RLG00000001004

Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0005494
Physical Location & Seq
Forward (+)
9116389 .. 9116961
573 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001004

Sequence Viewer

Length: 573 bp
ATGAGCAGAAGCCGGGTTTTGAGGAATCCAATCGCATTCGTGTTAGGGGTGGTATTGATTTGCAGCTTTGTAATACTCGCGCTCACAATGCTACGTCTTCCAGATCCAACCACAACAGCCACCACTCATCATTCCCACAGTGATAACAAGTTACTGATCGGAAAGTTTGGGGAGATGATGATCGAAATGTTGCCGGAAGATCTAGCTTTCACGGTCTTTATCCCATCGGAGAAAGCTTTCAAGCGGGACCTGAGGCTGGACTCGACTGATAGTTTTGTTGGGGAGAAGATGAATGATACGTATGCAGTGGTTTCTAAAGTGTTGGGCTTCTCAGCCGTGCCGCAGAGTATTGGTTCCGAAACGGTGGCGTTTGGGAAGGAGATTTCATATGGTTCGATATTGGGGTTTGTGGTGTACATAACGAAGGATGAAGATGGAAGGCTGGTTGTCAATGGGGTTCGATGGGAGAGAGTTGATCTGAGGAGGAAGGGGAGTCTTGTGCACGTTATGGATGAGGTTCTGATGGATGTTGAGTTCCAACAATTGGTTCAGTATGATGGTGAAGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

191

Amino Acids

21.29

Weight (kDa)

5.13

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 63 - 175 1.9e-07 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 544
AccII CGCG 1 cut(s) 80
AciI CCGC 2 cut(s) 244, 341
AclWI GGATC 1 cut(s) 98
AfaI GTAC 1 cut(s) 416
AfiI CCNNNNNNNGG 2 cut(s) 256, 544
AgsI TTSAA 1 cut(s) 241
AjuI GAANNNNNNNTTGG 2 cut(s) 531, 563
AloI GAACNNNNNNTCC 2 cut(s) 518, 550
AluBI AGCT 3 cut(s) 66, 206, 236
AluI AGCT 3 cut(s) 66, 206, 236
Alw21I GWGCWC 1 cut(s) 504
Alw44I GTGCAC 1 cut(s) 500
AlwI GGATC 1 cut(s) 98
ApaLI GTGCAC 1 cut(s) 500
ApeKI GCWGC 1 cut(s) 63
Asp700I GAANNNNTTC 1 cut(s) 236
AspLEI GCGC 1 cut(s) 82
AspS9I GGNCC 1 cut(s) 247
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 572
AvaII GGWCC 1 cut(s) 247
AxyI CCTNAGG 1 cut(s) 251
BaeGI GKGCMC 1 cut(s) 504
BbsI GAAGAC 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 504
BbvI GCAGC 1 cut(s) 75
BccI CCATC 5 cut(s) 232, 428, 456, 517, 551
BceAI ACGGC 1 cut(s) 320
BcnI CCSGG 1 cut(s) 14
BfaI CTAG 1 cut(s) 203
BglII AGATCT 1 cut(s) 199
BisI GCNGC 2 cut(s) 64, 341
BlsI GCNGC 2 cut(s) 65, 342
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 2 cut(s) 248, 355
BmrFI CCNGG 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 14
BsaAI YACGTR 1 cut(s) 300
BsaBI GATNNNNATC 1 cut(s) 179
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 544
Bse21I CCTNAGG 1 cut(s) 251
Bse8I GATNNNNATC 1 cut(s) 179
BseGI GGATG 3 cut(s) 433, 517, 532
BseJI GATNNNNATC 1 cut(s) 179
BseLI CCNNNNNNNGG 2 cut(s) 256, 544
BseMII CTCAG 3 cut(s) 242, 345, 470
BseRI GAGGAG 1 cut(s) 496
BseSI GKGCMC 1 cut(s) 504
BseXI GCAGC 1 cut(s) 75
Bsh1236I CGCG 1 cut(s) 80
BsiHKAI GWGCWC 1 cut(s) 504
BsiSI CCGG 2 cut(s) 13, 194
BslFI GGGAC 1 cut(s) 260
BslI CCNNNNNNNGG 2 cut(s) 256, 544
BsmFI GGGAC 1 cut(s) 260
BsmI GAATGC 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 504
Bsp1407I TGTACA 1 cut(s) 414
Bsp143I GATC 5 cut(s) 103, 156, 180, 199, 475
BspACI CCGC 2 cut(s) 244, 341
BspCNI CTCAG 3 cut(s) 243, 344, 471
BspFNI CGCG 1 cut(s) 80
BspLI GGNNCC 2 cut(s) 248, 355
BspPI GGATC 1 cut(s) 98
BsrGI TGTACA 1 cut(s) 414
BssMI GATC 5 cut(s) 103, 156, 180, 199, 475
Bst4CI ACNGT 3 cut(s) 140, 214, 364
BstAUI TGTACA 1 cut(s) 414
BstBAI YACGTR 1 cut(s) 300
BstDEI CTNAG 3 cut(s) 251, 331, 479
BstF5I GGATG 3 cut(s) 433, 517, 532
BstFNI CGCG 1 cut(s) 80
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 5 cut(s) 106, 159, 183, 202, 478
BstMBI GATC 5 cut(s) 103, 156, 180, 199, 475
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 12
BstSLI GKGCMC 1 cut(s) 504
BstSNI TACGTA 1 cut(s) 300
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 75
BstV2I GAAGAC 1 cut(s) 89
BstX2I RGATCY 2 cut(s) 103, 199
BstYI RGATCY 2 cut(s) 103, 199
Bsu36I CCTNAGG 1 cut(s) 251
BtsCI GGATG 3 cut(s) 433, 517, 532
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 2 cut(s) 145, 312
CfoI GCGC 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 247
Csp6I GTAC 1 cut(s) 415
CviJI RGCY 9 cut(s) 12, 66, 119, 206, 236, 256, 327, 335, 442
CviKI_1 RGCY 9 cut(s) 12, 66, 119, 206, 236, 256, 327, 335, 442
CviQI GTAC 1 cut(s) 415
DdeI CTNAG 3 cut(s) 251, 331, 479
DpnI GATC 5 cut(s) 105, 158, 182, 201, 477
DpnII GATC 5 cut(s) 103, 156, 180, 199, 475
Eco105I TACGTA 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 247
Eco81I CCTNAGG 1 cut(s) 251
EcoO109I RGGNCCY 1 cut(s) 247
FaiI YATR 6 cut(s) 303, 388, 390, 419, 509, 555
FaqI GGGAC 1 cut(s) 260
FauI CCCGC 1 cut(s) 237
FauNDI CATATG 1 cut(s) 388
Fnu4HI GCNGC 2 cut(s) 64, 341
FokI GGATG 3 cut(s) 440, 524, 539
Fsp4HI GCNGC 2 cut(s) 64, 341
FspBI CTAG 1 cut(s) 203
GlaI GCGC 1 cut(s) 81
GluI GCNGC 2 cut(s) 64, 341
HapII CCGG 2 cut(s) 13, 194
HhaI GCGC 1 cut(s) 82
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HindIII AAGCTT 1 cut(s) 234
HinfI GANTC 3 cut(s) 25, 260, 493
HpaII CCGG 2 cut(s) 13, 194
HphI GGTGA 1 cut(s) 572
Hpy166II GTNNAC 2 cut(s) 415, 502
Hpy188I TCNGA 5 cut(s) 161, 229, 358, 480, 522
Hpy188III TCNNGA 1 cut(s) 101
Hpy8I GTNNAC 2 cut(s) 415, 502
HpyAV CCTTC 4 cut(s) 370, 418, 432, 481
HpyCH4III ACNGT 3 cut(s) 140, 214, 364
HpyCH4IV ACGT 3 cut(s) 94, 299, 504
HpyCH4V TGCA 3 cut(s) 63, 305, 502
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpyF3I CTNAG 3 cut(s) 251, 331, 479
HpySE526I ACGT 3 cut(s) 94, 299, 504
HspAI GCGC 1 cut(s) 80
Kzo9I GATC 5 cut(s) 103, 156, 180, 199, 475
LpnPI CCDG 6 cut(s) 26, 114, 207, 242, 263, 428
Lsp1109I GCAGC 1 cut(s) 75
MaeI CTAG 1 cut(s) 203
MaeII ACGT 3 cut(s) 94, 299, 504
MaeIII GTNAC 1 cut(s) 150
MalI GATC 5 cut(s) 105, 158, 182, 201, 477
MboI GATC 5 cut(s) 103, 156, 180, 199, 475
MboII GAAGA 4 cut(s) 89, 209, 298, 443
MfeI CAATTG 1 cut(s) 542
MflI RGATCY 2 cut(s) 103, 199
MhlI GDGCHC 1 cut(s) 504
MluCI AATT 1 cut(s) 542
MlyI GAGTC 2 cut(s) 254, 502
MmeI TCCRAC 2 cut(s) 131, 562
MnlI CCTC 5 cut(s) 15, 246, 474, 477, 508
MroXI GAANNNNTTC 1 cut(s) 236
MspI CCGG 2 cut(s) 13, 194
MspR9I CCNGG 1 cut(s) 14
MunI CAATTG 1 cut(s) 542
Mva1269I GAATGC 1 cut(s) 35
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 88
NciI CCSGG 1 cut(s) 14
NdeI CATATG 1 cut(s) 388
NdeII GATC 5 cut(s) 103, 156, 180, 199, 475
NlaIV GGNNCC 2 cut(s) 248, 355
PctI GAATGC 1 cut(s) 35
PdmI GAANNNNTTC 1 cut(s) 236
PfeI GAWTC 1 cut(s) 25
PflMI CCANNNNNTGG 1 cut(s) 544
PkrI GCNGC 2 cut(s) 65, 342
PleI GAGTC 2 cut(s) 254, 501
PpsI GAGTC 2 cut(s) 254, 501
Ppu21I YACGTR 1 cut(s) 300
PpuMI RGGWCCY 1 cut(s) 247
Psp5II RGGWCCY 1 cut(s) 247
PspN4I GGNNCC 2 cut(s) 248, 355
PspPI GGNCC 1 cut(s) 247
PspPPI RGGWCCY 1 cut(s) 247
PsuI RGATCY 2 cut(s) 103, 199
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
SatI GCNGC 2 cut(s) 64, 341
Sau3AI GATC 5 cut(s) 103, 156, 180, 199, 475
Sau96I GGNCC 1 cut(s) 247
SchI GAGTC 2 cut(s) 254, 502
ScrFI CCNGG 1 cut(s) 14
SduI GDGCHC 1 cut(s) 504
SetI ASST 8 cut(s) 68, 97, 208, 238, 252, 302, 507, 519
SinI GGWCC 1 cut(s) 247
SnaBI TACGTA 1 cut(s) 300
Sse9I AATT 1 cut(s) 542
SsiI CCGC 2 cut(s) 244, 341
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 1 cut(s) 12
TaaI ACNGT 3 cut(s) 140, 214, 364
TaiI ACGT 3 cut(s) 97, 302, 507
TaqI TCGA 4 cut(s) 183, 263, 395, 460
TasI AATT 1 cut(s) 542
TatI WGTACW 1 cut(s) 414
TauI GCSGC 1 cut(s) 343
TfiI GAWTC 1 cut(s) 25
TscAI CASTG 2 cut(s) 145, 312
TseI GCWGC 1 cut(s) 63
TspDTI ATGAA 3 cut(s) 305, 375, 444
TspRI CASTG 2 cut(s) 145, 312
Van91I CCANNNNNTGG 1 cut(s) 544
VneI GTGCAC 1 cut(s) 500
VpaK11BI GGWCC 1 cut(s) 247
XmnI GAANNNNTTC 1 cut(s) 236
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.