Rh3CG249100

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0011155
Physical Location & Seq
Forward (+)
24121399 .. 24125493
4095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG249100.1

Sequence Viewer

Length: 816 bp
ATGGAAGTAGAAGGAGGTGAGGAGGTGACATGGAGCAGAGAAACAGTTCCCAAGGTTGTGAAGATAGTGAGCACAAGACTCCCTCAGAGAGACCTCATCTCTCTCTTGCTAGTCAGCCCATGGCTCAACGCTACTCTCATCTCCCACCCTTCCCTTTGGCTGCTTATCGATTTTCGTGAAATGAATAATGCTGGGAATCGCCTATTAGCTGCTCTGTCACTGCCGCGATATCGGCATGTGAAGCAGATAAACCTTGAATTTGCACAAGATATTGAAGACAAACATCTTGAACTCATAAGGAACAAGTGTTTTGGTTCTCTTCAAAGCCTTCAAGTTTTGAATCTGAATAGCTGCCAGAAGATTTCTGATAAGGGAGTTCAAGATATAACCAGTGCTTGTGCCAATCTGAAGGTCTTTTCTATTTATTGGAATGTGAGGGTGACAGATATAGGTATAACACACCTGGTGAAAAATTGCAAGTATATCATTGATCTGAATATAAGTGGCTGTAAGAATCTTTTAGACAAAAGTTTGCAACTGGTTGCTCAGACTTATCCAGAATTAGAGTTGCTGAATCTGACAAGGTGTGTCAAGTTAACAGATTTTGGCTTGCAGCAGATATTGAACAGTTGCTCCAGTCTCCAGAGTCTCAACTTATACGCCCTGTCTAGCTTCACTGATGAAGCTTACAAGAGGATATCACTTCTAACCCATCTTAAATTCTTGGATCTATGTGGTGCCCAGAATCTATCAGATGAAGGGCTTTCTTGTATAGCTAGATGCAAGGGCCTTCTGTCTCTCAGTTTGACATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

271

Amino Acids

30.57

Weight (kDa)

8.01

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 146 - 268 6.3e-10 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58530
fragaria_vesca FvH4_6g21620 FvH4_6g21620
malus_domestica MD12G1053200.v1.1 MD14G1051600.v1.1
prunus_persica Prupe.7G084400_v2.0.a1
pyrus_communis pycom12g04660 pycom14g04290 pycom14g04300
rosa_chinensis RchiOBHm_Chr3g0478871
rosa_laevigata RLG00000023619
rosa_multiflora Rmu_sc0004831.1_g000004 Rmu_sc0005751.1_g000013
rosa_roxburghii Rroxscaffold_6G00403010
rosa_rugosa Rorug03G0168800
rosa_samantha Rh3AG220400 Rh3BG252300 Rh3CG249100 Rh3DG245300
rosa_wichuraiana Rw3G019820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 737
AccII CGCG 1 cut(s) 226
AciI CCGC 1 cut(s) 224
AclWI GGATC 1 cut(s) 735
AcsI RAATTY 2 cut(s) 257, 719
AcuI CTGAAG 1 cut(s) 428
AdeI CACNNNGTG 1 cut(s) 466
AgsI TTSAA 8 cut(s) 257, 275, 290, 323, 332, 340, 380, 625
AjnI CCWGG 1 cut(s) 462
AloI GAACNNNNNNTCC 2 cut(s) 617, 649
AluBI AGCT 5 cut(s) 209, 351, 672, 686, 776
AluI AGCT 5 cut(s) 209, 351, 672, 686, 776
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 4 cut(s) 84, 644, 653, 801
AlwI GGATC 1 cut(s) 735
AoxI GGCC 1 cut(s) 787
ApeKI GCWGC 4 cut(s) 160, 209, 351, 613
ApoI RAATTY 2 cut(s) 257, 719
Asp700I GAANNNNTTC 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 787
AsuHPI GGTGA 4 cut(s) 29, 37, 451, 478
BaeGI GKGCMC 1 cut(s) 742
BanI GGYRCC 1 cut(s) 737
BbsI GAAGAC 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 74
BbvI GCAGC 4 cut(s) 147, 196, 338, 625
BccI CCATC 1 cut(s) 720
BciT130I CCWGG 1 cut(s) 464
BcoDI GTCTC 4 cut(s) 84, 644, 653, 801
BfaI CTAG 3 cut(s) 110, 669, 777
BisI GCNGC 5 cut(s) 161, 210, 224, 352, 614
BlsI GCNGC 5 cut(s) 162, 211, 225, 353, 615
Bme1390I CCNGG 1 cut(s) 464
BmgT120I GGNCC 1 cut(s) 787
BmiI GGNNCC 1 cut(s) 739
BmrFI CCNGG 1 cut(s) 464
BmsI GCATC 1 cut(s) 770
BpiI GAAGAC 1 cut(s) 282
BpmI CTGGAG 2 cut(s) 619, 626
Bsa29I ATCGAT 1 cut(s) 168
BsaI GGTCTC 1 cut(s) 84
BsaJI CCNNGG 2 cut(s) 51, 119
BsaXI ACNNNNNCTCC 2 cut(s) 617, 647
Bse1I ACTGG 3 cut(s) 390, 543, 636
BseBI CCWGG 1 cut(s) 464
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 51, 119
BseMII CTCAG 3 cut(s) 98, 560, 814
BseNI ACTGG 3 cut(s) 390, 543, 636
BseRI GAGGAG 1 cut(s) 35
BseSI GKGCMC 1 cut(s) 742
BseXI GCAGC 4 cut(s) 147, 196, 338, 625
BseYI CCCAGC 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 226
BshFI GGCC 1 cut(s) 789
BshNI GGYRCC 1 cut(s) 737
BshVI ATCGAT 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 74
BsmAI GTCTC 4 cut(s) 84, 644, 653, 801
BsnI GGCC 1 cut(s) 789
Bso31I GGTCTC 1 cut(s) 84
Bsp1286I GDGCHC 2 cut(s) 74, 742
Bsp143I GATC 2 cut(s) 490, 727
Bsp19I CCATGG 1 cut(s) 119
BspACI CCGC 1 cut(s) 224
BspANI GGCC 1 cut(s) 789
BspCNI CTCAG 3 cut(s) 97, 559, 813
BspDI ATCGAT 1 cut(s) 168
BspFNI CGCG 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 739
BspPI GGATC 1 cut(s) 735
BspT107I GGYRCC 1 cut(s) 737
BspTNI GGTCTC 1 cut(s) 84
BsrI ACTGG 3 cut(s) 390, 543, 636
BssECI CCNNGG 2 cut(s) 51, 119
BssMI GATC 2 cut(s) 490, 727
BssT1I CCWWGG 2 cut(s) 51, 119
Bst2UI CCWGG 1 cut(s) 464
Bst4CI ACNGT 2 cut(s) 46, 629
Bst6I CTCTTC 1 cut(s) 324
BstC8I GCNNGC 1 cut(s) 611
BstDEI CTNAG 3 cut(s) 84, 546, 800
BstDSI CCRYGG 1 cut(s) 119
BstFNI CGCG 1 cut(s) 226
BstKTI GATC 2 cut(s) 493, 730
BstMAI GTCTC 4 cut(s) 84, 644, 653, 801
BstMBI GATC 2 cut(s) 490, 727
BstMWI GCNNNNNNNGC 2 cut(s) 232, 241
BstNI CCWGG 1 cut(s) 464
BstNSI RCATGY 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 462
BstSLI GKGCMC 1 cut(s) 742
BstUI CGCG 1 cut(s) 226
BstV1I GCAGC 4 cut(s) 147, 196, 338, 625
BstV2I GAAGAC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 727
BstYI RGATCY 1 cut(s) 727
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 1 cut(s) 789
BsuTUI ATCGAT 1 cut(s) 168
BtgI CCRYGG 1 cut(s) 119
BtsI GCAGTG 1 cut(s) 218
BtsIMutI CAGTG 3 cut(s) 218, 397, 675
Cac8I GCNNGC 1 cut(s) 611
Cfr13I GGNCC 1 cut(s) 787
ClaI ATCGAT 1 cut(s) 168
CsiI ACCWGGT 1 cut(s) 462
CviAII CATG 4 cut(s) 30, 120, 236, 810
DdeI CTNAG 3 cut(s) 84, 546, 800
DpnI GATC 2 cut(s) 492, 729
DpnII GATC 2 cut(s) 490, 727
DraIII CACNNNGTG 1 cut(s) 466
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Eco130I CCWWGG 2 cut(s) 51, 119
Eco31I GGTCTC 1 cut(s) 84
Eco32I GATATC 2 cut(s) 230, 699
Eco57I CTGAAG 1 cut(s) 428
EcoO109I RGGNCCY 1 cut(s) 787
EcoRII CCWGG 1 cut(s) 462
EcoRV GATATC 2 cut(s) 230, 699
EcoT14I CCWWGG 2 cut(s) 51, 119
ErhI CCWWGG 2 cut(s) 51, 119
FaeI CATG 4 cut(s) 33, 123, 239, 813
FatI CATG 4 cut(s) 29, 119, 235, 809
Fnu4HI GCNGC 5 cut(s) 161, 210, 224, 352, 614
Fsp4HI GCNGC 5 cut(s) 161, 210, 224, 352, 614
FspBI CTAG 3 cut(s) 110, 669, 777
GluI GCNGC 5 cut(s) 161, 210, 224, 352, 614
GsaI CCCAGC 1 cut(s) 195
GsuI CTGGAG 2 cut(s) 619, 626
HaeIII GGCC 1 cut(s) 789
Hin1II CATG 4 cut(s) 33, 123, 239, 813
HincII GTYRAC 1 cut(s) 597
HindII GTYRAC 1 cut(s) 597
HindIII AAGCTT 1 cut(s) 684
HinfI GANTC 7 cut(s) 78, 196, 340, 514, 574, 646, 745
HpaI GTTAAC 1 cut(s) 597
HphI GGTGA 4 cut(s) 29, 37, 451, 478
Hpy166II GTNNAC 1 cut(s) 597
Hpy188I TCNGA 8 cut(s) 87, 345, 367, 408, 495, 549, 579, 754
Hpy188III TCNNGA 5 cut(s) 176, 287, 380, 557, 643
Hpy8I GTNNAC 1 cut(s) 597
HpyAV CCTTC 6 cut(s) 5, 159, 338, 403, 752, 800
HpyCH4III ACNGT 2 cut(s) 46, 629
HpyCH4V TGCA 5 cut(s) 263, 477, 535, 613, 783
HpyF10VI GCNNNNNNNGC 2 cut(s) 232, 241
HpyF3I CTNAG 3 cut(s) 84, 546, 800
Hsp92II CATG 4 cut(s) 33, 123, 239, 813
KspAI GTTAAC 1 cut(s) 597
Kzo9I GATC 2 cut(s) 490, 727
LmnI GCTCC 2 cut(s) 33, 638
Lsp1109I GCAGC 4 cut(s) 147, 196, 338, 625
LweI GCATC 1 cut(s) 770
MabI ACCWGGT 1 cut(s) 462
MaeI CTAG 3 cut(s) 110, 669, 777
MaeIII GTNAC 3 cut(s) 25, 216, 439
MalI GATC 2 cut(s) 492, 729
MboI GATC 2 cut(s) 490, 727
MboII GAAGA 4 cut(s) 73, 287, 311, 370
MflI RGATCY 1 cut(s) 727
MhlI GDGCHC 2 cut(s) 74, 742
MluCI AATT 4 cut(s) 257, 472, 560, 719
MlyI GAGTC 2 cut(s) 72, 655
MnlI CCTC 7 cut(s) 8, 13, 16, 93, 104, 429, 687
MroXI GAANNNNTTC 1 cut(s) 45
MseI TTAA 2 cut(s) 596, 717
MspR9I CCNGG 1 cut(s) 464
MvaI CCWGG 1 cut(s) 464
MvnI CGCG 1 cut(s) 226
MwoI GCNNNNNNNGC 2 cut(s) 232, 241
NcoI CCATGG 1 cut(s) 119
NdeII GATC 2 cut(s) 490, 727
NlaIII CATG 4 cut(s) 33, 123, 239, 813
NlaIV GGNNCC 1 cut(s) 739
NmuCI GTSAC 3 cut(s) 25, 216, 439
NspI RCATGY 1 cut(s) 239
PdmI GAANNNNTTC 1 cut(s) 45
PfeI GAWTC 5 cut(s) 196, 340, 514, 574, 745
PkrI GCNGC 5 cut(s) 162, 211, 225, 353, 615
PleI GAGTC 2 cut(s) 72, 654
PpsI GAGTC 2 cut(s) 72, 654
Psp6I CCWGG 1 cut(s) 462
PspFI CCCAGC 1 cut(s) 191
PspGI CCWGG 1 cut(s) 462
PspN4I GGNNCC 1 cut(s) 739
PspPI GGNCC 1 cut(s) 787
PsuI RGATCY 1 cut(s) 727
SaqAI TTAA 2 cut(s) 596, 717
SatI GCNGC 5 cut(s) 161, 210, 224, 352, 614
Sau3AI GATC 2 cut(s) 490, 727
Sau96I GGNCC 1 cut(s) 787
SchI GAGTC 2 cut(s) 72, 655
ScrFI CCNGG 1 cut(s) 464
SduI GDGCHC 2 cut(s) 74, 742
SexAI ACCWGGT 1 cut(s) 462
SfaNI GCATC 1 cut(s) 770
Sse9I AATT 4 cut(s) 257, 472, 560, 719
SsiI CCGC 1 cut(s) 224
SspMI CTAG 3 cut(s) 110, 669, 777
StyD4I CCNGG 1 cut(s) 462
StyI CCWWGG 2 cut(s) 51, 119
TaaI ACNGT 2 cut(s) 46, 629
TaqI TCGA 1 cut(s) 168
TasI AATT 4 cut(s) 257, 472, 560, 719
TauI GCSGC 1 cut(s) 226
TfiI GAWTC 5 cut(s) 196, 340, 514, 574, 745
Tru1I TTAA 2 cut(s) 596, 717
Tru9I TTAA 2 cut(s) 596, 717
TscAI CASTG 3 cut(s) 225, 397, 682
TseFI GTSAC 3 cut(s) 25, 216, 439
TseI GCWGC 4 cut(s) 160, 209, 351, 613
Tsp45I GTSAC 3 cut(s) 25, 216, 439
TspDTI ATGAA 3 cut(s) 197, 696, 771
TspRI CASTG 3 cut(s) 225, 397, 682
XapI RAATTY 2 cut(s) 257, 719
XceI RCATGY 1 cut(s) 239
XmnI GAANNNNTTC 1 cut(s) 45
XspI CTAG 3 cut(s) 110, 669, 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.