AT3G58530

Leucine Rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011155
Physical Location & Seq
Forward (+)
21645547 .. 21648368
2822 bp
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UTR
Exon/CDS
Intron
AT3G58530.1

Sequence Viewer

Length: 1062 bp
ATGGAAGCGAAGAAAGTGACAGAAGAGGAAGAAGAGACGTGGAGGAGAGAGATAGTAACAAGCGTTATGAGATTAGTGAGTACGAGATTGCCTCAGACAGATCTAATTTCTCTACTTCTGGTTAGCCCATGGCTTTATCGCACCCTCATCTCCTATCCTTCAATCTGGCTGACCATCAATTTGCGCGAGATGACCAATGCAGGGGATCGGCTTTTAGCTGCTCTGTCCTTGCCAAGATATCGACAAGTGAAGCATATCAATCTTGAATTTGCCCAGGGTGTTGTGGACAGTCATCTTAAACTTGTGAAAACCGAGTGCCCGGATGCTCTTTTGAGTCTAGAATGGTTGAATCTGAACGTGTGCCAAAAGATATCAGACAATGGAATCGAAGCTATAACTAGCATATGTCCAAAGTTAAAAGTTTTCTCTATCTACTGGAACGTAAGGGTGACCGATGCTGGCATTAGAAATCTAGTGAAGAATTGCAGACATATCACTGATTTGAACTTAAGTGGCTGCAAGAGCCTAACGGACAAAAGTATGCAACTAGTAGCTGAAAGTTATCCAGACTTAGAGTCACTGAATATCACTAGGTGTGTTAAGATTACAGATGATGGATTACTTCAAGTGCTACAAAAATGTTTCTCTCTCCAGACCTTAAATCTCTATGCTCTTTCAGGCTTCACAGACAAAGCCTACATGAAGATATCACTTTTAGCTGACCTAAGGTTCTTAGATATATGTGGCGCTCAGAATATATCTGACGAGGGGATTGGTCATATAGCTAAATGCAACAAGTTAGAGTCTCTCAACTTGACATGGTGTGTGCGTATCACAGATGCAGGTGTGAATACCATTGCTAATAGTTGTACCTCCCTCGAATTTCTCAGCTTGTTTGGGATAGTTGGGGTGACTGACAGATGTCTGGAGACCCTTTCGCAGACATGCTCGACTACACTCACCACTCTTGATGTCAATGGCTGCACCGGCATCAAGAGACGAAGCCGTGAAGAGTTGCTTCAGATGTTCCCTCGTTTGACATGCTTCAAAGTACACAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

353

Amino Acids

39.73

Weight (kDa)

7.43

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 73 - 222 1.3e-09 Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885 PF25372 149 - 332 4e-15 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58530
fragaria_vesca FvH4_6g21620 FvH4_6g21620
malus_domestica MD12G1053200.v1.1 MD14G1051600.v1.1
prunus_persica Prupe.7G084400_v2.0.a1
pyrus_communis pycom12g04660 pycom14g04290 pycom14g04300
rosa_chinensis RchiOBHm_Chr3g0478871
rosa_laevigata RLG00000023619
rosa_multiflora Rmu_sc0004831.1_g000004 Rmu_sc0005751.1_g000013
rosa_roxburghii Rroxscaffold_6G00403010
rosa_rugosa Rorug03G0168800
rosa_samantha Rh3AG220400 Rh3BG252300 Rh3CG249100 Rh3DG245300
rosa_wichuraiana Rw3G019820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 833
Acc36I ACCTGC 1 cut(s) 833
AccII CGCG 1 cut(s) 186
AclWI GGATC 1 cut(s) 213
AcsI RAATTY 2 cut(s) 266, 881
AcuI CTGAAG 1 cut(s) 1004
AdeI CACNNNGTG 1 cut(s) 594
AfaI GTAC 3 cut(s) 82, 871, 1053
AfiI CCNNNNNNNGG 1 cut(s) 201
AflII CTTAAG 1 cut(s) 508
AflIII ACRYGT 1 cut(s) 357
AgsI TTSAA 6 cut(s) 162, 266, 349, 505, 626, 1048
AhdI GACNNNNNGTC 1 cut(s) 574
AhlI ACTAGT 1 cut(s) 547
AjiI CACGTC 1 cut(s) 39
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 7 cut(s) 218, 392, 554, 719, 785, 891, 1059
AluI AGCT 7 cut(s) 218, 392, 554, 719, 785, 891, 1059
Alw26I GTCTC 4 cut(s) 29, 810, 923, 991
AlwI GGATC 1 cut(s) 213
ApeKI GCWGC 3 cut(s) 218, 516, 981
ApoI RAATTY 2 cut(s) 266, 881
ArsI GACNNNNNNTTYG 2 cut(s) 163, 195
AspLEI GCGC 2 cut(s) 186, 749
AsuC2I CCSGG 1 cut(s) 320
AsuHPI GGTGA 3 cut(s) 460, 922, 952
AxyI CCTNAGG 1 cut(s) 725
BaeGI GKGCMC 1 cut(s) 320
BbvI GCAGC 3 cut(s) 205, 503, 968
BccI CCATC 2 cut(s) 182, 608
BceAI ACGGC 1 cut(s) 990
BciT130I CCWGG 1 cut(s) 275
BcnI CCSGG 1 cut(s) 320
BcoDI GTCTC 4 cut(s) 29, 810, 923, 991
BcuI ACTAGT 1 cut(s) 547
BfaI CTAG 5 cut(s) 338, 399, 473, 548, 591
BfoI RGCGCY 1 cut(s) 750
BfrI CTTAAG 1 cut(s) 508
BfuAI ACCTGC 1 cut(s) 833
BglII AGATCT 1 cut(s) 100
BisI GCNGC 3 cut(s) 219, 517, 982
BlsI GCNGC 3 cut(s) 220, 518, 983
Bme1390I CCNGG 2 cut(s) 275, 320
BmeRI GACNNNNNGTC 1 cut(s) 574
BmgBI CACGTC 1 cut(s) 39
BmrFI CCNGG 2 cut(s) 275, 320
BmsI GCATC 4 cut(s) 313, 445, 829, 999
BoxI GACNNNNGTC 1 cut(s) 921
BplI GAGNNNNNCTC 2 cut(s) 76, 108
BpmI CTGGAG 2 cut(s) 635, 947
BpuMI CCSGG 1 cut(s) 320
BsaI GGTCTC 1 cut(s) 923
BsaJI CCNNGG 3 cut(s) 128, 273, 274
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse118I RCCGGY 1 cut(s) 986
Bse1I ACTGG 1 cut(s) 440
Bse21I CCTNAGG 1 cut(s) 725
Bse3DI GCAATG 1 cut(s) 855
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 3 cut(s) 128, 273, 274
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 1 cut(s) 201
BseMI GCAATG 1 cut(s) 855
BseMII CTCAG 3 cut(s) 107, 764, 901
BseNI ACTGG 1 cut(s) 440
BseRI GAGGAG 1 cut(s) 58
BseSI GKGCMC 1 cut(s) 320
BseXI GCAGC 3 cut(s) 205, 503, 968
BsgI GTGCAG 1 cut(s) 967
Bsh1236I CGCG 1 cut(s) 186
BsiSI CCGG 2 cut(s) 320, 987
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 4 cut(s) 29, 810, 923, 991
BsmBI CGTCTC 2 cut(s) 29, 991
Bso31I GGTCTC 1 cut(s) 923
Bsp1286I GDGCHC 1 cut(s) 320
Bsp143I GATC 2 cut(s) 100, 205
Bsp19I CCATGG 1 cut(s) 128
BspCNI CTCAG 3 cut(s) 106, 763, 900
BspFNI CGCG 1 cut(s) 186
BspMI ACCTGC 1 cut(s) 833
BspPI GGATC 1 cut(s) 213
BspTI CTTAAG 1 cut(s) 508
BspTNI GGTCTC 1 cut(s) 923
BsrDI GCAATG 1 cut(s) 855
BsrFI RCCGGY 1 cut(s) 986
BsrI ACTGG 1 cut(s) 440
BssAI RCCGGY 1 cut(s) 986
BssECI CCNNGG 3 cut(s) 128, 273, 274
BssMI GATC 2 cut(s) 100, 205
BssT1I CCWWGG 1 cut(s) 128
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 1 cut(s) 290
Bst6I CTCTTC 3 cut(s) 18, 27, 1005
BstAFI CTTAAG 1 cut(s) 508
BstC8I GCNNGC 1 cut(s) 460
BstDEI CTNAG 6 cut(s) 93, 571, 725, 733, 750, 887
BstDSI CCRYGG 1 cut(s) 128
BstEII GGTNACC 1 cut(s) 448
BstF5I GGATG 1 cut(s) 328
BstFNI CGCG 1 cut(s) 186
BstH2I RGCGCY 1 cut(s) 750
BstHHI GCGC 2 cut(s) 186, 749
BstKTI GATC 2 cut(s) 103, 208
BstMAI GTCTC 4 cut(s) 29, 810, 923, 991
BstMBI GATC 2 cut(s) 100, 205
BstMWI GCNNNNNNNGC 2 cut(s) 522, 987
BstNI CCWGG 1 cut(s) 275
BstNSI RCATGY 2 cut(s) 948, 1044
BstPAI GACNNNNGTC 1 cut(s) 921
BstPI GGTNACC 1 cut(s) 448
BstSCI CCNGG 2 cut(s) 273, 318
BstSLI GKGCMC 1 cut(s) 320
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 3 cut(s) 205, 503, 968
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
Bsu36I CCTNAGG 1 cut(s) 725
BtgI CCRYGG 1 cut(s) 128
BtrI CACGTC 1 cut(s) 39
BtsCI GGATG 1 cut(s) 328
BtsIMutI CAGTG 2 cut(s) 495, 578
BveI ACCTGC 1 cut(s) 833
Cac8I GCNNGC 1 cut(s) 460
CfoI GCGC 2 cut(s) 186, 749
Cfr10I RCCGGY 1 cut(s) 986
Csp6I GTAC 3 cut(s) 81, 870, 1052
CviAII CATG 5 cut(s) 129, 700, 819, 945, 1041
CviQI GTAC 3 cut(s) 81, 870, 1052
DdeI CTNAG 6 cut(s) 93, 571, 725, 733, 750, 887
DpnI GATC 2 cut(s) 102, 207
DpnII GATC 2 cut(s) 100, 205
DraIII CACNNNGTG 1 cut(s) 594
DriI GACNNNNNGTC 1 cut(s) 574
Eam1104I CTCTTC 3 cut(s) 18, 27, 1005
Eam1105I GACNNNNNGTC 1 cut(s) 574
EarI CTCTTC 3 cut(s) 18, 27, 1005
Eco130I CCWWGG 1 cut(s) 128
Eco31I GGTCTC 1 cut(s) 923
Eco32I GATATC 3 cut(s) 239, 372, 708
Eco57I CTGAAG 1 cut(s) 1004
Eco81I CCTNAGG 1 cut(s) 725
Eco91I GGTNACC 1 cut(s) 448
EcoO65I GGTNACC 1 cut(s) 448
EcoRII CCWGG 1 cut(s) 273
EcoRV GATATC 3 cut(s) 239, 372, 708
EcoT14I CCWWGG 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 128
Esp3I CGTCTC 2 cut(s) 29, 991
FaeI CATG 5 cut(s) 132, 703, 822, 948, 1044
FalI AAGNNNNNCTT 2 cut(s) 1002, 1034
FatI CATG 5 cut(s) 128, 699, 818, 944, 1040
FauNDI CATATG 1 cut(s) 404
Fnu4HI GCNGC 3 cut(s) 219, 517, 982
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 3 cut(s) 219, 517, 982
FspBI CTAG 5 cut(s) 338, 399, 473, 548, 591
GlaI GCGC 2 cut(s) 185, 748
GluI GCNGC 3 cut(s) 219, 517, 982
GsuI CTGGAG 2 cut(s) 635, 947
HaeII RGCGCY 1 cut(s) 750
HapII CCGG 2 cut(s) 320, 987
HhaI GCGC 2 cut(s) 186, 749
Hin1II CATG 5 cut(s) 132, 703, 822, 948, 1044
Hin6I GCGC 2 cut(s) 184, 747
HinP1I GCGC 2 cut(s) 184, 747
HinfI GANTC 5 cut(s) 334, 349, 384, 575, 803
HpaII CCGG 2 cut(s) 320, 987
HphI GGTGA 3 cut(s) 460, 922, 952
Hpy166II GTNNAC 2 cut(s) 286, 1054
Hpy188I TCNGA 6 cut(s) 96, 354, 376, 753, 763, 1023
Hpy188III TCNNGA 7 cut(s) 263, 338, 566, 652, 926, 968, 994
Hpy8I GTNNAC 2 cut(s) 286, 1054
HpyAV CCTTC 1 cut(s) 168
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4IV ACGT 3 cut(s) 38, 357, 441
HpyCH4V TGCA 7 cut(s) 200, 486, 519, 544, 792, 842, 984
HpyF10VI GCNNNNNNNGC 2 cut(s) 522, 987
HpyF3I CTNAG 6 cut(s) 93, 571, 725, 733, 750, 887
HpySE526I ACGT 3 cut(s) 38, 357, 441
Hsp92II CATG 5 cut(s) 132, 703, 822, 948, 1044
HspAI GCGC 2 cut(s) 184, 747
Kzo9I GATC 2 cut(s) 100, 205
Lsp1109I GCAGC 3 cut(s) 205, 503, 968
LweI GCATC 4 cut(s) 313, 445, 829, 999
MaeI CTAG 5 cut(s) 338, 399, 473, 548, 591
MaeII ACGT 3 cut(s) 38, 357, 441
MaeIII GTNAC 5 cut(s) 16, 55, 448, 576, 910
MalI GATC 2 cut(s) 102, 207
MboI GATC 2 cut(s) 100, 205
MboII GAAGA 7 cut(s) 22, 35, 41, 44, 490, 715, 1022
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 320
MluCI AATT 5 cut(s) 105, 178, 266, 481, 881
MlyI GAGTC 3 cut(s) 343, 584, 812
MnlI CCTC 8 cut(s) 19, 36, 102, 155, 760, 883, 887, 1041
MseI TTAA 5 cut(s) 297, 416, 509, 600, 659
MspA1I CMGCKG 1 cut(s) 1059
MspCI CTTAAG 1 cut(s) 508
MspI CCGG 2 cut(s) 320, 987
MspR9I CCNGG 2 cut(s) 275, 320
MvaI CCWGG 1 cut(s) 275
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 2 cut(s) 522, 987
NciI CCSGG 1 cut(s) 320
NcoI CCATGG 1 cut(s) 128
NdeI CATATG 1 cut(s) 404
NdeII GATC 2 cut(s) 100, 205
NlaIII CATG 5 cut(s) 132, 703, 822, 948, 1044
NmuCI GTSAC 4 cut(s) 16, 448, 576, 910
NspI RCATGY 2 cut(s) 948, 1044
PaqCI CACCTGC 1 cut(s) 833
PasI CCCWGGG 1 cut(s) 274
PfeI GAWTC 2 cut(s) 349, 384
PkrI GCNGC 3 cut(s) 220, 518, 983
PleI GAGTC 3 cut(s) 342, 583, 811
PpsI GAGTC 3 cut(s) 342, 583, 811
PshAI GACNNNNGTC 1 cut(s) 921
Psp6I CCWGG 1 cut(s) 273
PspEI GGTNACC 1 cut(s) 448
PspGI CCWGG 1 cut(s) 273
PsuI RGATCY 1 cut(s) 100
PvuII CAGCTG 1 cut(s) 1059
RsaI GTAC 3 cut(s) 82, 871, 1053
RsaNI GTAC 3 cut(s) 81, 870, 1052
SaqAI TTAA 5 cut(s) 297, 416, 509, 600, 659
SatI GCNGC 3 cut(s) 219, 517, 982
Sau3AI GATC 2 cut(s) 100, 205
SchI GAGTC 3 cut(s) 343, 584, 812
ScrFI CCNGG 2 cut(s) 275, 320
SduI GDGCHC 1 cut(s) 320
SfaNI GCATC 4 cut(s) 313, 445, 829, 999
SmlI CTYRAG 1 cut(s) 508
SmoI CTYRAG 1 cut(s) 508
SpeI ACTAGT 1 cut(s) 547
Sse9I AATT 5 cut(s) 105, 178, 266, 481, 881
SspMI CTAG 5 cut(s) 338, 399, 473, 548, 591
StyD4I CCNGG 2 cut(s) 273, 318
StyI CCWWGG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 290
TaiI ACGT 3 cut(s) 41, 360, 444
TaqI TCGA 4 cut(s) 241, 387, 879, 950
TaqII GACCGA 1 cut(s) 467
TasI AATT 5 cut(s) 105, 178, 266, 481, 881
TatI WGTACW 1 cut(s) 1051
TfiI GAWTC 2 cut(s) 349, 384
Tru1I TTAA 5 cut(s) 297, 416, 509, 600, 659
Tru9I TTAA 5 cut(s) 297, 416, 509, 600, 659
TscAI CASTG 2 cut(s) 502, 585
TseFI GTSAC 4 cut(s) 16, 448, 576, 910
TseI GCWGC 3 cut(s) 218, 516, 981
Tsp45I GTSAC 4 cut(s) 16, 448, 576, 910
TspDTI ATGAA 1 cut(s) 716
TspGWI ACGGA 1 cut(s) 545
TspRI CASTG 2 cut(s) 502, 585
Vha464I CTTAAG 1 cut(s) 508
XapI RAATTY 2 cut(s) 266, 881
XbaI TCTAGA 1 cut(s) 337
XceI RCATGY 2 cut(s) 948, 1044
XspI CTAG 5 cut(s) 338, 399, 473, 548, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.