Rh3BG252300

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0011155
Physical Location & Seq
Forward (+)
24341158 .. 24344597
3440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG252300.1

Sequence Viewer

Length: 846 bp
ATGGAAGTAGAAGGAGGTGAGGAGGTGACATGGAGCAGAGAAACAGTTCCCAAGGTTGTGAAGATAGTGAGCACAAGACTCCCTCAGAGAGACCTCATCTCTCTCTTGCTAGTCAGCCCATGGCTCAACGCTACTCTCATCTCCCACCCTTCCCTTTGGCTGCTTATCGATTTTCGTGAAATGAATAATGCTGGGAATCGCCTAATAGCTGCTCTGTCACTGCCGCGATATCGGCATGTGAAGCAGATAAACCTTGAATTTGCACAAGATATTGAAGACAAACATCTTGAACTCATAAAGAACAAGTGTTTTGGTTCTCTTCAAAACCTTGAAGTTTTGAATCTGAATAGCTGCCAGAAGATTTCTGATAAGGGAGTTCAAGATATAACCAGTGCTTGTGCCAATCTGAAGATATTGAACAGTTGCTCCAGTCTCCAGAGTCTCAACTTATACGCCCTGTCTAGCTTCACTGATGAAGCTTACAAGAGGATATCACTTCTAACCCATCTTAAATTCTTGGATCTATGTGGTGCCCAGAATCTATCAGATGAAGGGCTTTCTTGTATAGCTAGATGCAAGGGCCTTCTGTCTCTCAGTTTGACATGGTGTGTACGTGTCACTGATGTGGGGGTCATAGCCATTGCAGAGAGTTGCACCTCTCTCGAATATCTCAGCTTGTTTGGGATAGTTGGGGTGACCGATGCATGCCTGGATTCCCTCTCAAGGACCTGTTCGAACACAATTACTACTCTTGATGTGAATGGATGTATTGGAATTAAGAGACGGAGTCGTGATGAATTGCTTAAATTGTTTCCAAAGTTGCGGTGCTTCAAAGTGCACAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

281

Amino Acids

31.26

Weight (kDa)

7.92

Isoelectric Point (pI)

38.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 138 - 213 1.2e-07 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58530
fragaria_vesca FvH4_6g21620 FvH4_6g21620
malus_domestica MD12G1053200.v1.1 MD14G1051600.v1.1
prunus_persica Prupe.7G084400_v2.0.a1
pyrus_communis pycom12g04660 pycom14g04290 pycom14g04300
rosa_chinensis RchiOBHm_Chr3g0478871
rosa_laevigata RLG00000023619
rosa_multiflora Rmu_sc0004831.1_g000004 Rmu_sc0005751.1_g000013
rosa_roxburghii Rroxscaffold_6G00403010
rosa_rugosa Rorug03G0168800
rosa_samantha Rh3AG220400 Rh3BG252300 Rh3CG249100 Rh3DG245300
rosa_wichuraiana Rw3G019820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 530
AccII CGCG 1 cut(s) 226
AciI CCGC 2 cut(s) 224, 823
AclWI GGATC 1 cut(s) 528
AcsI RAATTY 2 cut(s) 257, 512
AcuI CTGAAG 1 cut(s) 428
AfaI GTAC 1 cut(s) 612
AfiI CCNNNNNNNGG 1 cut(s) 723
AflIII ACRYGT 1 cut(s) 613
AgsI TTSAA 9 cut(s) 257, 275, 290, 323, 332, 340, 380, 418, 832
AjnI CCWGG 1 cut(s) 708
AleI CACNNNNGTG 1 cut(s) 623
AloI GAACNNNNNNTCC 2 cut(s) 410, 442
AluBI AGCT 7 cut(s) 209, 351, 465, 479, 569, 675, 843
AluI AGCT 7 cut(s) 209, 351, 465, 479, 569, 675, 843
Alw21I GWGCWC 2 cut(s) 74, 840
Alw26I GTCTC 5 cut(s) 84, 437, 446, 594, 775
Alw44I GTGCAC 1 cut(s) 836
AlwI GGATC 1 cut(s) 528
AoxI GGCC 1 cut(s) 580
ApaLI GTGCAC 1 cut(s) 836
ApeKI GCWGC 3 cut(s) 160, 209, 351
ApoI RAATTY 2 cut(s) 257, 512
Asp700I GAANNNNTTC 1 cut(s) 45
AspS9I GGNCC 2 cut(s) 580, 726
AsuHPI GGTGA 3 cut(s) 29, 37, 706
AsuII TTCGAA 1 cut(s) 734
AvaII GGWCC 1 cut(s) 726
BaeGI GKGCMC 2 cut(s) 535, 840
BanI GGYRCC 1 cut(s) 530
BbsI GAAGAC 1 cut(s) 282
Bbv12I GWGCWC 2 cut(s) 74, 840
BbvI GCAGC 3 cut(s) 147, 196, 338
BccI CCATC 1 cut(s) 513
BcgI CGANNNNNNTGC 2 cut(s) 643, 677
BciT130I CCWGG 1 cut(s) 710
BcoDI GTCTC 5 cut(s) 84, 437, 446, 594, 775
BfaI CTAG 3 cut(s) 110, 462, 570
BisI GCNGC 4 cut(s) 161, 210, 224, 352
BlsI GCNGC 4 cut(s) 162, 211, 225, 353
Bme1390I CCNGG 1 cut(s) 710
Bme18I GGWCC 1 cut(s) 726
BmgT120I GGNCC 2 cut(s) 580, 726
BmiI GGNNCC 1 cut(s) 532
BmrFI CCNGG 1 cut(s) 710
BmsI GCATC 2 cut(s) 563, 691
BpiI GAAGAC 1 cut(s) 282
BpmI CTGGAG 2 cut(s) 412, 419
Bpu14I TTCGAA 1 cut(s) 734
BpuEI CTTGAG 1 cut(s) 706
Bsa29I ATCGAT 1 cut(s) 168
BsaAI YACGTR 1 cut(s) 614
BsaI GGTCTC 1 cut(s) 84
BsaJI CCNNGG 2 cut(s) 51, 119
BsaXI ACNNNNNCTCC 2 cut(s) 410, 440
Bsc4I CCNNNNNNNGG 1 cut(s) 723
Bse1I ACTGG 2 cut(s) 390, 429
Bse3DI GCAATG 1 cut(s) 639
BseBI CCWGG 1 cut(s) 710
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 51, 119
BseGI GGATG 1 cut(s) 770
BseLI CCNNNNNNNGG 1 cut(s) 723
BseMI GCAATG 1 cut(s) 639
BseMII CTCAG 3 cut(s) 98, 607, 685
BseNI ACTGG 2 cut(s) 390, 429
BseRI GAGGAG 1 cut(s) 35
BseSI GKGCMC 2 cut(s) 535, 840
BseXI GCAGC 3 cut(s) 147, 196, 338
BseYI CCCAGC 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 226
BshFI GGCC 1 cut(s) 582
BshNI GGYRCC 1 cut(s) 530
BshVI ATCGAT 1 cut(s) 168
BsiHKAI GWGCWC 2 cut(s) 74, 840
BslI CCNNNNNNNGG 1 cut(s) 723
BsmAI GTCTC 5 cut(s) 84, 437, 446, 594, 775
BsmBI CGTCTC 1 cut(s) 775
BsnI GGCC 1 cut(s) 582
Bso31I GGTCTC 1 cut(s) 84
Bsp119I TTCGAA 1 cut(s) 734
Bsp1286I GDGCHC 3 cut(s) 74, 535, 840
Bsp143I GATC 1 cut(s) 520
Bsp19I CCATGG 1 cut(s) 119
BspACI CCGC 2 cut(s) 224, 823
BspANI GGCC 1 cut(s) 582
BspCNI CTCAG 3 cut(s) 97, 606, 684
BspDI ATCGAT 1 cut(s) 168
BspFNI CGCG 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 532
BspPI GGATC 1 cut(s) 528
BspT104I TTCGAA 1 cut(s) 734
BspT107I GGYRCC 1 cut(s) 530
BspTNI GGTCTC 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 639
BsrI ACTGG 2 cut(s) 390, 429
BssECI CCNNGG 2 cut(s) 51, 119
BssMI GATC 1 cut(s) 520
BssT1I CCWWGG 2 cut(s) 51, 119
Bst2UI CCWGG 1 cut(s) 710
Bst4CI ACNGT 2 cut(s) 46, 422
Bst6I CTCTTC 1 cut(s) 324
BstBAI YACGTR 1 cut(s) 614
BstBI TTCGAA 1 cut(s) 734
BstC8I GCNNGC 1 cut(s) 706
BstDEI CTNAG 3 cut(s) 84, 593, 671
BstDSI CCRYGG 1 cut(s) 119
BstEII GGTNACC 1 cut(s) 694
BstF5I GGATG 1 cut(s) 770
BstFNI CGCG 1 cut(s) 226
BstKTI GATC 1 cut(s) 523
BstMAI GTCTC 5 cut(s) 84, 437, 446, 594, 775
BstMBI GATC 1 cut(s) 520
BstMWI GCNNNNNNNGC 2 cut(s) 232, 241
BstNI CCWGG 1 cut(s) 710
BstNSI RCATGY 2 cut(s) 239, 708
BstPI GGTNACC 1 cut(s) 694
BstSCI CCNGG 1 cut(s) 708
BstSLI GKGCMC 2 cut(s) 535, 840
BstUI CGCG 1 cut(s) 226
BstV1I GCAGC 3 cut(s) 147, 196, 338
BstV2I GAAGAC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 520
BstYI RGATCY 1 cut(s) 520
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 1 cut(s) 582
BsuTUI ATCGAT 1 cut(s) 168
BtgI CCRYGG 1 cut(s) 119
BtsCI GGATG 1 cut(s) 770
BtsI GCAGTG 1 cut(s) 218
BtsIMutI CAGTG 4 cut(s) 218, 397, 468, 618
Cac8I GCNNGC 1 cut(s) 706
Cfr13I GGNCC 2 cut(s) 580, 726
ClaI ATCGAT 1 cut(s) 168
Csp6I GTAC 1 cut(s) 611
CviAII CATG 5 cut(s) 30, 120, 236, 603, 705
CviQI GTAC 1 cut(s) 611
DdeI CTNAG 3 cut(s) 84, 593, 671
DpnI GATC 1 cut(s) 522
DpnII GATC 1 cut(s) 520
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Eco130I CCWWGG 2 cut(s) 51, 119
Eco31I GGTCTC 1 cut(s) 84
Eco32I GATATC 2 cut(s) 230, 492
Eco47I GGWCC 1 cut(s) 726
Eco57I CTGAAG 1 cut(s) 428
Eco91I GGTNACC 1 cut(s) 694
EcoO109I RGGNCCY 2 cut(s) 580, 726
EcoO65I GGTNACC 1 cut(s) 694
EcoRII CCWGG 1 cut(s) 708
EcoRV GATATC 2 cut(s) 230, 492
EcoT14I CCWWGG 2 cut(s) 51, 119
EcoT22I ATGCAT 1 cut(s) 706
ErhI CCWWGG 2 cut(s) 51, 119
Esp3I CGTCTC 1 cut(s) 775
FaeI CATG 5 cut(s) 33, 123, 239, 606, 708
FatI CATG 5 cut(s) 29, 119, 235, 602, 704
Fnu4HI GCNGC 4 cut(s) 161, 210, 224, 352
FokI GGATG 1 cut(s) 777
Fsp4HI GCNGC 4 cut(s) 161, 210, 224, 352
FspBI CTAG 3 cut(s) 110, 462, 570
GluI GCNGC 4 cut(s) 161, 210, 224, 352
GsaI CCCAGC 1 cut(s) 195
GsuI CTGGAG 2 cut(s) 412, 419
HaeIII GGCC 1 cut(s) 582
Hin1II CATG 5 cut(s) 33, 123, 239, 606, 708
HindIII AAGCTT 1 cut(s) 477
HinfI GANTC 7 cut(s) 78, 196, 340, 439, 538, 713, 787
HphI GGTGA 3 cut(s) 29, 37, 706
Hpy166II GTNNAC 2 cut(s) 611, 838
Hpy188I TCNGA 5 cut(s) 87, 345, 367, 408, 547
Hpy188III TCNNGA 7 cut(s) 176, 287, 380, 436, 662, 752, 791
Hpy8I GTNNAC 2 cut(s) 611, 838
HpyAV CCTTC 4 cut(s) 5, 159, 545, 593
HpyCH4III ACNGT 2 cut(s) 46, 422
HpyCH4IV ACGT 1 cut(s) 613
HpyCH4V TGCA 6 cut(s) 263, 576, 644, 654, 704, 838
HpyF10VI GCNNNNNNNGC 2 cut(s) 232, 241
HpyF3I CTNAG 3 cut(s) 84, 593, 671
HpySE526I ACGT 1 cut(s) 613
Hsp92II CATG 5 cut(s) 33, 123, 239, 606, 708
Kzo9I GATC 1 cut(s) 520
LmnI GCTCC 2 cut(s) 33, 431
Lsp1109I GCAGC 3 cut(s) 147, 196, 338
LweI GCATC 2 cut(s) 563, 691
MaeI CTAG 3 cut(s) 110, 462, 570
MaeII ACGT 1 cut(s) 613
MaeIII GTNAC 4 cut(s) 25, 216, 616, 694
MalI GATC 1 cut(s) 522
MboI GATC 1 cut(s) 520
MboII GAAGA 5 cut(s) 73, 287, 311, 370, 421
MflI RGATCY 1 cut(s) 520
MhlI GDGCHC 3 cut(s) 74, 535, 840
MluCI AATT 6 cut(s) 257, 512, 741, 774, 797, 806
MlyI GAGTC 3 cut(s) 72, 448, 796
MnlI CCTC 8 cut(s) 8, 13, 16, 93, 104, 480, 667, 728
Mph1103I ATGCAT 1 cut(s) 706
MroXI GAANNNNTTC 1 cut(s) 45
MseI TTAA 3 cut(s) 510, 777, 804
MslI CAYNNNNRTG 1 cut(s) 623
MspR9I CCNGG 1 cut(s) 710
MvaI CCWGG 1 cut(s) 710
MvnI CGCG 1 cut(s) 226
MwoI GCNNNNNNNGC 2 cut(s) 232, 241
NcoI CCATGG 1 cut(s) 119
NdeII GATC 1 cut(s) 520
NlaIII CATG 5 cut(s) 33, 123, 239, 606, 708
NlaIV GGNNCC 1 cut(s) 532
NmuCI GTSAC 4 cut(s) 25, 216, 616, 694
NsiI ATGCAT 1 cut(s) 706
NspI RCATGY 2 cut(s) 239, 708
NspV TTCGAA 1 cut(s) 734
OliI CACNNNNGTG 1 cut(s) 623
PaeI GCATGC 1 cut(s) 708
PdmI GAANNNNTTC 1 cut(s) 45
PfeI GAWTC 4 cut(s) 196, 340, 538, 713
PflFI GACNNNGTC 1 cut(s) 786
PkrI GCNGC 4 cut(s) 162, 211, 225, 353
PleI GAGTC 3 cut(s) 72, 447, 795
PpsI GAGTC 3 cut(s) 72, 447, 795
Ppu21I YACGTR 1 cut(s) 614
PpuMI RGGWCCY 1 cut(s) 726
Psp5II RGGWCCY 1 cut(s) 726
Psp6I CCWGG 1 cut(s) 708
PspEI GGTNACC 1 cut(s) 694
PspFI CCCAGC 1 cut(s) 191
PspGI CCWGG 1 cut(s) 708
PspN4I GGNNCC 1 cut(s) 532
PspPI GGNCC 2 cut(s) 580, 726
PspPPI RGGWCCY 1 cut(s) 726
PsuI RGATCY 1 cut(s) 520
PsyI GACNNNGTC 1 cut(s) 786
RsaI GTAC 1 cut(s) 612
RsaNI GTAC 1 cut(s) 611
RseI CAYNNNNRTG 1 cut(s) 623
SaqAI TTAA 3 cut(s) 510, 777, 804
SatI GCNGC 4 cut(s) 161, 210, 224, 352
Sau3AI GATC 1 cut(s) 520
Sau96I GGNCC 2 cut(s) 580, 726
SchI GAGTC 3 cut(s) 72, 448, 796
ScrFI CCNGG 1 cut(s) 710
SduI GDGCHC 3 cut(s) 74, 535, 840
SfaNI GCATC 2 cut(s) 563, 691
SfuI TTCGAA 1 cut(s) 734
SinI GGWCC 1 cut(s) 726
SmiMI CAYNNNNRTG 1 cut(s) 623
SmlI CTYRAG 1 cut(s) 721
SmoI CTYRAG 1 cut(s) 721
SphI GCATGC 1 cut(s) 708
Sse9I AATT 6 cut(s) 257, 512, 741, 774, 797, 806
SsiI CCGC 2 cut(s) 224, 823
SspMI CTAG 3 cut(s) 110, 462, 570
StyD4I CCNGG 1 cut(s) 708
StyI CCWWGG 2 cut(s) 51, 119
TaaI ACNGT 2 cut(s) 46, 422
TaiI ACGT 1 cut(s) 616
TaqI TCGA 3 cut(s) 168, 663, 734
TaqII GACCGA 1 cut(s) 713
TasI AATT 6 cut(s) 257, 512, 741, 774, 797, 806
TauI GCSGC 1 cut(s) 226
TfiI GAWTC 4 cut(s) 196, 340, 538, 713
Tru1I TTAA 3 cut(s) 510, 777, 804
Tru9I TTAA 3 cut(s) 510, 777, 804
TscAI CASTG 4 cut(s) 225, 397, 475, 625
TseFI GTSAC 4 cut(s) 25, 216, 616, 694
TseI GCWGC 3 cut(s) 160, 209, 351
Tsp45I GTSAC 4 cut(s) 25, 216, 616, 694
TspDTI ATGAA 4 cut(s) 197, 489, 564, 810
TspGWI ACGGA 1 cut(s) 799
TspRI CASTG 4 cut(s) 225, 397, 475, 625
Tth111I GACNNNGTC 1 cut(s) 786
VneI GTGCAC 1 cut(s) 836
VpaK11BI GGWCC 1 cut(s) 726
XapI RAATTY 2 cut(s) 257, 512
XceI RCATGY 2 cut(s) 239, 708
XmnI GAANNNNTTC 1 cut(s) 45
XspI CTAG 3 cut(s) 110, 462, 570
Zsp2I ATGCAT 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.