AT3G58720

zinc-RING finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010929
Physical Location & Seq
Reverse (-)
21716544 .. 21717997
1454 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58720.1

Sequence Viewer

Length: 717 bp
ATGGCTATTCCTCTGTTCCAAATCAACCCAATTATAGTTATGATTCGGATACACGATCGTCGGGTTGGCGAGTTCCTGCTTTCTCTTCGCGGAATGCTTGGTCTAGGAGTAATTCAAGATTTAGTACCACCATCACATACTCGGCATCAGATTCCAATCCGTAACAGCAACAACCTGCGAAGACAACACCTCGAGGCACTAAGACAAGCCGTTCACAACCAATCAACTAGACCCGAGAGCAGCTCAAGATCATCATCACAAACCAATGAAGAAGACGAGATCCTCAAACATCTAACAAAAGAAACATATAACCCAGTTCCAAAAAGCACCCTTCTCAGAAGCCTGAGCTTATACTACAGAAACAAAAACCCGGGAAGCGAAAGCTCAAGAAACACTCAAAATCTCTCAGGTGAAGAAGACGACAAAAGATGCTCCGTGTGTTTAGAAGACTTCGAGCCCAAGGAAACAGTGATGCTCACTCCTTGCAAACACATGTTTCACGAGGAATGTATAGTTCCATGGTTAAAGACCAAAGGACAATGTCCTGTCTGTAGATTCGTCATACTCAAGCCGACAAAACAAGACTCTTCTCCTCCGGCTAATGGATCAAATCTCACCGGAGACATGACAACGAATGATCTCTTCACATTAGAGCTACTCTCTGTGGTAAGAGCAATGGAAGAAACTTTCCTTTTCGGTAATCCTCGTCGCCGCTAG

Protein Analysis

238

Amino Acids

27.2

Weight (kDa)

8.77

Isoelectric Point (pI)

65.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 141 - 188 2.1e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 143 - 185 4.2e-15 Ring finger domain
zf-C3HC4_2 PF13923 143 - 184 1.4e-10 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 143 - 185 8e-09 zinc-RING finger domain
zf-RING_11 PF17123 144 - 171 8.7e-12 RING-like zinc finger
zf-rbx1 PF12678 144 - 185 8.3e-10 RING-H2 zinc finger domain
zf-C3HC4 PF00097 144 - 184 8.2e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 144 - 182 1.4e-08 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58720 AT3G58720 AT3G58720 AT3G58720
fragaria_vesca FvH4_6g27790
malus_domestica MD09G1234400.v1.1 MD17G1263500.v1.1
prunus_persica Prupe.3G112600_v2.0.a1
pyrus_communis pycom09g15270 pycom17g26370
rosa_chinensis RchiOBHm_Chr2g0131091
rosa_laevigata RLG00000019166
rosa_multiflora Rmu_sc0003629.1_g000064
rosa_roxburghii Rroxscaffold_2G00113210
rosa_rugosa Rorug02G0294900
rosa_samantha Rh2AG347200 Rh2BG354700 Rh2CG333400 Rh2DG372600
rosa_wichuraiana Rw2G028190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 191
Acc36I ACCTGC 1 cut(s) 183
AccII CGCG 1 cut(s) 90
AciI CCGC 2 cut(s) 90, 712
AclWI GGATC 2 cut(s) 274, 613
AfaI GTAC 1 cut(s) 126
AfiI CCNNNNNNNGG 1 cut(s) 602
AflIII ACRYGT 1 cut(s) 492
AgsI TTSAA 1 cut(s) 116
AluBI AGCT 4 cut(s) 243, 348, 384, 655
AluI AGCT 4 cut(s) 243, 348, 384, 655
Alw26I GTCTC 1 cut(s) 615
AlwI GGATC 2 cut(s) 274, 613
Ama87I CYCGRG 3 cut(s) 191, 233, 370
ApeKI GCWGC 1 cut(s) 240
AsuC2I CCSGG 2 cut(s) 371, 372
AsuHPI GGTGA 2 cut(s) 422, 607
AvaI CYCGRG 3 cut(s) 191, 233, 370
BanII GRGCYC 1 cut(s) 459
BauI CACGAG 1 cut(s) 500
BbsI GAAGAC 4 cut(s) 187, 279, 423, 453
BbvI GCAGC 1 cut(s) 252
BccI CCATC 1 cut(s) 139
BceAI ACGGC 1 cut(s) 194
BciVI GTATCC 1 cut(s) 42
BcnI CCSGG 2 cut(s) 371, 372
BcoDI GTCTC 1 cut(s) 615
BfaI CTAG 3 cut(s) 104, 228, 715
BfmI CTRYAG 2 cut(s) 355, 550
BfuAI ACCTGC 1 cut(s) 183
BfuI GTATCC 1 cut(s) 42
BisI GCNGC 2 cut(s) 241, 712
BlsI GCNGC 2 cut(s) 242, 713
Bme1390I CCNGG 2 cut(s) 371, 372
BmeT110I CYCGRG 3 cut(s) 191, 233, 370
BmrFI CCNGG 2 cut(s) 371, 372
BmrI ACTGGG 1 cut(s) 308
BmsI GCATC 3 cut(s) 154, 419, 462
BmuI ACTGGG 1 cut(s) 308
BpiI GAAGAC 4 cut(s) 187, 279, 423, 453
BplI GAGNNNNNCTC 4 cut(s) 227, 259, 644, 676
Bpu10I CCTNAGC 1 cut(s) 344
BpuEI CTTGAG 3 cut(s) 229, 370, 551
BpuMI CCSGG 2 cut(s) 371, 372
BsaBI GATNNNNATC 2 cut(s) 155, 253
BsaJI CCNNGG 3 cut(s) 370, 459, 518
BsaWI WCCGGW 1 cut(s) 617
Bsc4I CCNNNNNNNGG 1 cut(s) 602
Bse1I ACTGG 1 cut(s) 314
Bse3DI GCAATG 1 cut(s) 681
Bse8I GATNNNNATC 2 cut(s) 155, 253
BseDI CCNNGG 3 cut(s) 370, 459, 518
BseJI GATNNNNATC 2 cut(s) 155, 253
BseLI CCNNNNNNNGG 1 cut(s) 602
BseMI GCAATG 1 cut(s) 681
BseMII CTCAG 3 cut(s) 335, 349, 420
BseNI ACTGG 1 cut(s) 314
BseRI GAGGAG 1 cut(s) 582
BseXI GCAGC 1 cut(s) 252
Bsh1236I CGCG 1 cut(s) 90
Bsh1285I CGRYCG 1 cut(s) 58
BsiEI CGRYCG 1 cut(s) 58
BsiHKCI CYCGRG 3 cut(s) 191, 233, 370
BsiSI CCGG 3 cut(s) 371, 596, 618
BslI CCNNNNNNNGG 1 cut(s) 602
BsmAI GTCTC 1 cut(s) 615
BsmI GAATGC 1 cut(s) 99
BsoBI CYCGRG 3 cut(s) 191, 233, 370
Bsp1286I GDGCHC 1 cut(s) 459
Bsp143I GATC 5 cut(s) 55, 248, 279, 605, 637
Bsp19I CCATGG 1 cut(s) 518
BspACI CCGC 2 cut(s) 90, 712
BspCNI CTCAG 3 cut(s) 336, 348, 419
BspFNI CGCG 1 cut(s) 90
BspMI ACCTGC 1 cut(s) 183
BspPI GGATC 2 cut(s) 274, 613
BsrDI GCAATG 1 cut(s) 681
BsrI ACTGG 1 cut(s) 314
BssECI CCNNGG 3 cut(s) 370, 459, 518
BssMI GATC 5 cut(s) 55, 248, 279, 605, 637
BssSI CACGAG 1 cut(s) 500
BssT1I CCWWGG 2 cut(s) 459, 518
Bst2BI CACGAG 1 cut(s) 500
Bst4CI ACNGT 1 cut(s) 469
Bst6I CTCTTC 3 cut(s) 90, 592, 647
BstDEI CTNAG 4 cut(s) 200, 335, 344, 406
BstDSI CCRYGG 1 cut(s) 518
BstFNI CGCG 1 cut(s) 90
BstKTI GATC 5 cut(s) 58, 251, 282, 608, 640
BstMAI GTCTC 1 cut(s) 615
BstMBI GATC 5 cut(s) 55, 248, 279, 605, 637
BstMCI CGRYCG 1 cut(s) 58
BstNSI RCATGY 1 cut(s) 496
BstSCI CCNGG 2 cut(s) 369, 370
BstSFI CTRYAG 2 cut(s) 355, 550
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 252
BstV2I GAAGAC 4 cut(s) 187, 279, 423, 453
BstX2I RGATCY 1 cut(s) 279
BstYI RGATCY 1 cut(s) 279
BsuI GTATCC 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 518
BtsIMutI CAGTG 1 cut(s) 474
BveI ACCTGC 1 cut(s) 183
Cfr9I CCCGGG 1 cut(s) 370
Csp6I GTAC 1 cut(s) 125
CviAII CATG 3 cut(s) 493, 519, 625
CviQI GTAC 1 cut(s) 125
DdeI CTNAG 4 cut(s) 200, 335, 344, 406
DpnI GATC 5 cut(s) 57, 250, 281, 607, 639
DpnII GATC 5 cut(s) 55, 248, 279, 605, 637
Eam1104I CTCTTC 3 cut(s) 90, 592, 647
EarI CTCTTC 3 cut(s) 90, 592, 647
Eco130I CCWWGG 2 cut(s) 459, 518
Eco24I GRGCYC 1 cut(s) 459
Eco88I CYCGRG 3 cut(s) 191, 233, 370
EcoT14I CCWWGG 2 cut(s) 459, 518
EcoT38I GRGCYC 1 cut(s) 459
ErhI CCWWGG 2 cut(s) 459, 518
FaeI CATG 3 cut(s) 496, 522, 628
FatI CATG 3 cut(s) 492, 518, 624
Fnu4HI GCNGC 2 cut(s) 241, 712
FriOI GRGCYC 1 cut(s) 459
Fsp4HI GCNGC 2 cut(s) 241, 712
FspBI CTAG 3 cut(s) 104, 228, 715
GluI GCNGC 2 cut(s) 241, 712
HapII CCGG 3 cut(s) 371, 596, 618
Hin1II CATG 3 cut(s) 496, 522, 628
HinfI GANTC 4 cut(s) 43, 151, 555, 584
HpaII CCGG 3 cut(s) 371, 596, 618
HphI GGTGA 2 cut(s) 422, 607
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 3 cut(s) 48, 150, 338
Hpy188III TCNNGA 4 cut(s) 116, 246, 387, 500
Hpy8I GTNNAC 1 cut(s) 214
Hpy99I CGWCG 2 cut(s) 63, 711
HpyAV CCTTC 1 cut(s) 341
HpyCH4III ACNGT 1 cut(s) 469
HpyCH4V TGCA 1 cut(s) 486
HpyF3I CTNAG 4 cut(s) 200, 335, 344, 406
Hsp92II CATG 3 cut(s) 496, 522, 628
Kzo9I GATC 5 cut(s) 55, 248, 279, 605, 637
LmnI GCTCC 1 cut(s) 437
LpnPI CCDG 9 cut(s) 89, 188, 327, 356, 384, 393, 558, 609, 631
Lsp1109I GCAGC 1 cut(s) 252
LweI GCATC 3 cut(s) 154, 419, 462
MaeI CTAG 3 cut(s) 104, 228, 715
MaeIII GTNAC 1 cut(s) 161
MalI GATC 5 cut(s) 57, 250, 281, 607, 639
MboI GATC 5 cut(s) 55, 248, 279, 605, 637
MflI RGATCY 1 cut(s) 279
MhlI GDGCHC 1 cut(s) 459
MluCI AATT 2 cut(s) 30, 111
MlyI GAGTC 1 cut(s) 578
MnlI CCTC 7 cut(s) 21, 187, 200, 293, 496, 603, 714
MseI TTAA 1 cut(s) 524
MspI CCGG 3 cut(s) 371, 596, 618
MspR9I CCNGG 2 cut(s) 371, 372
Mva1269I GAATGC 1 cut(s) 99
MvnI CGCG 1 cut(s) 90
NciI CCSGG 2 cut(s) 371, 372
NcoI CCATGG 1 cut(s) 518
NdeII GATC 5 cut(s) 55, 248, 279, 605, 637
NlaIII CATG 3 cut(s) 496, 522, 628
NmeAIII GCCGAG 1 cut(s) 121
NspI RCATGY 1 cut(s) 496
PaeR7I CTCGAG 1 cut(s) 191
PciI ACATGT 1 cut(s) 492
PctI GAATGC 1 cut(s) 99
PfeI GAWTC 3 cut(s) 43, 151, 555
PflFI GACNNNGTC 1 cut(s) 540
PkrI GCNGC 2 cut(s) 242, 713
Ple19I CGATCG 1 cut(s) 58
PleI GAGTC 1 cut(s) 578
PpsI GAGTC 1 cut(s) 578
PscI ACATGT 1 cut(s) 492
PspXI VCTCGAGB 1 cut(s) 191
PsuI RGATCY 1 cut(s) 279
PsyI GACNNNGTC 1 cut(s) 540
PvuI CGATCG 1 cut(s) 58
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
SaqAI TTAA 1 cut(s) 524
SatI GCNGC 2 cut(s) 241, 712
Sau3AI GATC 5 cut(s) 55, 248, 279, 605, 637
SchI GAGTC 1 cut(s) 578
ScrFI CCNGG 2 cut(s) 371, 372
SduI GDGCHC 1 cut(s) 459
SetI ASST 7 cut(s) 177, 192, 245, 350, 386, 412, 657
SfaNI GCATC 3 cut(s) 154, 419, 462
SfcI CTRYAG 2 cut(s) 355, 550
Sfr274I CTCGAG 1 cut(s) 191
SlaI CTCGAG 1 cut(s) 191
SmaI CCCGGG 1 cut(s) 372
SmlI CTYRAG 4 cut(s) 191, 244, 385, 566
SmoI CTYRAG 4 cut(s) 191, 244, 385, 566
Sse9I AATT 2 cut(s) 30, 111
SsiI CCGC 2 cut(s) 90, 712
SspMI CTAG 3 cut(s) 104, 228, 715
StyD4I CCNGG 2 cut(s) 369, 370
StyI CCWWGG 2 cut(s) 459, 518
TaaI ACNGT 1 cut(s) 469
TaqI TCGA 2 cut(s) 192, 453
TasI AATT 2 cut(s) 30, 111
TauI GCSGC 1 cut(s) 714
TfiI GAWTC 3 cut(s) 43, 151, 555
Tru1I TTAA 1 cut(s) 524
Tru9I TTAA 1 cut(s) 524
TscAI CASTG 1 cut(s) 474
TseI GCWGC 1 cut(s) 240
TspDTI ATGAA 1 cut(s) 282
TspGWI ACGGA 2 cut(s) 149, 424
TspMI CCCGGG 1 cut(s) 370
TspRI CASTG 1 cut(s) 474
Tth111I GACNNNGTC 1 cut(s) 540
XceI RCATGY 1 cut(s) 496
XhoI CTCGAG 1 cut(s) 191
XmaI CCCGGG 1 cut(s) 370
XspI CTAG 3 cut(s) 104, 228, 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.