Rmu_sc0005751.1_g000013

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005751.1
OG0011155
Physical Location & Seq
Forward (+)
51180 .. 54724
3545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005751.1_g000013.1.cds

Sequence Viewer

Length: 1053 bp
atggaagtagaaggtggtgaggaggtgacatggagcagagaaacagttcccaaggttgtgaagatagtgagcacaagactccctcagagagacctcatctctctcttgctagtcagcccatggctcaacgctactctcatctcccacccttccctttggctgcttatcgattttcgtgaaatgaataatgctgggaatcgcctaatggctgctctgtcactgccgcgatatcggcatgtgaagcagataaaccttgaatttgcacaagatattgaagacaaacatcttgaactcataaggaacaagtgttttggttctcttcaaagccttgaagttttgaatctgaatagctgccagaagatttctgataagggagttcaagatataaccagtgcttgtgccaatctgaaggtcttttctatttattggaatgtgagggtgacagatataggtataacacacctggtgaaaaattgcaagtatatcattgatctgaatataagtggctgtaagaatcttttagacaaaagtttgcaactggttgctcagacttatccagaattagagttgctgaatctgacaaggtgtgtcaagttaacagattttggcttgcagcagatattgaacagttgctccagtctccagagtctcaacttatacgccctgtctagcttcactgatgaagcttacaagaggatatcacttctaacccatcttaaattcttggatctatgtggtgcccagaatctatcagatgaagggctttcttatatagctagatgcaagggccttctgtctctcagtttgacatggtgtgtacgtgtcactgatgtgggggtcatagccattgcagagagttgctcctctctcgaatatctcagcttatttgggatagttggggtgaccgatgcatgcctggattccctctcaaggacctgttcgaacacaattactactcttgatgtgaatggatgtattggaattaagagacggagtcgtgatgaattgcttaaattgtttccaaagttgcggtgcttcaaagtgcacagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

350

Amino Acids

39.24

Weight (kDa)

8.12

Isoelectric Point (pI)

36.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58530
fragaria_vesca FvH4_6g21620 FvH4_6g21620
malus_domestica MD12G1053200.v1.1 MD14G1051600.v1.1
prunus_persica Prupe.7G084400_v2.0.a1
pyrus_communis pycom12g04660 pycom14g04290 pycom14g04300
rosa_chinensis RchiOBHm_Chr3g0478871
rosa_laevigata RLG00000023619
rosa_multiflora Rmu_sc0004831.1_g000004 Rmu_sc0005751.1_g000013
rosa_roxburghii Rroxscaffold_6G00403010
rosa_rugosa Rorug03G0168800
rosa_samantha Rh3AG220400 Rh3BG252300 Rh3CG249100 Rh3DG245300
rosa_wichuraiana Rw3G019820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 737
AccII CGCG 1 cut(s) 226
AciI CCGC 2 cut(s) 224, 1030
AclWI GGATC 1 cut(s) 735
AcsI RAATTY 2 cut(s) 257, 719
AcuI CTGAAG 1 cut(s) 428
AdeI CACNNNGTG 1 cut(s) 466
AfaI GTAC 1 cut(s) 819
AfiI CCNNNNNNNGG 1 cut(s) 930
AflIII ACRYGT 1 cut(s) 820
AgsI TTSAA 9 cut(s) 257, 275, 290, 323, 332, 340, 380, 625, 1039
AjnI CCWGG 2 cut(s) 462, 915
AleI CACNNNNGTG 1 cut(s) 830
AloI GAACNNNNNNTCC 2 cut(s) 617, 649
AluBI AGCT 6 cut(s) 351, 672, 686, 776, 882, 1050
AluI AGCT 6 cut(s) 351, 672, 686, 776, 882, 1050
Alw21I GWGCWC 2 cut(s) 74, 1047
Alw26I GTCTC 5 cut(s) 84, 644, 653, 801, 982
Alw44I GTGCAC 1 cut(s) 1043
AlwI GGATC 1 cut(s) 735
AoxI GGCC 1 cut(s) 787
ApaLI GTGCAC 1 cut(s) 1043
ApeKI GCWGC 4 cut(s) 160, 209, 351, 613
ApoI RAATTY 2 cut(s) 257, 719
Asp700I GAANNNNTTC 1 cut(s) 45
AspS9I GGNCC 2 cut(s) 787, 933
AsuHPI GGTGA 5 cut(s) 29, 37, 451, 478, 913
AsuII TTCGAA 1 cut(s) 941
AvaII GGWCC 1 cut(s) 933
BaeGI GKGCMC 2 cut(s) 742, 1047
BanI GGYRCC 1 cut(s) 737
BbsI GAAGAC 1 cut(s) 282
Bbv12I GWGCWC 2 cut(s) 74, 1047
BbvI GCAGC 4 cut(s) 147, 196, 338, 625
BccI CCATC 1 cut(s) 720
BciT130I CCWGG 2 cut(s) 464, 917
BcoDI GTCTC 5 cut(s) 84, 644, 653, 801, 982
BfaI CTAG 3 cut(s) 110, 669, 777
BisI GCNGC 5 cut(s) 161, 210, 224, 352, 614
BlsI GCNGC 5 cut(s) 162, 211, 225, 353, 615
Bme1390I CCNGG 2 cut(s) 464, 917
Bme18I GGWCC 1 cut(s) 933
BmgT120I GGNCC 2 cut(s) 787, 933
BmiI GGNNCC 1 cut(s) 739
BmrFI CCNGG 2 cut(s) 464, 917
BmsI GCATC 2 cut(s) 770, 898
BpiI GAAGAC 1 cut(s) 282
BplI GAGNNNNNCTC 2 cut(s) 845, 877
BpmI CTGGAG 2 cut(s) 619, 626
Bpu14I TTCGAA 1 cut(s) 941
BpuEI CTTGAG 1 cut(s) 913
Bsa29I ATCGAT 1 cut(s) 168
BsaAI YACGTR 1 cut(s) 821
BsaI GGTCTC 1 cut(s) 84
BsaJI CCNNGG 2 cut(s) 51, 119
BsaXI ACNNNNNCTCC 2 cut(s) 617, 647
Bsc4I CCNNNNNNNGG 1 cut(s) 930
Bse1I ACTGG 3 cut(s) 390, 543, 636
Bse3DI GCAATG 1 cut(s) 846
BseBI CCWGG 2 cut(s) 464, 917
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 51, 119
BseGI GGATG 1 cut(s) 977
BseLI CCNNNNNNNGG 1 cut(s) 930
BseMI GCAATG 1 cut(s) 846
BseMII CTCAG 4 cut(s) 98, 560, 814, 892
BseNI ACTGG 3 cut(s) 390, 543, 636
BseRI GAGGAG 2 cut(s) 35, 853
BseSI GKGCMC 2 cut(s) 742, 1047
BseXI GCAGC 4 cut(s) 147, 196, 338, 625
BseYI CCCAGC 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 226
BshFI GGCC 1 cut(s) 789
BshNI GGYRCC 1 cut(s) 737
BshVI ATCGAT 1 cut(s) 168
BsiHKAI GWGCWC 2 cut(s) 74, 1047
BslI CCNNNNNNNGG 1 cut(s) 930
BsmAI GTCTC 5 cut(s) 84, 644, 653, 801, 982
BsmBI CGTCTC 1 cut(s) 982
BsnI GGCC 1 cut(s) 789
Bso31I GGTCTC 1 cut(s) 84
Bsp119I TTCGAA 1 cut(s) 941
Bsp1286I GDGCHC 3 cut(s) 74, 742, 1047
Bsp143I GATC 2 cut(s) 490, 727
Bsp19I CCATGG 1 cut(s) 119
BspACI CCGC 2 cut(s) 224, 1030
BspANI GGCC 1 cut(s) 789
BspCNI CTCAG 4 cut(s) 97, 559, 813, 891
BspDI ATCGAT 1 cut(s) 168
BspFNI CGCG 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 739
BspPI GGATC 1 cut(s) 735
BspT104I TTCGAA 1 cut(s) 941
BspT107I GGYRCC 1 cut(s) 737
BspTNI GGTCTC 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 846
BsrI ACTGG 3 cut(s) 390, 543, 636
BssECI CCNNGG 2 cut(s) 51, 119
BssMI GATC 2 cut(s) 490, 727
BssT1I CCWWGG 2 cut(s) 51, 119
Bst2UI CCWGG 2 cut(s) 464, 917
Bst4CI ACNGT 2 cut(s) 46, 629
Bst6I CTCTTC 1 cut(s) 324
BstBAI YACGTR 1 cut(s) 821
BstBI TTCGAA 1 cut(s) 941
BstC8I GCNNGC 2 cut(s) 611, 913
BstDEI CTNAG 4 cut(s) 84, 546, 800, 878
BstDSI CCRYGG 1 cut(s) 119
BstEII GGTNACC 1 cut(s) 901
BstF5I GGATG 1 cut(s) 977
BstFNI CGCG 1 cut(s) 226
BstKTI GATC 2 cut(s) 493, 730
BstMAI GTCTC 5 cut(s) 84, 644, 653, 801, 982
BstMBI GATC 2 cut(s) 490, 727
BstMWI GCNNNNNNNGC 2 cut(s) 232, 241
BstNI CCWGG 2 cut(s) 464, 917
BstNSI RCATGY 2 cut(s) 239, 915
BstPI GGTNACC 1 cut(s) 901
BstSCI CCNGG 2 cut(s) 462, 915
BstSLI GKGCMC 2 cut(s) 742, 1047
BstUI CGCG 1 cut(s) 226
BstV1I GCAGC 4 cut(s) 147, 196, 338, 625
BstV2I GAAGAC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 727
BstYI RGATCY 1 cut(s) 727
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 1 cut(s) 789
BsuTUI ATCGAT 1 cut(s) 168
BtgI CCRYGG 1 cut(s) 119
BtsCI GGATG 1 cut(s) 977
BtsI GCAGTG 1 cut(s) 218
BtsIMutI CAGTG 4 cut(s) 218, 397, 675, 825
Cac8I GCNNGC 2 cut(s) 611, 913
Cfr13I GGNCC 2 cut(s) 787, 933
ClaI ATCGAT 1 cut(s) 168
CsiI ACCWGGT 1 cut(s) 462
Csp6I GTAC 1 cut(s) 818
CviAII CATG 5 cut(s) 30, 120, 236, 810, 912
CviQI GTAC 1 cut(s) 818
DdeI CTNAG 4 cut(s) 84, 546, 800, 878
DpnI GATC 2 cut(s) 492, 729
DpnII GATC 2 cut(s) 490, 727
DraIII CACNNNGTG 1 cut(s) 466
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Eco130I CCWWGG 2 cut(s) 51, 119
Eco31I GGTCTC 1 cut(s) 84
Eco32I GATATC 2 cut(s) 230, 699
Eco47I GGWCC 1 cut(s) 933
Eco57I CTGAAG 1 cut(s) 428
Eco91I GGTNACC 1 cut(s) 901
EcoO109I RGGNCCY 2 cut(s) 787, 933
EcoO65I GGTNACC 1 cut(s) 901
EcoRII CCWGG 2 cut(s) 462, 915
EcoRV GATATC 2 cut(s) 230, 699
EcoT14I CCWWGG 2 cut(s) 51, 119
EcoT22I ATGCAT 1 cut(s) 913
ErhI CCWWGG 2 cut(s) 51, 119
Esp3I CGTCTC 1 cut(s) 982
FaeI CATG 5 cut(s) 33, 123, 239, 813, 915
FatI CATG 5 cut(s) 29, 119, 235, 809, 911
Fnu4HI GCNGC 5 cut(s) 161, 210, 224, 352, 614
FokI GGATG 1 cut(s) 984
Fsp4HI GCNGC 5 cut(s) 161, 210, 224, 352, 614
FspBI CTAG 3 cut(s) 110, 669, 777
GluI GCNGC 5 cut(s) 161, 210, 224, 352, 614
GsaI CCCAGC 1 cut(s) 195
GsuI CTGGAG 2 cut(s) 619, 626
HaeIII GGCC 1 cut(s) 789
Hin1II CATG 5 cut(s) 33, 123, 239, 813, 915
HincII GTYRAC 1 cut(s) 597
HindII GTYRAC 1 cut(s) 597
HindIII AAGCTT 1 cut(s) 684
HinfI GANTC 9 cut(s) 78, 196, 340, 514, 574, 646, 745, 920, 994
HpaI GTTAAC 1 cut(s) 597
HphI GGTGA 5 cut(s) 29, 37, 451, 478, 913
Hpy166II GTNNAC 3 cut(s) 597, 818, 1045
Hpy188I TCNGA 8 cut(s) 87, 345, 367, 408, 495, 549, 579, 754
Hpy188III TCNNGA 8 cut(s) 176, 287, 380, 557, 643, 869, 959, 998
Hpy8I GTNNAC 3 cut(s) 597, 818, 1045
HpyAV CCTTC 5 cut(s) 5, 159, 403, 752, 800
HpyCH4III ACNGT 2 cut(s) 46, 629
HpyCH4IV ACGT 1 cut(s) 820
HpyCH4V TGCA 8 cut(s) 263, 477, 535, 613, 783, 851, 911, 1045
HpyF10VI GCNNNNNNNGC 2 cut(s) 232, 241
HpyF3I CTNAG 4 cut(s) 84, 546, 800, 878
HpySE526I ACGT 1 cut(s) 820
Hsp92II CATG 5 cut(s) 33, 123, 239, 813, 915
KspAI GTTAAC 1 cut(s) 597
Kzo9I GATC 2 cut(s) 490, 727
LmnI GCTCC 3 cut(s) 33, 638, 866
Lsp1109I GCAGC 4 cut(s) 147, 196, 338, 625
LweI GCATC 2 cut(s) 770, 898
MabI ACCWGGT 1 cut(s) 462
MaeI CTAG 3 cut(s) 110, 669, 777
MaeII ACGT 1 cut(s) 820
MaeIII GTNAC 5 cut(s) 25, 216, 439, 823, 901
MalI GATC 2 cut(s) 492, 729
MboI GATC 2 cut(s) 490, 727
MboII GAAGA 4 cut(s) 73, 287, 311, 370
MflI RGATCY 1 cut(s) 727
MhlI GDGCHC 3 cut(s) 74, 742, 1047
MluCI AATT 8 cut(s) 257, 472, 560, 719, 948, 981, 1004, 1013
MlyI GAGTC 3 cut(s) 72, 655, 1003
MnlI CCTC 8 cut(s) 13, 16, 93, 104, 429, 687, 874, 935
Mph1103I ATGCAT 1 cut(s) 913
MroXI GAANNNNTTC 1 cut(s) 45
MseI TTAA 4 cut(s) 596, 717, 984, 1011
MslI CAYNNNNRTG 1 cut(s) 830
MspR9I CCNGG 2 cut(s) 464, 917
MvaI CCWGG 2 cut(s) 464, 917
MvnI CGCG 1 cut(s) 226
MwoI GCNNNNNNNGC 2 cut(s) 232, 241
NcoI CCATGG 1 cut(s) 119
NdeII GATC 2 cut(s) 490, 727
NlaIII CATG 5 cut(s) 33, 123, 239, 813, 915
NlaIV GGNNCC 1 cut(s) 739
NmuCI GTSAC 5 cut(s) 25, 216, 439, 823, 901
NsiI ATGCAT 1 cut(s) 913
NspI RCATGY 2 cut(s) 239, 915
NspV TTCGAA 1 cut(s) 941
OliI CACNNNNGTG 1 cut(s) 830
PaeI GCATGC 1 cut(s) 915
PdmI GAANNNNTTC 1 cut(s) 45
PfeI GAWTC 6 cut(s) 196, 340, 514, 574, 745, 920
PflFI GACNNNGTC 1 cut(s) 993
PkrI GCNGC 5 cut(s) 162, 211, 225, 353, 615
PleI GAGTC 3 cut(s) 72, 654, 1002
PpsI GAGTC 3 cut(s) 72, 654, 1002
Ppu21I YACGTR 1 cut(s) 821
PpuMI RGGWCCY 1 cut(s) 933
Psp5II RGGWCCY 1 cut(s) 933
Psp6I CCWGG 2 cut(s) 462, 915
PspEI GGTNACC 1 cut(s) 901
PspFI CCCAGC 1 cut(s) 191
PspGI CCWGG 2 cut(s) 462, 915
PspN4I GGNNCC 1 cut(s) 739
PspPI GGNCC 2 cut(s) 787, 933
PspPPI RGGWCCY 1 cut(s) 933
PsuI RGATCY 1 cut(s) 727
PsyI GACNNNGTC 1 cut(s) 993
RsaI GTAC 1 cut(s) 819
RsaNI GTAC 1 cut(s) 818
RseI CAYNNNNRTG 1 cut(s) 830
SaqAI TTAA 4 cut(s) 596, 717, 984, 1011
SatI GCNGC 5 cut(s) 161, 210, 224, 352, 614
Sau3AI GATC 2 cut(s) 490, 727
Sau96I GGNCC 2 cut(s) 787, 933
SchI GAGTC 3 cut(s) 72, 655, 1003
ScrFI CCNGG 2 cut(s) 464, 917
SduI GDGCHC 3 cut(s) 74, 742, 1047
SexAI ACCWGGT 1 cut(s) 462
SfaNI GCATC 2 cut(s) 770, 898
SfuI TTCGAA 1 cut(s) 941
SinI GGWCC 1 cut(s) 933
SmiMI CAYNNNNRTG 1 cut(s) 830
SmlI CTYRAG 1 cut(s) 928
SmoI CTYRAG 1 cut(s) 928
SphI GCATGC 1 cut(s) 915
Sse9I AATT 8 cut(s) 257, 472, 560, 719, 948, 981, 1004, 1013
SsiI CCGC 2 cut(s) 224, 1030
SspMI CTAG 3 cut(s) 110, 669, 777
StyD4I CCNGG 2 cut(s) 462, 915
StyI CCWWGG 2 cut(s) 51, 119
TaaI ACNGT 2 cut(s) 46, 629
TaiI ACGT 1 cut(s) 823
TaqI TCGA 3 cut(s) 168, 870, 941
TaqII GACCGA 1 cut(s) 920
TasI AATT 8 cut(s) 257, 472, 560, 719, 948, 981, 1004, 1013
TauI GCSGC 1 cut(s) 226
TfiI GAWTC 6 cut(s) 196, 340, 514, 574, 745, 920
Tru1I TTAA 4 cut(s) 596, 717, 984, 1011
Tru9I TTAA 4 cut(s) 596, 717, 984, 1011
TscAI CASTG 4 cut(s) 225, 397, 682, 832
TseFI GTSAC 5 cut(s) 25, 216, 439, 823, 901
TseI GCWGC 4 cut(s) 160, 209, 351, 613
Tsp45I GTSAC 5 cut(s) 25, 216, 439, 823, 901
TspDTI ATGAA 4 cut(s) 197, 696, 771, 1017
TspGWI ACGGA 1 cut(s) 1006
TspRI CASTG 4 cut(s) 225, 397, 682, 832
Tth111I GACNNNGTC 1 cut(s) 993
VneI GTGCAC 1 cut(s) 1043
VpaK11BI GGWCC 1 cut(s) 933
XapI RAATTY 2 cut(s) 257, 719
XceI RCATGY 2 cut(s) 239, 915
XmnI GAANNNNTTC 1 cut(s) 45
XspI CTAG 3 cut(s) 110, 669, 777
Zsp2I ATGCAT 1 cut(s) 913
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.