2 cut(s) 419, 424
NlaIV GGNNCC 2 cut(s) 161, 174
NmeAIII GCCGAG 1 cut(s) 469
NspI RCATGY 1 cut(s) 419
PcsI WCGNNNNNNNCGW 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 149
PfeI GAWTC 2 cut(s) 266, 305
PkrI GCNGC 1 cut(s) 255
Ple19I CGATCG 1 cut(s) 377
PleI GAGTC 1 cut(s) 414
PpsI GAGTC 1 cut(s) 414
Ppu21I YACGTR 1 cut(s) 213
PpuMI RGGWCCY 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 160
PspFI CCCAGC 1 cut(s) 235
PspN4I GGNNCC 2 cut(s) 161, 174
PspPI GGNCC 2 cut(s) 160, 172
PspPPI RGGWCCY 1 cut(s) 160
PsuI RGATCY 2 cut(s) 16, 112
PvuI CGATCG 1 cut(s) 377
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
SacII CCGCGG 1 cut(s) 257
SatI GCNGC 1 cut(s) 254
Sau3AI GATC 6 cut(s) 16, 69, 93, 112, 374, 388
Sau96I GGNCC 2 cut(s) 160, 172
SchI GAGTC 1 cut(s) 415
SetI ASST 5 cut(s) 10, 121, 151, 165, 215
SfaNI GCATC 1 cut(s) 430
Sfr303I CCGCGG 1 cut(s) 257
SgrBI CCGCGG 1 cut(s) 257
SinI GGWCC 2 cut(s) 160, 172
SnaBI TACGTA 1 cut(s) 213
SsiI CCGC 4 cut(s) 157, 246, 254, 256
SspMI CTAG 2 cut(s) 116, 228
TaaI ACNGT 3 cut(s) 53, 127, 277
TaiI ACGT 2 cut(s) 10, 215
TaqI TCGA 3 cut(s) 96, 308, 373
TatI WGTACW 1 cut(s) 327
TauI GCSGC 1 cut(s) 256
TfiI GAWTC 2 cut(s) 266, 305
TscAI CASTG 2 cut(s) 58, 225
TspDTI ATGAA 2 cut(s) 218, 357
TspRI CASTG 2 cut(s) 58, 225
VpaK11BI GGWCC 2 cut(s) 160, 172
XbaI TCTAGA 1 cut(s) 227
XceI RCATGY 1 cut(s) 419
XmnI GAANNNNTTC 1 cut(s) 149
XspI CTAG 2 cut(s) 116, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.