FvH4_6g21620

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011155
Physical Location & Seq
Forward (+)
15166888 .. 15170343
3456 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21620.t2

Sequence Viewer

Length: 918 bp
ATGGAAGTGGAAGTAGCTGATGACGTAACTTGGAGCAGAGAAACAGTTCCCAAGGTTCTGAAGATAGTGAGCACAAGACTAGCTCAGAGAGACCTCATCTCTCTCTTGTTAGTCAGCCCTTGGCTCAACGCCACTCTCATCTCCCACCCTTCCCTTTGGCTGCTTATCGATTTTCGTGAGATGAATGATGCTGGGAATCGCCTAATAGCTGCTCTGTCACTGCCGCGGTATCGGCATGTGAAGCAGATAAACCTTGAATTTGCTCAGGATATTGAAGACAAACATCTTCAAATCATAAAGGACAAGTGTCTTGATTCTCTTCAAGACCTTGAAGTTCTGAATCTGAATAGCTGCCAAAAGATTTCTGATAAGGGAGTTGAAGATATAACCAGTGCTTGTACCAATCTGAAAGTCTTTTCTATTTATTGGAATGTGAGGGTCACAGATACAGGTATAACACACCTGGTGAAGAATTGCAAGTATATCATTGATCTGAATATAAGTGGCTGTAAGAATCTTTCAGACAAAAGTTTGCAACTGGTTGCTCAGACTTATCCAGAATTGGAGGTGCTGAATCTGACAAGGTGTGTCAAGTTAACAGATTTTGGCTTGCAGCAGATATTGAACAGTTGCTCCAGTCTCCAGAGTCTCAACTTATATGCCCTATCTAGCTTCACTGATGAAGCTTACAAGAGGATATCACTTTTAGCCCATCTTAAATTCTTGGATCTATGTGGTGCCCAGAATCTATCAGATGAAGGGCTTTCTTGTATAGCTAGATGCAACGGCCTTCTCTCTCTCAGTTTGACATGGTGCGTACGTGTCACTGATGTGGGGGTCATAGCCATTGCAGAGAGTTGCACCTCTCTCGAATACCTCAGGGTTCCCATGCTTTTGAATGATTCACGGAAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

306

Amino Acids

34.29

Weight (kDa)

5.78

Isoelectric Point (pI)

34.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 132 - 282 1.5e-14 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58530
fragaria_vesca FvH4_6g21620 FvH4_6g21620
malus_domestica MD12G1053200.v1.1 MD14G1051600.v1.1
prunus_persica Prupe.7G084400_v2.0.a1
pyrus_communis pycom12g04660 pycom14g04290 pycom14g04300
rosa_chinensis RchiOBHm_Chr3g0478871
rosa_laevigata RLG00000023619
rosa_multiflora Rmu_sc0004831.1_g000004 Rmu_sc0005751.1_g000013
rosa_roxburghii Rroxscaffold_6G00403010
rosa_rugosa Rorug03G0168800
rosa_samantha Rh3AG220400 Rh3BG252300 Rh3CG249100 Rh3DG245300
rosa_wichuraiana Rw3G019820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 737
AccII CGCG 1 cut(s) 226
AciI CCGC 2 cut(s) 224, 226
AclWI GGATC 1 cut(s) 735
AcsI RAATTY 2 cut(s) 257, 719
AcuI CTGAAG 1 cut(s) 80
AdeI CACNNNGTG 1 cut(s) 466
AfaI GTAC 2 cut(s) 400, 819
AflIII ACRYGT 1 cut(s) 820
AgsI TTSAA 8 cut(s) 257, 275, 290, 323, 332, 380, 625, 898
AjnI CCWGG 1 cut(s) 462
AleI CACNNNNGTG 1 cut(s) 830
AloI GAACNNNNNNTCC 2 cut(s) 617, 649
AluBI AGCT 7 cut(s) 17, 83, 209, 351, 672, 686, 776
AluI AGCT 7 cut(s) 17, 83, 209, 351, 672, 686, 776
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 3 cut(s) 84, 644, 653
AlwI GGATC 1 cut(s) 735
AoxI GGCC 1 cut(s) 787
ApeKI GCWGC 4 cut(s) 160, 209, 351, 613
ApoI RAATTY 2 cut(s) 257, 719
Asp700I GAANNNNTTC 1 cut(s) 45
AsuHPI GGTGA 1 cut(s) 478
AxyI CCTNAGG 1 cut(s) 878
BaeGI GKGCMC 1 cut(s) 742
BanI GGYRCC 1 cut(s) 737
BbsI GAAGAC 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 74
BbvI GCAGC 4 cut(s) 147, 196, 338, 625
BccI CCATC 1 cut(s) 720
BceAI ACGGC 1 cut(s) 802
BcgI CGANNNNNNTGC 2 cut(s) 850, 884
BciT130I CCWGG 1 cut(s) 464
BcoDI GTCTC 3 cut(s) 84, 644, 653
BfaI CTAG 3 cut(s) 80, 669, 777
BisI GCNGC 5 cut(s) 161, 210, 224, 352, 614
BlsI GCNGC 5 cut(s) 162, 211, 225, 353, 615
Bme1390I CCNGG 1 cut(s) 464
BmiI GGNNCC 2 cut(s) 739, 885
BmrFI CCNGG 1 cut(s) 464
BmsI GCATC 2 cut(s) 178, 770
BoxI GACNNNNGTC 1 cut(s) 306
BpiI GAAGAC 1 cut(s) 282
BpmI CTGGAG 2 cut(s) 619, 626
Bpu10I CCTNAGC 1 cut(s) 264
Bsa29I ATCGAT 1 cut(s) 168
BsaAI YACGTR 1 cut(s) 821
BsaI GGTCTC 1 cut(s) 84
BsaJI CCNNGG 3 cut(s) 51, 119, 224
BsaXI ACNNNNNCTCC 2 cut(s) 617, 647
Bse1I ACTGG 3 cut(s) 390, 543, 636
Bse21I CCTNAGG 1 cut(s) 878
Bse3DI GCAATG 1 cut(s) 846
BseBI CCWGG 1 cut(s) 464
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 3 cut(s) 51, 119, 224
BseMI GCAATG 1 cut(s) 846
BseMII CTCAG 5 cut(s) 98, 278, 560, 814, 892
BseNI ACTGG 3 cut(s) 390, 543, 636
BseSI GKGCMC 1 cut(s) 742
BseXI GCAGC 4 cut(s) 147, 196, 338, 625
BseYI CCCAGC 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 226
BshFI GGCC 1 cut(s) 789
BshNI GGYRCC 1 cut(s) 737
BshVI ATCGAT 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 74
BsiWI CGTACG 1 cut(s) 817
BsmAI GTCTC 3 cut(s) 84, 644, 653
BsnI GGCC 1 cut(s) 789
Bso31I GGTCTC 1 cut(s) 84
Bsp1286I GDGCHC 2 cut(s) 74, 742
Bsp143I GATC 2 cut(s) 490, 727
BspACI CCGC 2 cut(s) 224, 226
BspANI GGCC 1 cut(s) 789
BspCNI CTCAG 5 cut(s) 97, 277, 559, 813, 891
BspDI ATCGAT 1 cut(s) 168
BspFNI CGCG 1 cut(s) 226
BspLI GGNNCC 2 cut(s) 739, 885
BspPI GGATC 1 cut(s) 735
BspT107I GGYRCC 1 cut(s) 737
BspTNI GGTCTC 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 846
BsrI ACTGG 3 cut(s) 390, 543, 636
BssECI CCNNGG 3 cut(s) 51, 119, 224
BssMI GATC 2 cut(s) 490, 727
BssT1I CCWWGG 2 cut(s) 51, 119
Bst2UI CCWGG 1 cut(s) 464
Bst4CI ACNGT 2 cut(s) 46, 629
Bst6I CTCTTC 1 cut(s) 324
BstBAI YACGTR 1 cut(s) 821
BstC8I GCNNGC 1 cut(s) 611
BstDEI CTNAG 5 cut(s) 84, 264, 546, 800, 878
BstDSI CCRYGG 1 cut(s) 224
BstFNI CGCG 1 cut(s) 226
BstKTI GATC 2 cut(s) 493, 730
BstMAI GTCTC 3 cut(s) 84, 644, 653
BstMBI GATC 2 cut(s) 490, 727
BstMWI GCNNNNNNNGC 2 cut(s) 232, 241
BstNI CCWGG 1 cut(s) 464
BstNSI RCATGY 1 cut(s) 239
BstPAI GACNNNNGTC 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 462
BstSLI GKGCMC 1 cut(s) 742
BstUI CGCG 1 cut(s) 226
BstV1I GCAGC 4 cut(s) 147, 196, 338, 625
BstV2I GAAGAC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 727
BstYI RGATCY 1 cut(s) 727
Bsu15I ATCGAT 1 cut(s) 168
Bsu36I CCTNAGG 1 cut(s) 878
BsuRI GGCC 1 cut(s) 789
BsuTUI ATCGAT 1 cut(s) 168
BtgI CCRYGG 1 cut(s) 224
BtsI GCAGTG 1 cut(s) 218
BtsIMutI CAGTG 4 cut(s) 218, 397, 675, 825
Cac8I GCNNGC 1 cut(s) 611
Cfr42I CCGCGG 1 cut(s) 227
ClaI ATCGAT 1 cut(s) 168
CsiI ACCWGGT 1 cut(s) 462
Csp6I GTAC 2 cut(s) 399, 818
CviAII CATG 3 cut(s) 236, 810, 889
CviQI GTAC 2 cut(s) 399, 818
DdeI CTNAG 5 cut(s) 84, 264, 546, 800, 878
DpnI GATC 2 cut(s) 492, 729
DpnII GATC 2 cut(s) 490, 727
DraIII CACNNNGTG 1 cut(s) 466
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Eco130I CCWWGG 2 cut(s) 51, 119
Eco31I GGTCTC 1 cut(s) 84
Eco32I GATATC 1 cut(s) 699
Eco57I CTGAAG 1 cut(s) 80
Eco81I CCTNAGG 1 cut(s) 878
EcoRII CCWGG 1 cut(s) 462
EcoRV GATATC 1 cut(s) 699
EcoT14I CCWWGG 2 cut(s) 51, 119
ErhI CCWWGG 2 cut(s) 51, 119
FaeI CATG 3 cut(s) 239, 813, 892
FatI CATG 3 cut(s) 235, 809, 888
Fnu4HI GCNGC 5 cut(s) 161, 210, 224, 352, 614
Fsp4HI GCNGC 5 cut(s) 161, 210, 224, 352, 614
FspBI CTAG 3 cut(s) 80, 669, 777
GluI GCNGC 5 cut(s) 161, 210, 224, 352, 614
GsaI CCCAGC 1 cut(s) 195
GsuI CTGGAG 2 cut(s) 619, 626
HaeIII GGCC 1 cut(s) 789
Hin1II CATG 3 cut(s) 239, 813, 892
HincII GTYRAC 1 cut(s) 597
HindII GTYRAC 1 cut(s) 597
HindIII AAGCTT 1 cut(s) 684
HinfI GANTC 8 cut(s) 196, 314, 340, 514, 574, 646, 745, 902
HpaI GTTAAC 1 cut(s) 597
HphI GGTGA 1 cut(s) 478
Hpy166II GTNNAC 1 cut(s) 597
Hpy188III TCNNGA 7 cut(s) 176, 266, 311, 323, 557, 643, 869
Hpy8I GTNNAC 1 cut(s) 597
HpyAV CCTTC 3 cut(s) 159, 752, 800
HpyCH4III ACNGT 2 cut(s) 46, 629
HpyCH4IV ACGT 2 cut(s) 24, 820
HpyCH4V TGCA 6 cut(s) 477, 535, 613, 783, 851, 861
HpyF10VI GCNNNNNNNGC 2 cut(s) 232, 241
HpyF3I CTNAG 5 cut(s) 84, 264, 546, 800, 878
HpySE526I ACGT 2 cut(s) 24, 820
Hsp92II CATG 3 cut(s) 239, 813, 892
KspAI GTTAAC 1 cut(s) 597
KspI CCGCGG 1 cut(s) 227
Kzo9I GATC 2 cut(s) 490, 727
LmnI GCTCC 2 cut(s) 33, 638
Lsp1109I GCAGC 4 cut(s) 147, 196, 338, 625
LweI GCATC 2 cut(s) 178, 770
MabI ACCWGGT 1 cut(s) 462
MaeI CTAG 3 cut(s) 80, 669, 777
MaeII ACGT 2 cut(s) 24, 820
MaeIII GTNAC 4 cut(s) 25, 216, 439, 823
MalI GATC 2 cut(s) 492, 729
MboI GATC 2 cut(s) 490, 727
MboII GAAGA 6 cut(s) 73, 278, 287, 311, 392, 481
MflI RGATCY 1 cut(s) 727
MhlI GDGCHC 2 cut(s) 74, 742
MluCI AATT 4 cut(s) 257, 472, 560, 719
MlyI GAGTC 1 cut(s) 655
MnlI CCTC 6 cut(s) 104, 429, 559, 687, 874, 887
MroXI GAANNNNTTC 1 cut(s) 45
MseI TTAA 2 cut(s) 596, 717
MslI CAYNNNNRTG 1 cut(s) 830
MspA1I CMGCKG 1 cut(s) 226
MspR9I CCNGG 1 cut(s) 464
MvaI CCWGG 1 cut(s) 464
MvnI CGCG 1 cut(s) 226
MwoI GCNNNNNNNGC 2 cut(s) 232, 241
NdeII GATC 2 cut(s) 490, 727
NlaIII CATG 3 cut(s) 239, 813, 892
NlaIV GGNNCC 2 cut(s) 739, 885
NmuCI GTSAC 3 cut(s) 216, 439, 823
NspI RCATGY 1 cut(s) 239
OliI CACNNNNGTG 1 cut(s) 830
PdmI GAANNNNTTC 1 cut(s) 45
PfeI GAWTC 7 cut(s) 196, 314, 340, 514, 574, 745, 902
Pfl23II CGTACG 1 cut(s) 817
PkrI GCNGC 5 cut(s) 162, 211, 225, 353, 615
PleI GAGTC 1 cut(s) 654
PpsI GAGTC 1 cut(s) 654
Ppu21I YACGTR 1 cut(s) 821
PshAI GACNNNNGTC 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 462
PspFI CCCAGC 1 cut(s) 191
PspGI CCWGG 1 cut(s) 462
PspLI CGTACG 1 cut(s) 817
PspN4I GGNNCC 2 cut(s) 739, 885
PsuI RGATCY 1 cut(s) 727
RsaI GTAC 2 cut(s) 400, 819
RsaNI GTAC 2 cut(s) 399, 818
RseI CAYNNNNRTG 1 cut(s) 830
SacII CCGCGG 1 cut(s) 227
SaqAI TTAA 2 cut(s) 596, 717
SatI GCNGC 5 cut(s) 161, 210, 224, 352, 614
Sau3AI GATC 2 cut(s) 490, 727
SchI GAGTC 1 cut(s) 655
ScrFI CCNGG 1 cut(s) 464
SduI GDGCHC 2 cut(s) 74, 742
SexAI ACCWGGT 1 cut(s) 462
SfaNI GCATC 2 cut(s) 178, 770
Sfr303I CCGCGG 1 cut(s) 227
SgrBI CCGCGG 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 830
Sse9I AATT 4 cut(s) 257, 472, 560, 719
SsiI CCGC 2 cut(s) 224, 226
SspMI CTAG 3 cut(s) 80, 669, 777
StyD4I CCNGG 1 cut(s) 462
StyI CCWWGG 2 cut(s) 51, 119
TaaI ACNGT 2 cut(s) 46, 629
TaiI ACGT 2 cut(s) 27, 823
TaqI TCGA 2 cut(s) 168, 870
TasI AATT 4 cut(s) 257, 472, 560, 719
TauI GCSGC 1 cut(s) 226
TfiI GAWTC 7 cut(s) 196, 314, 340, 514, 574, 745, 902
Tru1I TTAA 2 cut(s) 596, 717
Tru9I TTAA 2 cut(s) 596, 717
TscAI CASTG 4 cut(s) 225, 397, 682, 832
TseFI GTSAC 3 cut(s) 216, 439, 823
TseI GCWGC 4 cut(s) 160, 209, 351, 613
Tsp45I GTSAC 3 cut(s) 216, 439, 823
TspDTI ATGAA 3 cut(s) 197, 696, 771
TspRI CASTG 4 cut(s) 225, 397, 682, 832
XapI RAATTY 2 cut(s) 257, 719
XceI RCATGY 1 cut(s) 239
XmnI GAANNNNTTC 1 cut(s) 45
XspI CTAG 3 cut(s) 80, 669, 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.