Prupe.7G084400_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0011155
Physical Location & Seq
Reverse (-)
11973905 .. 11978972
5068 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G084400.1

Sequence Viewer

Length: 1062 bp
ATGGAAGGGGAAGACGTAGAAGCAGCTGAGGAGGGGACTTGGAGCAGAGAAACCATTCCTAAGGTTCTGAAGATAGTGAGCGCAAGACTGTCTCAGAGAGACCTTATCTCTCTCTTGCTAGTTAGCCCATGGCTCAATGGAACTCTCGTCTCCTACCCTTCCCTTTGGCTGCTTCTCGATCTTCGTGAGATGAATAATGCTGGGAATCGCCTTATAGCTGCTCTTTCATTGCCGAGATATCGGCATGTGAAGCAGATAAACCTTGAATTTGCACAAGACATTGAAGACAAGCATCTTGAACTCATAAAGAACAAGTGTCTAGATTCTCTTCAAAACCTGGAGGTTTTGAATCTTAATGGCTGCCAGAAGATCTCTGATAAGGGAATTGAAGCTATAACCAGTGCTTGCCCTAATCTGAAGGTCTTTTCTATCTATTGGAATGTAAGGGTTACAGATATAGGTATAGCACACCTGGTGAAGAACTGCAAACATATAGTTGATCTGAATTTCAGTGGCTGTAAGAATCTTTCAGACAAAAGCTTGCAATTAGTGGCTCAGAATTATCCAGAATTAGAGTTGTTGAACCTGACCAGGTGTGTCAAGTTAACAGATTCTGGATTGCAGCAGATATTGCACGATTGCCCATGTCTCCATAGTCTTAATTTGTATGCCCTATCGAGCTTCACTGATGAAGCTTACAAGAGAATATCACTTCTTTCCCATCTTAAATTCTTGGATCTGTGTGGTGGCCAGAATCTATCAGATGAAGGGCTGTCTTGTATAGCTAGATGCAAGAGCCTCCTGTCTCTCAATTTGACATGGTGTGTACGTATCACTGATGTGGGGGTCATAGCTGTTGCGCAGGGTTGCACATCTCTTGAATTTCTCAGCTTATTTGGCATAGTTGGGGTGACCGATAAATGCCTGGAGTCCCTTTCAAGGACCTGCTCAAACACAATTACAACTCTTGACGTGAATGGCTGTATTGGAATTAAGAAACGGAGCCGTGACGAACTGCTTCAATTGTTTCCGAAGTTGCAGTGCTTCAAAGTACACAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

354

Amino Acids

39.37

Weight (kDa)

6.7

Isoelectric Point (pI)

30.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58530
fragaria_vesca FvH4_6g21620 FvH4_6g21620
malus_domestica MD12G1053200.v1.1 MD14G1051600.v1.1
prunus_persica Prupe.7G084400_v2.0.a1
pyrus_communis pycom12g04660 pycom14g04290 pycom14g04300
rosa_chinensis RchiOBHm_Chr3g0478871
rosa_laevigata RLG00000023619
rosa_multiflora Rmu_sc0004831.1_g000004 Rmu_sc0005751.1_g000013
rosa_roxburghii Rroxscaffold_6G00403010
rosa_rugosa Rorug03G0168800
rosa_samantha Rh3AG220400 Rh3BG252300 Rh3CG249100 Rh3DG245300
rosa_wichuraiana Rw3G019820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 861
Acc36I ACCTGC 1 cut(s) 953
AclWI GGATC 1 cut(s) 744
AcoI YGGCCR 1 cut(s) 748
AcsI RAATTY 4 cut(s) 266, 505, 728, 881
AcuI CTGAAG 2 cut(s) 89, 437
AdeI CACNNNGTG 1 cut(s) 475
AfaI GTAC 2 cut(s) 828, 1053
AfiI CCNNNNNNNGG 1 cut(s) 939
AjiI CACGTC 1 cut(s) 973
AjnI CCWGG 4 cut(s) 336, 471, 590, 924
AleI CACNNNNGTG 1 cut(s) 839
Alw26I GTCTC 5 cut(s) 93, 96, 154, 653, 810
AlwI GGATC 1 cut(s) 744
AlwNI CAGNNNCTG 2 cut(s) 516, 614
AoxI GGCC 1 cut(s) 748
ApeKI GCWGC 5 cut(s) 23, 169, 218, 360, 622
ApoI RAATTY 4 cut(s) 266, 505, 728, 881
Asp700I GAANNNNTTC 2 cut(s) 54, 1017
AspLEI GCGC 2 cut(s) 83, 862
AspS9I GGNCC 1 cut(s) 942
AsuHPI GGTGA 2 cut(s) 487, 922
AvaII GGWCC 1 cut(s) 942
AxyI CCTNAGG 1 cut(s) 60
BalI TGGCCA 1 cut(s) 750
BbsI GAAGAC 2 cut(s) 18, 291
BbvCI CCTCAGC 1 cut(s) 27
BbvI GCAGC 5 cut(s) 35, 156, 205, 347, 634
BccI CCATC 1 cut(s) 729
BceAI ACGGC 1 cut(s) 990
BciT130I CCWGG 4 cut(s) 338, 473, 592, 926
BcoDI GTCTC 5 cut(s) 93, 96, 154, 653, 810
BfaI CTAG 3 cut(s) 119, 320, 786
BfuAI ACCTGC 1 cut(s) 953
BglII AGATCT 1 cut(s) 369
BisI GCNGC 5 cut(s) 24, 170, 219, 361, 623
BlsI GCNGC 5 cut(s) 25, 171, 220, 362, 624
Bme1390I CCNGG 4 cut(s) 338, 473, 592, 926
Bme18I GGWCC 1 cut(s) 942
BmgBI CACGTC 1 cut(s) 973
BmgT120I GGNCC 1 cut(s) 942
BmiI GGNNCC 1 cut(s) 1004
BmrFI CCNGG 4 cut(s) 338, 473, 592, 926
BmsI GCATC 2 cut(s) 301, 779
BpiI GAAGAC 2 cut(s) 18, 291
BpmI CTGGAG 2 cut(s) 359, 947
Bpu10I CCTNAGC 1 cut(s) 27
BsaAI YACGTR 1 cut(s) 830
BsaI GGTCTC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 128
Bsc4I CCNNNNNNNGG 1 cut(s) 939
Bse1I ACTGG 1 cut(s) 399
Bse21I CCTNAGG 1 cut(s) 60
Bse3DI GCAATG 1 cut(s) 227
BseBI CCWGG 4 cut(s) 338, 473, 592, 926
BseDI CCNNGG 1 cut(s) 128
BseLI CCNNNNNNNGG 1 cut(s) 939
BseMI GCAATG 1 cut(s) 227
BseMII CTCAG 4 cut(s) 18, 107, 569, 901
BseNI ACTGG 1 cut(s) 399
BseRI GAGGAG 1 cut(s) 44
BseXI GCAGC 5 cut(s) 35, 156, 205, 347, 634
BseYI CCCAGC 1 cut(s) 200
BshFI GGCC 1 cut(s) 750
BslFI GGGAC 2 cut(s) 49, 916
BslI CCNNNNNNNGG 1 cut(s) 939
BsmAI GTCTC 5 cut(s) 93, 96, 154, 653, 810
BsmBI CGTCTC 1 cut(s) 154
BsmFI GGGAC 2 cut(s) 49, 916
BsnI GGCC 1 cut(s) 750
Bso31I GGTCTC 1 cut(s) 93
Bsp143I GATC 4 cut(s) 178, 369, 499, 736
Bsp19I CCATGG 1 cut(s) 128
BspANI GGCC 1 cut(s) 750
BspCNI CTCAG 4 cut(s) 19, 106, 568, 900
BspLI GGNNCC 1 cut(s) 1004
BspMI ACCTGC 1 cut(s) 953
BspPI GGATC 1 cut(s) 744
BspTNI GGTCTC 1 cut(s) 93
BsrDI GCAATG 1 cut(s) 227
BsrI ACTGG 1 cut(s) 399
BssECI CCNNGG 1 cut(s) 128
BssMI GATC 4 cut(s) 178, 369, 499, 736
BssT1I CCWWGG 1 cut(s) 128
Bst2UI CCWGG 4 cut(s) 338, 473, 592, 926
Bst4CI ACNGT 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 333
BstAPI GCANNNNNTGC 1 cut(s) 631
BstBAI YACGTR 1 cut(s) 830
BstC8I GCNNGC 2 cut(s) 406, 542
BstDEI CTNAG 5 cut(s) 27, 60, 93, 555, 887
BstDSI CCRYGG 1 cut(s) 128
BstEII GGTNACC 1 cut(s) 910
BstHHI GCGC 2 cut(s) 83, 862
BstKTI GATC 4 cut(s) 181, 372, 502, 739
BstMAI GTCTC 5 cut(s) 93, 96, 154, 653, 810
BstMBI GATC 4 cut(s) 178, 369, 499, 736
BstMWI GCNNNNNNNGC 3 cut(s) 250, 631, 897
BstNI CCWGG 4 cut(s) 338, 473, 592, 926
BstNSI RCATGY 1 cut(s) 248
BstPI GGTNACC 1 cut(s) 910
BstSCI CCNGG 4 cut(s) 336, 471, 590, 924
BstSNI TACGTA 1 cut(s) 830
BstV1I GCAGC 5 cut(s) 35, 156, 205, 347, 634
BstV2I GAAGAC 2 cut(s) 18, 291
BstX2I RGATCY 2 cut(s) 369, 736
BstYI RGATCY 2 cut(s) 369, 736
Bsu36I CCTNAGG 1 cut(s) 60
BsuRI GGCC 1 cut(s) 750
BtgI CCRYGG 1 cut(s) 128
BtrI CACGTC 1 cut(s) 973
BtsI GCAGTG 1 cut(s) 1046
BtsIMutI CAGTG 5 cut(s) 406, 517, 684, 834, 1046
BveI ACCTGC 1 cut(s) 953
Cac8I GCNNGC 2 cut(s) 406, 542
CaiI CAGNNNCTG 2 cut(s) 516, 614
CfoI GCGC 2 cut(s) 83, 862
Cfr13I GGNCC 1 cut(s) 942
CsiI ACCWGGT 2 cut(s) 471, 590
Csp6I GTAC 2 cut(s) 827, 1052
CviAII CATG 4 cut(s) 129, 245, 645, 819
CviQI GTAC 2 cut(s) 827, 1052
DdeI CTNAG 5 cut(s) 27, 60, 93, 555, 887
DpnI GATC 4 cut(s) 180, 371, 501, 738
DpnII GATC 4 cut(s) 178, 369, 499, 736
DraIII CACNNNGTG 1 cut(s) 475
EaeI YGGCCR 1 cut(s) 748
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco105I TACGTA 1 cut(s) 830
Eco130I CCWWGG 1 cut(s) 128
Eco31I GGTCTC 1 cut(s) 93
Eco32I GATATC 1 cut(s) 239
Eco47I GGWCC 1 cut(s) 942
Eco57I CTGAAG 2 cut(s) 89, 437
Eco81I CCTNAGG 1 cut(s) 60
Eco91I GGTNACC 1 cut(s) 910
EcoO109I RGGNCCY 1 cut(s) 942
EcoO65I GGTNACC 1 cut(s) 910
EcoRII CCWGG 4 cut(s) 336, 471, 590, 924
EcoRV GATATC 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 128
Esp3I CGTCTC 1 cut(s) 154
FaeI CATG 4 cut(s) 132, 248, 648, 822
FaqI GGGAC 2 cut(s) 49, 916
FatI CATG 4 cut(s) 128, 244, 644, 818
Fnu4HI GCNGC 5 cut(s) 24, 170, 219, 361, 623
Fsp4HI GCNGC 5 cut(s) 24, 170, 219, 361, 623
FspBI CTAG 3 cut(s) 119, 320, 786
FspI TGCGCA 1 cut(s) 861
GlaI GCGC 2 cut(s) 82, 861
GluI GCNGC 5 cut(s) 24, 170, 219, 361, 623
GsaI CCCAGC 1 cut(s) 204
GsuI CTGGAG 2 cut(s) 359, 947
HaeIII GGCC 1 cut(s) 750
HhaI GCGC 2 cut(s) 83, 862
Hin1II CATG 4 cut(s) 132, 248, 648, 822
Hin6I GCGC 2 cut(s) 81, 860
HinP1I GCGC 2 cut(s) 81, 860
HincII GTYRAC 1 cut(s) 606
HindII GTYRAC 1 cut(s) 606
HindIII AAGCTT 2 cut(s) 538, 693
HinfI GANTC 7 cut(s) 205, 323, 349, 523, 611, 754, 929
HpaI GTTAAC 1 cut(s) 606
HphI GGTGA 2 cut(s) 487, 922
Hpy166II GTNNAC 3 cut(s) 606, 827, 1054
Hpy188I TCNGA 9 cut(s) 69, 96, 376, 417, 504, 532, 558, 763, 1032
Hpy188III TCNNGA 8 cut(s) 176, 185, 296, 320, 566, 615, 878, 968
Hpy8I GTNNAC 3 cut(s) 606, 827, 1054
HpyAV CCTTC 3 cut(s) 168, 412, 761
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4IV ACGT 3 cut(s) 15, 829, 972
HpyCH4V TGCA 8 cut(s) 272, 486, 544, 622, 634, 792, 870, 1039
HpyF10VI GCNNNNNNNGC 3 cut(s) 250, 631, 897
HpyF3I CTNAG 5 cut(s) 27, 60, 93, 555, 887
HpySE526I ACGT 3 cut(s) 15, 829, 972
Hsp92II CATG 4 cut(s) 132, 248, 648, 822
HspAI GCGC 2 cut(s) 81, 860
KspAI GTTAAC 1 cut(s) 606
Kzo9I GATC 4 cut(s) 178, 369, 499, 736
LmnI GCTCC 2 cut(s) 42, 1002
Lsp1109I GCAGC 5 cut(s) 35, 156, 205, 347, 634
LweI GCATC 2 cut(s) 301, 779
MabI ACCWGGT 2 cut(s) 471, 590
MaeI CTAG 3 cut(s) 119, 320, 786
MaeII ACGT 3 cut(s) 15, 829, 972
MaeIII GTNAC 3 cut(s) 448, 910, 1007
MalI GATC 4 cut(s) 180, 371, 501, 738
MboI GATC 4 cut(s) 178, 369, 499, 736
MboII GAAGA 7 cut(s) 23, 82, 173, 296, 320, 379, 490
MfeI CAATTG 1 cut(s) 1022
MflI RGATCY 2 cut(s) 369, 736
MlsI TGGCCA 1 cut(s) 750
MluNI TGGCCA 1 cut(s) 750
MlyI GAGTC 1 cut(s) 938
MnlI CCTC 4 cut(s) 22, 25, 334, 809
Mox20I TGGCCA 1 cut(s) 750
MroXI GAANNNNTTC 2 cut(s) 54, 1017
MscI TGGCCA 1 cut(s) 750
MseI TTAA 5 cut(s) 354, 605, 660, 726, 993
MslI CAYNNNNRTG 1 cut(s) 839
Msp20I TGGCCA 1 cut(s) 750
MspA1I CMGCKG 1 cut(s) 26
MspR9I CCNGG 4 cut(s) 338, 473, 592, 926
MunI CAATTG 1 cut(s) 1022
MvaI CCWGG 4 cut(s) 338, 473, 592, 926
MwoI GCNNNNNNNGC 3 cut(s) 250, 631, 897
NcoI CCATGG 1 cut(s) 128
NdeII GATC 4 cut(s) 178, 369, 499, 736
NlaIII CATG 4 cut(s) 132, 248, 648, 822
NlaIV GGNNCC 1 cut(s) 1004
NmeAIII GCCGAG 1 cut(s) 258
NmuCI GTSAC 2 cut(s) 910, 1007
NsbI TGCGCA 1 cut(s) 861
NspI RCATGY 1 cut(s) 248
OliI CACNNNNGTG 1 cut(s) 839
PdmI GAANNNNTTC 2 cut(s) 54, 1017
PfeI GAWTC 6 cut(s) 205, 323, 349, 523, 611, 754
PkrI GCNGC 5 cut(s) 25, 171, 220, 362, 624
PleI GAGTC 1 cut(s) 937
PpsI GAGTC 1 cut(s) 937
Ppu21I YACGTR 1 cut(s) 830
PpuMI RGGWCCY 1 cut(s) 942
Psp5II RGGWCCY 1 cut(s) 942
Psp6I CCWGG 4 cut(s) 336, 471, 590, 924
PspEI GGTNACC 1 cut(s) 910
PspFI CCCAGC 1 cut(s) 200
PspGI CCWGG 4 cut(s) 336, 471, 590, 924
PspN4I GGNNCC 1 cut(s) 1004
PspPI GGNCC 1 cut(s) 942
PspPPI RGGWCCY 1 cut(s) 942
PstNI CAGNNNCTG 2 cut(s) 516, 614
PsuI RGATCY 2 cut(s) 369, 736
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 2 cut(s) 828, 1053
RsaNI GTAC 2 cut(s) 827, 1052
RseI CAYNNNNRTG 1 cut(s) 839
SaqAI TTAA 5 cut(s) 354, 605, 660, 726, 993
SatI GCNGC 5 cut(s) 24, 170, 219, 361, 623
Sau3AI GATC 4 cut(s) 178, 369, 499, 736
Sau96I GGNCC 1 cut(s) 942
SchI GAGTC 1 cut(s) 938
ScrFI CCNGG 4 cut(s) 338, 473, 592, 926
SexAI ACCWGGT 2 cut(s) 471, 590
SfaNI GCATC 2 cut(s) 301, 779
SinI GGWCC 1 cut(s) 942
SmiMI CAYNNNNRTG 1 cut(s) 839
SnaBI TACGTA 1 cut(s) 830
SspMI CTAG 3 cut(s) 119, 320, 786
StyD4I CCNGG 4 cut(s) 336, 471, 590, 924
StyI CCWWGG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 90
TaiI ACGT 3 cut(s) 18, 832, 975
TaqI TCGA 2 cut(s) 177, 677
TaqII GACCGA 1 cut(s) 929
TatI WGTACW 1 cut(s) 1051
TfiI GAWTC 6 cut(s) 205, 323, 349, 523, 611, 754
Tru1I TTAA 5 cut(s) 354, 605, 660, 726, 993
Tru9I TTAA 5 cut(s) 354, 605, 660, 726, 993
TscAI CASTG 5 cut(s) 406, 517, 691, 841, 1046
TseFI GTSAC 2 cut(s) 910, 1007
TseI GCWGC 5 cut(s) 23, 169, 218, 360, 622
Tsp45I GTSAC 2 cut(s) 910, 1007
TspDTI ATGAA 4 cut(s) 206, 216, 705, 780
TspGWI ACGGA 1 cut(s) 1015
TspRI CASTG 5 cut(s) 406, 517, 691, 841, 1046
VpaK11BI GGWCC 1 cut(s) 942
XapI RAATTY 4 cut(s) 266, 505, 728, 881
XbaI TCTAGA 1 cut(s) 319
XceI RCATGY 1 cut(s) 248
XmnI GAANNNNTTC 2 cut(s) 54, 1017
XspI CTAG 3 cut(s) 119, 320, 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.