Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8213256.1

Orthogroup ID

OG0005494

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 729

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8213256.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 517 bp

aactagcgatcctgggatcatcgtcaccaccgccggagctagacttcccaatcgaatggccccccgacgggaagctcagccatgactgggtccagaaccttatgtccgtcttcatcacgttcgcattgggggtggtattggtttgtagctttgtaatactcgcactcacaatactacgtcttccagatccaaccacaacagccaccactcatcattcccatagtgataacaagttactgatccgaaagtttagggagatgatgatcgaaatgttgccggaagatctagctttcacggtctttatcccatcagagaaagctttcaagcgggacctgaggctggacccgagtgatagttttgttggggagaagatgaatgatacgtatgcagtggtttctagagtgttgggcttctctgccgtgccccggagtattggttcggaaatagtggcgtttgggaaggagatttcgtatgattcgaatggctctcatcatcggcgccggcggccatggcgttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

171

Amino Acids

19.29

Weight (kDa)

6.65

Isoelectric Point (pI)

62.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55820
malus_domestica	MD07G1214900.v1.1
prunus_persica	Prupe.2G246900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0369501 RchiOBHm_Chr3g0468601
rosa_laevigata	RLG00000001004 RLG00000009285 RLG00000034361
rosa_multiflora	Rmu_co8213256.1_g000001 Rmu_sc0001141.1_g000022 Rmu_sc0017355.1_g000002 Rmu_sc0031857.1_g000001 Rmu_ssc0000484.1_g000025
rosa_roxburghii	Rroxscaffold_4G00287580
rosa_rugosa	Rorug01G0351000
rosa_samantha	Rh1AG359000 Rh1BG322700 Rh1DG353500 Rh2AG179500 Rh2DG185300 Rh3BG166800 Rh4BG074800 Rh4BG080200 Rh5BG484400 Rh5CG509000 Rh7BG195500
rosa_wichuraiana	Rw1G031630 Rw5G043290 Rw6G011390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	497
AciI	CCGC	3 cut(s)	31, 327, 504
AclWI	GGATC	4 cut(s)	3, 24, 181, 234
AcoI	YGGCCR	1 cut(s)	505
AcyI	GRCGYC	1 cut(s)	498
AfiI	CCNNNNNNNGG	5 cut(s)	67, 68, 87, 339, 425
AgsI	TTSAA	1 cut(s)	324
AjnI	CCWGG	1 cut(s)	11
AloI	GAACNNNNNNTCC	4 cut(s)	88, 120, 420, 452
AluBI	AGCT	5 cut(s)	39, 75, 149, 289, 319
AluI	AGCT	5 cut(s)	39, 75, 149, 289, 319
AlwI	GGATC	4 cut(s)	3, 24, 181, 234
Ama87I	CYCGRG	1 cut(s)	345
AoxI	GGCC	2 cut(s)	58, 505
Asp700I	GAANNNNTTC	1 cut(s)	319
AspLEI	GCGC	1 cut(s)	500
AspS9I	GGNCC	4 cut(s)	59, 90, 330, 342
AsuC2I	CCSGG	1 cut(s)	426
AsuHPI	GGTGA	1 cut(s)	17
AsuII	TTCGAA	1 cut(s)	478
AvaI	CYCGRG	1 cut(s)	345
AvaII	GGWCC	3 cut(s)	90, 330, 342
AxyI	CCTNAGG	1 cut(s)	334
BaeGI	GKGCMC	1 cut(s)	425
BanI	GGYRCC	1 cut(s)	497
BbsI	GAAGAC	2 cut(s)	102, 172
BccI	CCATC	1 cut(s)	315
BceAI	ACGGC	1 cut(s)	403
BciT130I	CCWGG	1 cut(s)	13
BcnI	CCSGG	1 cut(s)	426
BfaI	CTAG	4 cut(s)	4, 40, 286, 398
BfoI	RGCGCY	1 cut(s)	501
BglII	AGATCT	1 cut(s)	282
BisI	GCNGC	1 cut(s)	505
BlpI	GCTNAGC	1 cut(s)	76
BlsI	GCNGC	1 cut(s)	506
Bme1390I	CCNGG	2 cut(s)	13, 426
Bme18I	GGWCC	3 cut(s)	90, 330, 342
BmeT110I	CYCGRG	1 cut(s)	345
BmgT120I	GGNCC	4 cut(s)	59, 90, 330, 342
BmiI	GGNNCC	5 cut(s)	61, 91, 331, 344, 499
BmrFI	CCNGG	2 cut(s)	13, 426
BmrI	ACTGGG	1 cut(s)	96
BmuI	ACTGGG	1 cut(s)	96
BpiI	GAAGAC	2 cut(s)	102, 172
Bpu1102I	GCTNAGC	1 cut(s)	76
Bpu14I	TTCGAA	1 cut(s)	478
BpuMI	CCSGG	1 cut(s)	426
BsaAI	YACGTR	1 cut(s)	383
BsaBI	GATNNNNATC	1 cut(s)	262
BsaHI	GRCGYC	1 cut(s)	498
BsaJI	CCNNGG	3 cut(s)	12, 424, 508
BsaXI	ACNNNNNCTCC	4 cut(s)	420, 450, 454, 484
Bsc4I	CCNNNNNNNGG	5 cut(s)	67, 68, 87, 339, 425
Bse118I	RCCGGY	1 cut(s)	500
Bse1I	ACTGG	1 cut(s)	91
Bse21I	CCTNAGG	1 cut(s)	334
Bse8I	GATNNNNATC	1 cut(s)	262
BseBI	CCWGG	1 cut(s)	13
BseDI	CCNNGG	3 cut(s)	12, 424, 508
BseJI	GATNNNNATC	1 cut(s)	262
BseLI	CCNNNNNNNGG	5 cut(s)	67, 68, 87, 339, 425
BseMII	CTCAG	2 cut(s)	90, 325
BseNI	ACTGG	1 cut(s)	91
BseSI	GKGCMC	1 cut(s)	425
BshFI	GGCC	2 cut(s)	60, 507
BshNI	GGYRCC	1 cut(s)	497
BsiHKCI	CYCGRG	1 cut(s)	345
BsiSI	CCGG	4 cut(s)	34, 277, 426, 501
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	5 cut(s)	67, 68, 87, 339, 425
BsmFI	GGGAC	1 cut(s)	343
BsnI	GGCC	2 cut(s)	60, 507
BsoBI	CYCGRG	1 cut(s)	345
Bsp119I	TTCGAA	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	425
Bsp143I	GATC	6 cut(s)	8, 16, 186, 239, 263, 282
Bsp1720I	GCTNAGC	1 cut(s)	76
Bsp19I	CCATGG	1 cut(s)	508
BspACI	CCGC	3 cut(s)	31, 327, 504
BspANI	GGCC	2 cut(s)	60, 507
BspCNI	CTCAG	2 cut(s)	89, 326
BspLI	GGNNCC	5 cut(s)	61, 91, 331, 344, 499
BspPI	GGATC	4 cut(s)	3, 24, 181, 234
BspT104I	TTCGAA	1 cut(s)	478
BspT107I	GGYRCC	1 cut(s)	497
BsrFI	RCCGGY	1 cut(s)	500
BsrI	ACTGG	1 cut(s)	91
BssAI	RCCGGY	1 cut(s)	500
BssECI	CCNNGG	3 cut(s)	12, 424, 508
BssMI	GATC	6 cut(s)	8, 16, 186, 239, 263, 282
BssNI	GRCGYC	1 cut(s)	498
BssT1I	CCWWGG	1 cut(s)	508
Bst2UI	CCWGG	1 cut(s)	13
Bst4CI	ACNGT	1 cut(s)	297
BstACI	GRCGYC	1 cut(s)	498
BstBAI	YACGTR	1 cut(s)	383
BstBI	TTCGAA	1 cut(s)	478
BstC8I	GCNNGC	1 cut(s)	502
BstDEI	CTNAG	2 cut(s)	76, 334
BstDSI	CCRYGG	1 cut(s)	508
BstH2I	RGCGCY	1 cut(s)	501
BstHHI	GCGC	1 cut(s)	500
BstKTI	GATC	6 cut(s)	11, 19, 189, 242, 266, 285
BstMBI	GATC	6 cut(s)	8, 16, 186, 239, 263, 282
BstMWI	GCNNNNNNNGC	2 cut(s)	504, 510
BstNI	CCWGG	1 cut(s)	13
BstSCI	CCNGG	2 cut(s)	11, 424
BstSLI	GKGCMC	1 cut(s)	425
BstSNI	TACGTA	1 cut(s)	383
BstV2I	GAAGAC	2 cut(s)	102, 172
BstX2I	RGATCY	2 cut(s)	186, 282
BstXI	CCANNNNNNTGG	1 cut(s)	56
BstYI	RGATCY	2 cut(s)	186, 282
Bsu36I	CCTNAGG	1 cut(s)	334
BsuRI	GGCC	2 cut(s)	60, 507
BtgI	CCRYGG	1 cut(s)	508
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	1 cut(s)	395
Cac8I	GCNNGC	1 cut(s)	502
CfoI	GCGC	1 cut(s)	500
Cfr10I	RCCGGY	1 cut(s)	500
Cfr13I	GGNCC	4 cut(s)	59, 90, 330, 342
CviAII	CATG	2 cut(s)	82, 509
DdeI	CTNAG	2 cut(s)	76, 334
DinI	GGCGCC	1 cut(s)	499
DpnI	GATC	6 cut(s)	10, 18, 188, 241, 265, 284
DpnII	GATC	6 cut(s)	8, 16, 186, 239, 263, 282
EaeI	YGGCCR	1 cut(s)	505
Eco105I	TACGTA	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	508
Eco47I	GGWCC	3 cut(s)	90, 330, 342
Eco81I	CCTNAGG	1 cut(s)	334
Eco88I	CYCGRG	1 cut(s)	345
EcoO109I	RGGNCCY	1 cut(s)	330
EcoRII	CCWGG	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	508
EgeI	GGCGCC	1 cut(s)	499
EheI	GGCGCC	1 cut(s)	499
ErhI	CCWWGG	1 cut(s)	508
FaeI	CATG	2 cut(s)	85, 512
FaiI	YATR	6 cut(s)	83, 103, 221, 386, 473, 510
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	2 cut(s)	81, 508
FauI	CCCGC	1 cut(s)	320
Fnu4HI	GCNGC	1 cut(s)	505
Fsp4HI	GCNGC	1 cut(s)	505
FspBI	CTAG	4 cut(s)	4, 40, 286, 398
GlaI	GCGC	1 cut(s)	499
GluI	GCNGC	1 cut(s)	505
HaeII	RGCGCY	1 cut(s)	501
HaeIII	GGCC	2 cut(s)	60, 507
HapII	CCGG	4 cut(s)	34, 277, 426, 501
HhaI	GCGC	1 cut(s)	500
Hin1I	GRCGYC	1 cut(s)	498
Hin1II	CATG	2 cut(s)	85, 512
Hin6I	GCGC	1 cut(s)	498
HinP1I	GCGC	1 cut(s)	498
HindIII	AAGCTT	1 cut(s)	317
HinfI	GANTC	1 cut(s)	475
HpaII	CCGG	4 cut(s)	34, 277, 426, 501
HphI	GGTGA	1 cut(s)	17
Hpy188I	TCNGA	3 cut(s)	244, 312, 441
Hpy188III	TCNNGA	3 cut(s)	93, 184, 398
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	453
HpyCH4III	ACNGT	1 cut(s)	297
HpyCH4IV	ACGT	3 cut(s)	118, 177, 382
HpyCH4V	TGCA	1 cut(s)	388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	504, 510
HpyF3I	CTNAG	2 cut(s)	76, 334
HpySE526I	ACGT	3 cut(s)	118, 177, 382
Hsp92I	GRCGYC	1 cut(s)	498
Hsp92II	CATG	2 cut(s)	85, 512
HspAI	GCGC	1 cut(s)	498
KasI	GGCGCC	1 cut(s)	497
KroI	GCCGGC	1 cut(s)	500
KroNI	GCCGGC	1 cut(s)	502
Kzo9I	GATC	6 cut(s)	8, 16, 186, 239, 263, 282
LmnI	GCTCC	1 cut(s)	36
LpnPI	CCDG	9 cut(s)	25, 47, 72, 106, 197, 290, 325, 346, 439
MaeI	CTAG	4 cut(s)	4, 40, 286, 398
MaeII	ACGT	3 cut(s)	118, 177, 382
MaeIII	GTNAC	2 cut(s)	23, 233
MalI	GATC	6 cut(s)	10, 18, 188, 241, 265, 284
MboI	GATC	6 cut(s)	8, 16, 186, 239, 263, 282
MboII	GAAGA	4 cut(s)	102, 172, 292, 381
MflI	RGATCY	2 cut(s)	186, 282
MhlI	GDGCHC	1 cut(s)	425
Mly113I	GGCGCC	1 cut(s)	498
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	1 cut(s)	329
MreI	CGCCGGCG	1 cut(s)	500
MroNI	GCCGGC	1 cut(s)	500
MroXI	GAANNNNTTC	1 cut(s)	319
MspI	CCGG	4 cut(s)	34, 277, 426, 501
MspR9I	CCNGG	2 cut(s)	13, 426
MvaI	CCWGG	1 cut(s)	13
MwoI	GCNNNNNNNGC	2 cut(s)	504, 510
NaeI	GCCGGC	1 cut(s)	502
NarI	GGCGCC	1 cut(s)	498
NciI	CCSGG	1 cut(s)	426
NcoI	CCATGG	1 cut(s)	508
NdeII	GATC	6 cut(s)	8, 16, 186, 239, 263, 282
NgoMIV	GCCGGC	1 cut(s)	500
NlaIII	CATG	2 cut(s)	85, 512
NlaIV	GGNNCC	5 cut(s)	61, 91, 331, 344, 499
NmuCI	GTSAC	1 cut(s)	23
NspV	TTCGAA	1 cut(s)	478
PcsI	WCGNNNNNNNCGW	1 cut(s)	475
PdiI	GCCGGC	1 cut(s)	502
PdmI	GAANNNNTTC	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	475
PflFI	GACNNNGTC	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	506
PluTI	GGCGCC	1 cut(s)	501
Ppu21I	YACGTR	1 cut(s)	383
PpuMI	RGGWCCY	1 cut(s)	330
Psp5II	RGGWCCY	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	11
PspN4I	GGNNCC	5 cut(s)	61, 91, 331, 344, 499
PspPI	GGNCC	4 cut(s)	59, 90, 330, 342
PspPPI	RGGWCCY	1 cut(s)	330
PsuI	RGATCY	2 cut(s)	186, 282
PsyI	GACNNNGTC	1 cut(s)	88
SatI	GCNGC	1 cut(s)	505
Sau3AI	GATC	6 cut(s)	8, 16, 186, 239, 263, 282
Sau96I	GGNCC	4 cut(s)	59, 90, 330, 342
ScrFI	CCNGG	2 cut(s)	13, 426
SduI	GDGCHC	1 cut(s)	425
SfoI	GGCGCC	1 cut(s)	499
SfuI	TTCGAA	1 cut(s)	478
SgrAI	CRCCGGYG	1 cut(s)	500
SinI	GGWCC	3 cut(s)	90, 330, 342
SnaBI	TACGTA	1 cut(s)	383
SsiI	CCGC	3 cut(s)	31, 327, 504
SspDI	GGCGCC	1 cut(s)	497
SspMI	CTAG	4 cut(s)	4, 40, 286, 398
StyD4I	CCNGG	2 cut(s)	11, 424
StyI	CCWWGG	1 cut(s)	508
TaaI	ACNGT	1 cut(s)	297
TaiI	ACGT	3 cut(s)	121, 180, 385
TaqI	TCGA	3 cut(s)	53, 266, 478
TauI	GCSGC	1 cut(s)	507
TfiI	GAWTC	1 cut(s)	475
TscAI	CASTG	1 cut(s)	395
TseFI	GTSAC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	2 cut(s)	102, 388
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	1 cut(s)	395
Tth111I	GACNNNGTC	1 cut(s)	88
VpaK11BI	GGWCC	3 cut(s)	90, 330, 342
XbaI	TCTAGA	1 cut(s)	397
XmnI	GAANNNNTTC	1 cut(s)	319
XspI	CTAG	4 cut(s)	4, 40, 286, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.