Rmu_sc0004831.1_g000004

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004831.1
OG0011155
Physical Location & Seq
Reverse (-)
25588 .. 29152
3565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004831.1_g000004.1.cds

Sequence Viewer

Length: 1173 bp
atgccaaataattacagtcaaggaaaccttagcgaaggagaggatccggatccgataccctttgatttctcacaagaagaaaggggagtcaagtcaagtcggattcggggggtgatcaaaatggaagtagaaggaggtgaggaggtgacatggagcagagaaacagttcccaaggttgtgaagatagtgagcacaaggctccctcagagagacctcatctctctcttgctagtcagcccatggctcaacgctactctcatctcccccccttccctttggctgcttatcgattttcgtgaaatgaataatgctgggaatcgcctaatggctgctctgtcactgccgcgatatcggcatgtgaagcagataaaccttgaatttgcacaagatattgaagacaaacatcttgaactcataaggaacaagtgttttggttctcttcaaagccttgaagttttgaatctgaatagctgccagaagatttctgataagggagttcaagatataaccagtgcttgtgccaatctgaaggtcttttctatttattggaatgtgagggtgacagatataggtataacacacctggtgaaaaattgcaagtatatcattgatctgaatataagtggctgtaagaatcttttagacaaaagtttgcaactggttgctcagacttatccagaattagagttgctgaatctgacaaggtgtgtcaagttaacagattttggcttgcagcagatattgaacagttgctccagtctccagagtctcaacttatacgccctgtctagcttcactgatgaagcttacaagaggatatcacttctaacccatcttaaattcttggatctatgtggtgcccagaatctatcagatgaagggctttcttgtatagctagatgcaagggccttctgtctctcagtttgacatggtgtgtacgtgtcactgatgtgggggtcatagccattgcagagagttgcacctctctcgaatatctcagcttatttgggatagttggggtgaccgatgcatgcctggattccctctcaaggacctgttcgaacacaattactactcttgatgtgaatggatgtattggaattaagagacggagtcgtgatgaattgcttaaattgtttccaaagttgcggtgcttcaaagtgcacagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

390

Amino Acids

43.63

Weight (kDa)

7.42

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58530
fragaria_vesca FvH4_6g21620 FvH4_6g21620
malus_domestica MD12G1053200.v1.1 MD14G1051600.v1.1
prunus_persica Prupe.7G084400_v2.0.a1
pyrus_communis pycom12g04660 pycom14g04290 pycom14g04300
rosa_chinensis RchiOBHm_Chr3g0478871
rosa_laevigata RLG00000023619
rosa_multiflora Rmu_sc0004831.1_g000004 Rmu_sc0005751.1_g000013
rosa_roxburghii Rroxscaffold_6G00403010
rosa_rugosa Rorug03G0168800
rosa_samantha Rh3AG220400 Rh3BG252300 Rh3CG249100 Rh3DG245300
rosa_wichuraiana Rw3G019820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 857
AccII CGCG 1 cut(s) 346
AccIII TCCGGA 1 cut(s) 46
AciI CCGC 2 cut(s) 344, 1150
AclWI GGATC 5 cut(s) 38, 44, 51, 57, 855
AcsI RAATTY 2 cut(s) 377, 839
AcuI CTGAAG 1 cut(s) 548
AdeI CACNNNGTG 1 cut(s) 586
AfaI GTAC 1 cut(s) 939
AfiI CCNNNNNNNGG 1 cut(s) 1050
AflIII ACRYGT 1 cut(s) 940
AgsI TTSAA 9 cut(s) 377, 395, 410, 443, 452, 460, 500, 745, 1159
AjnI CCWGG 2 cut(s) 582, 1035
AleI CACNNNNGTG 1 cut(s) 950
AloI GAACNNNNNNTCC 2 cut(s) 737, 769
AluBI AGCT 6 cut(s) 471, 792, 806, 896, 1002, 1170
AluI AGCT 6 cut(s) 471, 792, 806, 896, 1002, 1170
Alw21I GWGCWC 2 cut(s) 194, 1167
Alw26I GTCTC 5 cut(s) 204, 764, 773, 921, 1102
Alw44I GTGCAC 1 cut(s) 1163
AlwI GGATC 5 cut(s) 38, 44, 51, 57, 855
Aor13HI TCCGGA 1 cut(s) 46
AoxI GGCC 1 cut(s) 907
ApaLI GTGCAC 1 cut(s) 1163
ApeKI GCWGC 4 cut(s) 280, 329, 471, 733
ApoI RAATTY 2 cut(s) 377, 839
Asp700I GAANNNNTTC 1 cut(s) 165
AspS9I GGNCC 2 cut(s) 907, 1053
AsuHPI GGTGA 6 cut(s) 124, 149, 157, 571, 598, 1033
AsuII TTCGAA 1 cut(s) 1061
AvaII GGWCC 1 cut(s) 1053
BaeGI GKGCMC 2 cut(s) 862, 1167
BamHI GGATCC 2 cut(s) 43, 49
BanI GGYRCC 1 cut(s) 857
BbsI GAAGAC 1 cut(s) 402
Bbv12I GWGCWC 2 cut(s) 194, 1167
BbvI GCAGC 4 cut(s) 267, 316, 458, 745
BccI CCATC 1 cut(s) 840
BcgI CGANNNNNNTGC 2 cut(s) 970, 1004
BciT130I CCWGG 2 cut(s) 584, 1037
BclI TGATCA 1 cut(s) 114
BcoDI GTCTC 5 cut(s) 204, 764, 773, 921, 1102
BfaI CTAG 3 cut(s) 230, 789, 897
BisI GCNGC 5 cut(s) 281, 330, 344, 472, 734
BlsI GCNGC 5 cut(s) 282, 331, 345, 473, 735
Bme1390I CCNGG 2 cut(s) 584, 1037
Bme18I GGWCC 1 cut(s) 1053
BmgT120I GGNCC 2 cut(s) 907, 1053
BmiI GGNNCC 4 cut(s) 45, 51, 200, 859
BmrFI CCNGG 2 cut(s) 584, 1037
BmsI GCATC 2 cut(s) 890, 1018
BpiI GAAGAC 1 cut(s) 402
BpmI CTGGAG 2 cut(s) 739, 746
Bpu10I CCTNAGC 1 cut(s) 29
Bpu14I TTCGAA 1 cut(s) 1061
BpuEI CTTGAG 1 cut(s) 1033
Bsa29I ATCGAT 1 cut(s) 288
BsaAI YACGTR 1 cut(s) 941
BsaBI GATNNNNATC 1 cut(s) 48
BsaI GGTCTC 1 cut(s) 204
BsaJI CCNNGG 2 cut(s) 171, 239
BsaWI WCCGGW 1 cut(s) 46
BsaXI ACNNNNNCTCC 2 cut(s) 737, 767
Bsc4I CCNNNNNNNGG 1 cut(s) 1050
Bse1I ACTGG 3 cut(s) 510, 663, 756
Bse3DI GCAATG 1 cut(s) 966
Bse8I GATNNNNATC 1 cut(s) 48
BseAI TCCGGA 1 cut(s) 46
BseBI CCWGG 2 cut(s) 584, 1037
BseCI ATCGAT 1 cut(s) 288
BseDI CCNNGG 2 cut(s) 171, 239
BseGI GGATG 1 cut(s) 1097
BseJI GATNNNNATC 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 1050
BseMI GCAATG 1 cut(s) 966
BseMII CTCAG 4 cut(s) 218, 680, 934, 1012
BseNI ACTGG 3 cut(s) 510, 663, 756
BseRI GAGGAG 1 cut(s) 155
BseSI GKGCMC 2 cut(s) 862, 1167
BseXI GCAGC 4 cut(s) 267, 316, 458, 745
BseYI CCCAGC 1 cut(s) 311
Bsh1236I CGCG 1 cut(s) 346
BshFI GGCC 1 cut(s) 909
BshNI GGYRCC 1 cut(s) 857
BshVI ATCGAT 1 cut(s) 288
BsiHKAI GWGCWC 2 cut(s) 194, 1167
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 1050
BsmAI GTCTC 5 cut(s) 204, 764, 773, 921, 1102
BsmBI CGTCTC 1 cut(s) 1102
BsnI GGCC 1 cut(s) 909
Bso31I GGTCTC 1 cut(s) 204
Bsp119I TTCGAA 1 cut(s) 1061
Bsp1286I GDGCHC 3 cut(s) 194, 862, 1167
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 5 cut(s) 43, 49, 114, 610, 847
Bsp19I CCATGG 1 cut(s) 239
BspACI CCGC 2 cut(s) 344, 1150
BspANI GGCC 1 cut(s) 909
BspCNI CTCAG 4 cut(s) 217, 679, 933, 1011
BspDI ATCGAT 1 cut(s) 288
BspEI TCCGGA 1 cut(s) 46
BspFNI CGCG 1 cut(s) 346
BspLI GGNNCC 4 cut(s) 45, 51, 200, 859
BspPI GGATC 5 cut(s) 38, 44, 51, 57, 855
BspT104I TTCGAA 1 cut(s) 1061
BspT107I GGYRCC 1 cut(s) 857
BspTNI GGTCTC 1 cut(s) 204
BsrDI GCAATG 1 cut(s) 966
BsrI ACTGG 3 cut(s) 510, 663, 756
BssECI CCNNGG 2 cut(s) 171, 239
BssMI GATC 5 cut(s) 43, 49, 114, 610, 847
BssT1I CCWWGG 2 cut(s) 171, 239
Bst2UI CCWGG 2 cut(s) 584, 1037
Bst4CI ACNGT 3 cut(s) 17, 166, 749
Bst6I CTCTTC 1 cut(s) 444
BstBAI YACGTR 1 cut(s) 941
BstBI TTCGAA 1 cut(s) 1061
BstC8I GCNNGC 2 cut(s) 731, 1033
BstDEI CTNAG 5 cut(s) 29, 204, 666, 920, 998
BstDSI CCRYGG 1 cut(s) 239
BstEII GGTNACC 1 cut(s) 1021
BstF5I GGATG 1 cut(s) 1097
BstFNI CGCG 1 cut(s) 346
BstKTI GATC 5 cut(s) 46, 52, 117, 613, 850
BstMAI GTCTC 5 cut(s) 204, 764, 773, 921, 1102
BstMBI GATC 5 cut(s) 43, 49, 114, 610, 847
BstMWI GCNNNNNNNGC 2 cut(s) 352, 361
BstNI CCWGG 2 cut(s) 584, 1037
BstNSI RCATGY 2 cut(s) 359, 1035
BstPI GGTNACC 1 cut(s) 1021
BstSCI CCNGG 2 cut(s) 582, 1035
BstSLI GKGCMC 2 cut(s) 862, 1167
BstUI CGCG 1 cut(s) 346
BstV1I GCAGC 4 cut(s) 267, 316, 458, 745
BstV2I GAAGAC 1 cut(s) 402
BstX2I RGATCY 3 cut(s) 43, 49, 847
BstYI RGATCY 3 cut(s) 43, 49, 847
Bsu15I ATCGAT 1 cut(s) 288
BsuRI GGCC 1 cut(s) 909
BsuTUI ATCGAT 1 cut(s) 288
BtgI CCRYGG 1 cut(s) 239
BtsCI GGATG 1 cut(s) 1097
BtsI GCAGTG 1 cut(s) 338
BtsIMutI CAGTG 4 cut(s) 338, 517, 795, 945
Cac8I GCNNGC 2 cut(s) 731, 1033
Cfr13I GGNCC 2 cut(s) 907, 1053
ClaI ATCGAT 1 cut(s) 288
CsiI ACCWGGT 1 cut(s) 582
Csp6I GTAC 1 cut(s) 938
CviAII CATG 5 cut(s) 150, 240, 356, 930, 1032
CviQI GTAC 1 cut(s) 938
DdeI CTNAG 5 cut(s) 29, 204, 666, 920, 998
DpnI GATC 5 cut(s) 45, 51, 116, 612, 849
DpnII GATC 5 cut(s) 43, 49, 114, 610, 847
DraIII CACNNNGTG 1 cut(s) 586
Eam1104I CTCTTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 444
Eco130I CCWWGG 2 cut(s) 171, 239
Eco31I GGTCTC 1 cut(s) 204
Eco32I GATATC 2 cut(s) 350, 819
Eco47I GGWCC 1 cut(s) 1053
Eco57I CTGAAG 1 cut(s) 548
Eco91I GGTNACC 1 cut(s) 1021
EcoO109I RGGNCCY 2 cut(s) 907, 1053
EcoO65I GGTNACC 1 cut(s) 1021
EcoRII CCWGG 2 cut(s) 582, 1035
EcoRV GATATC 2 cut(s) 350, 819
EcoT14I CCWWGG 2 cut(s) 171, 239
EcoT22I ATGCAT 1 cut(s) 1033
ErhI CCWWGG 2 cut(s) 171, 239
Esp3I CGTCTC 1 cut(s) 1102
FaeI CATG 5 cut(s) 153, 243, 359, 933, 1035
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FatI CATG 5 cut(s) 149, 239, 355, 929, 1031
FbaI TGATCA 1 cut(s) 114
Fnu4HI GCNGC 5 cut(s) 281, 330, 344, 472, 734
FokI GGATG 1 cut(s) 1104
Fsp4HI GCNGC 5 cut(s) 281, 330, 344, 472, 734
FspBI CTAG 3 cut(s) 230, 789, 897
GluI GCNGC 5 cut(s) 281, 330, 344, 472, 734
GsaI CCCAGC 1 cut(s) 315
GsuI CTGGAG 2 cut(s) 739, 746
HaeIII GGCC 1 cut(s) 909
HapII CCGG 1 cut(s) 47
Hin1II CATG 5 cut(s) 153, 243, 359, 933, 1035
HincII GTYRAC 1 cut(s) 717
HindII GTYRAC 1 cut(s) 717
HindIII AAGCTT 1 cut(s) 804
HpaI GTTAAC 1 cut(s) 717
HpaII CCGG 1 cut(s) 47
HphI GGTGA 6 cut(s) 124, 149, 157, 571, 598, 1033
Hpy166II GTNNAC 3 cut(s) 717, 938, 1165
Hpy188III TCNNGA 9 cut(s) 47, 296, 407, 500, 677, 763, 989, 1079, 1118
Hpy8I GTNNAC 3 cut(s) 717, 938, 1165
HpyAV CCTTC 6 cut(s) 29, 125, 279, 523, 872, 920
HpyCH4III ACNGT 3 cut(s) 17, 166, 749
HpyCH4IV ACGT 1 cut(s) 940
HpyCH4V TGCA 9 cut(s) 383, 597, 655, 733, 903, 971, 981, 1031, 1165
HpyF10VI GCNNNNNNNGC 2 cut(s) 352, 361
HpyF3I CTNAG 5 cut(s) 29, 204, 666, 920, 998
HpySE526I ACGT 1 cut(s) 940
Hsp92II CATG 5 cut(s) 153, 243, 359, 933, 1035
Kpn2I TCCGGA 1 cut(s) 46
Ksp22I TGATCA 1 cut(s) 114
KspAI GTTAAC 1 cut(s) 717
Kzo9I GATC 5 cut(s) 43, 49, 114, 610, 847
LmnI GCTCC 3 cut(s) 153, 204, 758
Lsp1109I GCAGC 4 cut(s) 267, 316, 458, 745
LweI GCATC 2 cut(s) 890, 1018
MabI ACCWGGT 1 cut(s) 582
MaeI CTAG 3 cut(s) 230, 789, 897
MaeII ACGT 1 cut(s) 940
MaeIII GTNAC 5 cut(s) 145, 336, 559, 943, 1021
MalI GATC 5 cut(s) 45, 51, 116, 612, 849
MboI GATC 5 cut(s) 43, 49, 114, 610, 847
MboII GAAGA 5 cut(s) 89, 193, 407, 431, 490
MflI RGATCY 3 cut(s) 43, 49, 847
MhlI GDGCHC 3 cut(s) 194, 862, 1167
MluCI AATT 9 cut(s) 10, 377, 592, 680, 839, 1068, 1101, 1124, 1133
MlyI GAGTC 3 cut(s) 96, 775, 1123
MmeI TCCRAC 1 cut(s) 80
Mph1103I ATGCAT 1 cut(s) 1033
MroI TCCGGA 1 cut(s) 46
MroXI GAANNNNTTC 1 cut(s) 165
MseI TTAA 4 cut(s) 716, 837, 1104, 1131
MslI CAYNNNNRTG 1 cut(s) 950
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 2 cut(s) 584, 1037
MvaI CCWGG 2 cut(s) 584, 1037
MvnI CGCG 1 cut(s) 346
MwoI GCNNNNNNNGC 2 cut(s) 352, 361
NcoI CCATGG 1 cut(s) 239
NdeII GATC 5 cut(s) 43, 49, 114, 610, 847
NlaIII CATG 5 cut(s) 153, 243, 359, 933, 1035
NlaIV GGNNCC 4 cut(s) 45, 51, 200, 859
NmuCI GTSAC 5 cut(s) 145, 336, 559, 943, 1021
NsiI ATGCAT 1 cut(s) 1033
NspI RCATGY 2 cut(s) 359, 1035
NspV TTCGAA 1 cut(s) 1061
OliI CACNNNNGTG 1 cut(s) 950
PaeI GCATGC 1 cut(s) 1035
PdmI GAANNNNTTC 1 cut(s) 165
PfeI GAWTC 7 cut(s) 103, 316, 460, 634, 694, 865, 1040
PflFI GACNNNGTC 1 cut(s) 1113
PkrI GCNGC 5 cut(s) 282, 331, 345, 473, 735
PleI GAGTC 3 cut(s) 95, 774, 1122
PpsI GAGTC 3 cut(s) 95, 774, 1122
Ppu21I YACGTR 1 cut(s) 941
PpuMI RGGWCCY 1 cut(s) 1053
Psp5II RGGWCCY 1 cut(s) 1053
Psp6I CCWGG 2 cut(s) 582, 1035
PspEI GGTNACC 1 cut(s) 1021
PspFI CCCAGC 1 cut(s) 311
PspGI CCWGG 2 cut(s) 582, 1035
PspN4I GGNNCC 4 cut(s) 45, 51, 200, 859
PspPI GGNCC 2 cut(s) 907, 1053
PspPPI RGGWCCY 1 cut(s) 1053
PsuI RGATCY 3 cut(s) 43, 49, 847
PsyI GACNNNGTC 1 cut(s) 1113
RsaI GTAC 1 cut(s) 939
RsaNI GTAC 1 cut(s) 938
RseI CAYNNNNRTG 1 cut(s) 950
SaqAI TTAA 4 cut(s) 716, 837, 1104, 1131
SatI GCNGC 5 cut(s) 281, 330, 344, 472, 734
Sau3AI GATC 5 cut(s) 43, 49, 114, 610, 847
Sau96I GGNCC 2 cut(s) 907, 1053
SchI GAGTC 3 cut(s) 96, 775, 1123
ScrFI CCNGG 2 cut(s) 584, 1037
SduI GDGCHC 3 cut(s) 194, 862, 1167
SexAI ACCWGGT 1 cut(s) 582
SfaNI GCATC 2 cut(s) 890, 1018
SfuI TTCGAA 1 cut(s) 1061
SinI GGWCC 1 cut(s) 1053
SmiMI CAYNNNNRTG 1 cut(s) 950
SmlI CTYRAG 1 cut(s) 1048
SmoI CTYRAG 1 cut(s) 1048
SphI GCATGC 1 cut(s) 1035
Sse9I AATT 9 cut(s) 10, 377, 592, 680, 839, 1068, 1101, 1124, 1133
SsiI CCGC 2 cut(s) 344, 1150
SspMI CTAG 3 cut(s) 230, 789, 897
StyD4I CCNGG 2 cut(s) 582, 1035
StyI CCWWGG 2 cut(s) 171, 239
TaaI ACNGT 3 cut(s) 17, 166, 749
TaiI ACGT 1 cut(s) 943
TaqI TCGA 3 cut(s) 288, 990, 1061
TaqII GACCGA 1 cut(s) 1040
TasI AATT 9 cut(s) 10, 377, 592, 680, 839, 1068, 1101, 1124, 1133
TauI GCSGC 1 cut(s) 346
TfiI GAWTC 7 cut(s) 103, 316, 460, 634, 694, 865, 1040
Tru1I TTAA 4 cut(s) 716, 837, 1104, 1131
Tru9I TTAA 4 cut(s) 716, 837, 1104, 1131
TscAI CASTG 4 cut(s) 345, 517, 802, 952
TseFI GTSAC 5 cut(s) 145, 336, 559, 943, 1021
TseI GCWGC 4 cut(s) 280, 329, 471, 733
Tsp45I GTSAC 5 cut(s) 145, 336, 559, 943, 1021
TspDTI ATGAA 4 cut(s) 317, 816, 891, 1137
TspGWI ACGGA 1 cut(s) 1126
TspRI CASTG 4 cut(s) 345, 517, 802, 952
Tth111I GACNNNGTC 1 cut(s) 1113
VneI GTGCAC 1 cut(s) 1163
VpaK11BI GGWCC 1 cut(s) 1053
XapI RAATTY 2 cut(s) 377, 839
XceI RCATGY 2 cut(s) 359, 1035
XmnI GAANNNNTTC 1 cut(s) 165
XspI CTAG 3 cut(s) 230, 789, 897
Zsp2I ATGCAT 1 cut(s) 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.