Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005494

Physical Location & Seq

Genomic Coordinates Reverse (-)

71006805 .. 71007290

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG509000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCTACATCTTCCAGATCCAACCACAACAGCCACCACTCATCATTCCCACAGTGATAACAAGTTACTGATCAGAAAGTTTGGGGAGATGATGATCGAAATGTTGCCGGAAGATCTAGCTTTCATGGTCTTTATCCCATCGGAGAAAGCTTTCAAGCGGGACCTAAGGCTGGACCCGACTGATAGTTTTGTTGAGGAGAAGATGAATGATACGTATGCAATGGTTTCTAGAGTGTTGGGCTTCTCAGCCGTGCCGCGGAGTATTGGTTCCGAAACAGTGGCGTTTGGGAAGGAGATTTTGTATGGTTCAATATCGGAGTTTGTGCTGTACATAACGAAGGATAAAGATGGAAGGCTAGTTGTCAATGGGGTTCGATCAGAGAGAGTTGATCTGAGAAGGAAGGGGAGTCTTGTGCATGTTATGGATGGGGTTCTGATGGATGCCGAGTTCCAACAATCGGTTCAGTATGATGGTGAAGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

161

Amino Acids

18.26

Weight (kDa)

5.12

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55820
malus_domestica	MD07G1214900.v1.1
prunus_persica	Prupe.2G246900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0369501 RchiOBHm_Chr3g0468601
rosa_laevigata	RLG00000001004 RLG00000009285 RLG00000034361
rosa_multiflora	Rmu_co8213256.1_g000001 Rmu_sc0001141.1_g000022 Rmu_sc0017355.1_g000002 Rmu_sc0031857.1_g000001 Rmu_ssc0000484.1_g000025
rosa_roxburghii	Rroxscaffold_4G00287580
rosa_rugosa	Rorug01G0351000
rosa_samantha	Rh1AG359000 Rh1BG322700 Rh1DG353500 Rh2AG179500 Rh2DG185300 Rh3BG166800 Rh4BG074800 Rh4BG080200 Rh5BG484400 Rh5CG509000 Rh7BG195500
rosa_wichuraiana	Rw1G031630 Rw5G043290 Rw6G011390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	256
AciI	CCGC	3 cut(s)	157, 254, 256
AclWI	GGATC	1 cut(s)	11
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	3 cut(s)	169, 255, 457
AgsI	TTSAA	2 cut(s)	154, 309
AjuI	GAANNNNNNNTTGG	2 cut(s)	444, 476
AloI	GAACNNNNNNTCC	4 cut(s)	250, 282, 431, 463
AluBI	AGCT	2 cut(s)	119, 149
AluI	AGCT	2 cut(s)	119, 149
AlwI	GGATC	1 cut(s)	11
Asp700I	GAANNNNTTC	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	160, 172
AsuHPI	GGTGA	1 cut(s)	485
AvaII	GGWCC	2 cut(s)	160, 172
AxyI	CCTNAGG	1 cut(s)	164
BccI	CCATC	5 cut(s)	145, 341, 419, 430, 464
BceAI	ACGGC	1 cut(s)	233
BclI	TGATCA	1 cut(s)	69
BfaI	CTAG	3 cut(s)	116, 228, 356
BglII	AGATCT	1 cut(s)	112
BisI	GCNGC	1 cut(s)	254
BlsI	GCNGC	1 cut(s)	255
Bme18I	GGWCC	2 cut(s)	160, 172
BmgT120I	GGNCC	2 cut(s)	160, 172
BmiI	GGNNCC	3 cut(s)	161, 174, 268
BmsI	GCATC	1 cut(s)	430
BsaAI	YACGTR	1 cut(s)	213
BsaBI	GATNNNNATC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	254
BsaXI	ACNNNNNCTCC	4 cut(s)	250, 280, 284, 314
Bsc4I	CCNNNNNNNGG	3 cut(s)	169, 255, 457
Bse21I	CCTNAGG	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	225
Bse8I	GATNNNNATC	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	254
BseGI	GGATG	2 cut(s)	430, 445
BseJI	GATNNNNATC	1 cut(s)	92
BseLI	CCNNNNNNNGG	3 cut(s)	169, 255, 457
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	2 cut(s)	258, 383
BseRI	GAGGAG	1 cut(s)	209
Bsh1236I	CGCG	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	107
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	3 cut(s)	169, 255, 457
BsmFI	GGGAC	1 cut(s)	173
Bsp1407I	TGTACA	1 cut(s)	327
Bsp143I	GATC	6 cut(s)	16, 69, 93, 112, 374, 388
BspACI	CCGC	3 cut(s)	157, 254, 256
BspCNI	CTCAG	2 cut(s)	257, 384
BspFNI	CGCG	1 cut(s)	256
BspLI	GGNNCC	3 cut(s)	161, 174, 268
BspPI	GGATC	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	225
BsrGI	TGTACA	1 cut(s)	327
BssECI	CCNNGG	1 cut(s)	254
BssMI	GATC	6 cut(s)	16, 69, 93, 112, 374, 388
Bst4CI	ACNGT	2 cut(s)	53, 277
BstAUI	TGTACA	1 cut(s)	327
BstBAI	YACGTR	1 cut(s)	213
BstDEI	CTNAG	3 cut(s)	164, 244, 392
BstDSI	CCRYGG	1 cut(s)	254
BstF5I	GGATG	2 cut(s)	430, 445
BstFNI	CGCG	1 cut(s)	256
BstKTI	GATC	6 cut(s)	19, 72, 96, 115, 377, 391
BstMBI	GATC	6 cut(s)	16, 69, 93, 112, 374, 388
BstNSI	RCATGY	1 cut(s)	419
BstSNI	TACGTA	1 cut(s)	213
BstUI	CGCG	1 cut(s)	256
BstX2I	RGATCY	2 cut(s)	16, 112
BstYI	RGATCY	2 cut(s)	16, 112
Bsu36I	CCTNAGG	1 cut(s)	164
BtgI	CCRYGG	1 cut(s)	254
BtsCI	GGATG	2 cut(s)	430, 445
BtsIMutI	CAGTG	2 cut(s)	58, 282
Cfr13I	GGNCC	2 cut(s)	160, 172
Cfr42I	CCGCGG	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	2 cut(s)	124, 416
CviJI	RGCY	7 cut(s)	32, 119, 149, 169, 240, 248, 355
CviKI_1	RGCY	7 cut(s)	32, 119, 149, 169, 240, 248, 355
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	3 cut(s)	164, 244, 392
DpnI	GATC	6 cut(s)	18, 71, 95, 114, 376, 390
DpnII	GATC	6 cut(s)	16, 69, 93, 112, 374, 388
Eco105I	TACGTA	1 cut(s)	213
Eco47I	GGWCC	2 cut(s)	160, 172
Eco81I	CCTNAGG	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	160
FaeI	CATG	2 cut(s)	127, 419
FaiI	YATR	7 cut(s)	125, 216, 303, 332, 417, 422, 468
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	2 cut(s)	123, 415
FauI	CCCGC	1 cut(s)	150
FbaI	TGATCA	1 cut(s)	69
Fnu4HI	GCNGC	1 cut(s)	254
FokI	GGATG	2 cut(s)	437, 452
Fsp4HI	GCNGC	1 cut(s)	254
FspBI	CTAG	3 cut(s)	116, 228, 356
GluI	GCNGC	1 cut(s)	254
HapII	CCGG	1 cut(s)	107
Hin1II	CATG	2 cut(s)	127, 419
HindIII	AAGCTT	1 cut(s)	147
HinfI	GANTC	1 cut(s)	406
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	1 cut(s)	485
Hpy188I	TCNGA	7 cut(s)	74, 142, 271, 316, 379, 393, 435
Hpy188III	TCNNGA	2 cut(s)	14, 228
HpyAV	CCTTC	5 cut(s)	283, 331, 345, 390, 394
HpyCH4III	ACNGT	2 cut(s)	53, 277
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	2 cut(s)	218, 415
HpyF3I	CTNAG	3 cut(s)	164, 244, 392
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	2 cut(s)	127, 419
Ksp22I	TGATCA	1 cut(s)	69
KspI	CCGCGG	1 cut(s)	257
Kzo9I	GATC	6 cut(s)	16, 69, 93, 112, 374, 388
LpnPI	CCDG	3 cut(s)	27, 120, 155
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	3 cut(s)	116, 228, 356
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	63
MalI	GATC	6 cut(s)	18, 71, 95, 114, 376, 390
MboI	GATC	6 cut(s)	16, 69, 93, 112, 374, 388
MboII	GAAGA	2 cut(s)	122, 211
MflI	RGATCY	2 cut(s)	16, 112
MlyI	GAGTC	1 cut(s)	415
MmeI	TCCRAC	2 cut(s)	44, 475
MnlI	CCTC	1 cut(s)	187
MroXI	GAANNNNTTC	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	256
MspI	CCGG	1 cut(s)	107
MvnI	CGCG	1 cut(s)	256
NdeII	GATC	6 cut(s)	16, 69, 93, 112, 374, 388
NlaIII	CATG	2 cut(s)	127, 419
NlaIV	GGNNCC	3 cut(s)	161, 174, 268
NmeAIII	GCCGAG	1 cut(s)	469
NspI	RCATGY	1 cut(s)	419
PdmI	GAANNNNTTC	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	255
PleI	GAGTC	1 cut(s)	414
PpsI	GAGTC	1 cut(s)	414
Ppu21I	YACGTR	1 cut(s)	213
PpuMI	RGGWCCY	1 cut(s)	160
Psp5II	RGGWCCY	1 cut(s)	160
PspN4I	GGNNCC	3 cut(s)	161, 174, 268
PspPI	GGNCC	2 cut(s)	160, 172
PspPPI	RGGWCCY	1 cut(s)	160
PsuI	RGATCY	2 cut(s)	16, 112
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SacII	CCGCGG	1 cut(s)	257
SatI	GCNGC	1 cut(s)	254
Sau3AI	GATC	6 cut(s)	16, 69, 93, 112, 374, 388
Sau96I	GGNCC	2 cut(s)	160, 172
SchI	GAGTC	1 cut(s)	415
SetI	ASST	4 cut(s)	121, 151, 165, 215
SfaNI	GCATC	1 cut(s)	430
Sfr303I	CCGCGG	1 cut(s)	257
SgrBI	CCGCGG	1 cut(s)	257
SinI	GGWCC	2 cut(s)	160, 172
SnaBI	TACGTA	1 cut(s)	213
SsiI	CCGC	3 cut(s)	157, 254, 256
SspMI	CTAG	3 cut(s)	116, 228, 356
TaaI	ACNGT	2 cut(s)	53, 277
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	2 cut(s)	96, 373
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	1 cut(s)	256
TscAI	CASTG	2 cut(s)	58, 282
TspDTI	ATGAA	2 cut(s)	112, 218
TspRI	CASTG	2 cut(s)	58, 282
VpaK11BI	GGWCC	2 cut(s)	160, 172
XbaI	TCTAGA	1 cut(s)	227
XceI	RCATGY	1 cut(s)	419
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	3 cut(s)	116, 228, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.