Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010929

Physical Location & Seq

Genomic Coordinates Reverse (-)

21425282 .. 21427599

Gene Structure 2318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g27790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGACGAGCAGAAGAACCAACTCTAACACTTCAGCAACAATTAACCCCAGACTTGCCTACCCTCCTCCTCCTCCTAGTACCCATGACAATCCATACGAGTACTATTTTCCTTCTCCTCCTCCACCTTCCCTTTCTTCTCCTCTTAACCATCTTTCTCCGTATGACTACTTTTCAATTGATGATACTGATGATGTTAATGATCACTGGCATTTCGAGAACCCTGCTCGGCCCCTGTCAAATTCCATCCAAATCACCCGAGTTACCAGAACAAGGCGGCCATTTGAGGGTGCTATAGGAGCAGCACGACTTCCTGACTTTGCAAGCTTACTAGCGCCACCAGGTTCCCGAATTCATGCTGTACTCCTGGACGATCCAAGGACTCGACAGATCCTCAGCGGCCAGTGGACTCCGGCAGCTCCTAGACAAGAAGCCGACTCGAGGTTGACATATAATGAGCAAAAGAAGGCATTGCAGAAGCTGAGGAAGGAGATATACAATCCTTTAAGGAGAATATCGCCTACGGTGAACTTGTATTATAGAGGCACTGTTGTTGATAGTAACAAAGAAAGAAATGATAATGGCAAGAGTTGTGCTATTTGCTTGGAAGACTTTGAGCCTAAACAAGAGGTTATGCTCACCCCATGTAAACATATGTTCCATGAGGAATGCATTGTACCTTGGGTCAAGAGCAGTGGTCGGTGCCCGGTTTGCAGGTTCGGAATAAGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

244

Amino Acids

27.65

Weight (kDa)

8.51

Isoelectric Point (pI)

57.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	195 - 241	2.3e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	196 - 238	1.1e-15	Ring finger domain
zf-rbx1	PF12678	196 - 238	4.4e-08	RING-H2 zinc finger domain
zf-RING_11	PF17123	197 - 224	1.1e-12	RING-like zinc finger
zf-C3HC4_2	PF13923	197 - 237	1.2e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	197 - 237	4.8e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	197 - 238	1.9e-08	zinc-RING finger domain
zf-RING_UBOX	PF13445	197 - 235	1.2e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58720 AT3G58720 AT3G58720 AT3G58720
fragaria_vesca	FvH4_6g27790
malus_domestica	MD09G1234400.v1.1 MD17G1263500.v1.1
prunus_persica	Prupe.3G112600_v2.0.a1
pyrus_communis	pycom09g15270 pycom17g26370
rosa_chinensis	RchiOBHm_Chr2g0131091
rosa_laevigata	RLG00000019166
rosa_multiflora	Rmu_sc0003629.1_g000064
rosa_roxburghii	Rroxscaffold_2G00113210
rosa_rugosa	Rorug02G0294900
rosa_samantha	Rh2AG347200 Rh2BG354700 Rh2CG333400 Rh2DG372600
rosa_wichuraiana	Rw2G028190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	702
AccB1I	GGYRCC	1 cut(s)	699
AciI	CCGC	2 cut(s)	274, 396
AclWI	GGATC	2 cut(s)	365, 382
AcoI	YGGCCR	2 cut(s)	275, 397
AcsI	RAATTY	2 cut(s)	238, 348
AcuI	CTGAAG	1 cut(s)	15
AfaI	GTAC	4 cut(s)	79, 101, 360, 675
AfiI	CCNNNNNNNGG	3 cut(s)	270, 284, 438
AgsI	TTSAA	1 cut(s)	174
AjnI	CCWGG	2 cut(s)	337, 363
AluBI	AGCT	3 cut(s)	324, 416, 478
AluI	AGCT	3 cut(s)	324, 416, 478
AlwI	GGATC	2 cut(s)	365, 382
AlwNI	CAGNNNCTG	1 cut(s)	478
Ama87I	CYCGRG	2 cut(s)	255, 436
AoxI	GGCC	3 cut(s)	227, 275, 397
ApeKI	GCWGC	2 cut(s)	299, 413
ApoI	RAATTY	2 cut(s)	238, 348
AspLEI	GCGC	1 cut(s)	334
AspS9I	GGNCC	1 cut(s)	228
AsuC2I	CCSGG	1 cut(s)	704
AsuHPI	GGTGA	3 cut(s)	244, 535, 628
AvaI	CYCGRG	2 cut(s)	255, 436
BaeGI	GKGCMC	1 cut(s)	704
BanI	GGYRCC	1 cut(s)	699
BarI	GAAGNNNNNNTAC	2 cut(s)	476, 508
BbsI	GAAGAC	1 cut(s)	612
BbvCI	CCTCAGC	2 cut(s)	392, 479
BbvI	GCAGC	2 cut(s)	311, 425
BccI	CCATC	2 cut(s)	156, 251
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BciT130I	CCWGG	2 cut(s)	339, 365
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	1 cut(s)	704
BfaI	CTAG	3 cut(s)	75, 329, 420
BfmI	CTRYAG	1 cut(s)	291
BfoI	RGCGCY	1 cut(s)	335
BfuAI	ACCTGC	1 cut(s)	702
BisI	GCNGC	4 cut(s)	275, 300, 397, 414
BlsI	GCNGC	4 cut(s)	276, 301, 398, 415
BmcAI	AGTACT	1 cut(s)	101
Bme1390I	CCNGG	3 cut(s)	339, 365, 704
BmeT110I	CYCGRG	2 cut(s)	255, 436
BmgT120I	GGNCC	1 cut(s)	228
BmiI	GGNNCC	3 cut(s)	230, 343, 701
BmrFI	CCNGG	3 cut(s)	339, 365, 704
BpiI	GAAGAC	1 cut(s)	612
Bpu10I	CCTNAGC	2 cut(s)	392, 479
BpuMI	CCSGG	1 cut(s)	704
BsaJI	CCNNGG	2 cut(s)	374, 677
Bsc4I	CCNNNNNNNGG	3 cut(s)	270, 284, 438
Bse1I	ACTGG	2 cut(s)	209, 400
Bse3DI	GCAATG	1 cut(s)	467
BseBI	CCWGG	2 cut(s)	339, 365
BseDI	CCNNGG	2 cut(s)	374, 677
BseGI	GGATG	1 cut(s)	243
BseLI	CCNNNNNNNGG	3 cut(s)	270, 284, 438
BseMI	GCAATG	1 cut(s)	467
BseMII	CTCAG	2 cut(s)	406, 470
BseNI	ACTGG	2 cut(s)	209, 400
BseRI	GAGGAG	6 cut(s)	54, 57, 60, 105, 108, 129
BseSI	GKGCMC	1 cut(s)	704
BseXI	GCAGC	2 cut(s)	311, 425
BshFI	GGCC	3 cut(s)	229, 277, 399
BshNI	GGYRCC	1 cut(s)	699
BsiHKCI	CYCGRG	2 cut(s)	255, 436
BsiSI	CCGG	2 cut(s)	410, 704
BslI	CCNNNNNNNGG	3 cut(s)	270, 284, 438
BsmI	GAATGC	1 cut(s)	671
BsnI	GGCC	3 cut(s)	229, 277, 399
BsoBI	CYCGRG	2 cut(s)	255, 436
Bsp1286I	GDGCHC	1 cut(s)	704
Bsp143I	GATC	3 cut(s)	199, 370, 387
BspACI	CCGC	2 cut(s)	274, 396
BspANI	GGCC	3 cut(s)	229, 277, 399
BspCNI	CTCAG	2 cut(s)	405, 471
BspLI	GGNNCC	3 cut(s)	230, 343, 701
BspMI	ACCTGC	1 cut(s)	702
BspPI	GGATC	2 cut(s)	365, 382
BspT107I	GGYRCC	1 cut(s)	699
BsrDI	GCAATG	1 cut(s)	467
BsrI	ACTGG	2 cut(s)	209, 400
BssECI	CCNNGG	2 cut(s)	374, 677
BssMI	GATC	3 cut(s)	199, 370, 387
BssT1I	CCWWGG	2 cut(s)	374, 677
Bst2UI	CCWGG	2 cut(s)	339, 365
Bst4CI	ACNGT	2 cut(s)	523, 547
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	2 cut(s)	392, 479
BstF5I	GGATG	1 cut(s)	243
BstH2I	RGCGCY	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	3 cut(s)	202, 373, 390
BstMBI	GATC	3 cut(s)	199, 370, 387
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 708
BstNI	CCWGG	2 cut(s)	339, 365
BstSCI	CCNGG	3 cut(s)	337, 363, 702
BstSFI	CTRYAG	1 cut(s)	291
BstSLI	GKGCMC	1 cut(s)	704
BstV1I	GCAGC	2 cut(s)	311, 425
BstV2I	GAAGAC	1 cut(s)	612
BstX2I	RGATCY	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	387
BsuRI	GGCC	3 cut(s)	229, 277, 399
BtsCI	GGATG	1 cut(s)	243
BtsI	GCAGTG	1 cut(s)	697
BtsIMutI	CAGTG	4 cut(s)	202, 407, 543, 697
BveI	ACCTGC	1 cut(s)	702
Cac8I	GCNNGC	1 cut(s)	322
CaiI	CAGNNNCTG	1 cut(s)	478
CfoI	GCGC	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	228
CsiI	ACCWGGT	1 cut(s)	337
Csp6I	GTAC	4 cut(s)	78, 100, 359, 674
CspCI	CAANNNNNGTGG	2 cut(s)	673, 708
CviAII	CATG	4 cut(s)	83, 353, 642, 659
CviJI	RGCY	8 cut(s)	229, 277, 324, 399, 416, 431, 478, 616
CviKI_1	RGCY	8 cut(s)	229, 277, 324, 399, 416, 431, 478, 616
CviQI	GTAC	4 cut(s)	78, 100, 359, 674
DdeI	CTNAG	2 cut(s)	392, 479
DpnI	GATC	3 cut(s)	201, 372, 389
DpnII	GATC	3 cut(s)	199, 370, 387
EaeI	YGGCCR	2 cut(s)	275, 397
Eco130I	CCWWGG	2 cut(s)	374, 677
Eco57I	CTGAAG	1 cut(s)	15
Eco88I	CYCGRG	2 cut(s)	255, 436
EcoRI	GAATTC	1 cut(s)	348
EcoRII	CCWGG	2 cut(s)	337, 363
EcoT14I	CCWWGG	2 cut(s)	374, 677
EcoT22I	ATGCAT	1 cut(s)	671
ErhI	CCWWGG	2 cut(s)	374, 677
FaeI	CATG	4 cut(s)	86, 356, 645, 662
FatI	CATG	4 cut(s)	82, 352, 641, 658
FauNDI	CATATG	1 cut(s)	651
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	4 cut(s)	275, 300, 397, 414
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	4 cut(s)	275, 300, 397, 414
FspBI	CTAG	3 cut(s)	75, 329, 420
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	4 cut(s)	275, 300, 397, 414
HaeII	RGCGCY	1 cut(s)	335
HaeIII	GGCC	3 cut(s)	229, 277, 399
HapII	CCGG	2 cut(s)	410, 704
HhaI	GCGC	1 cut(s)	334
Hin1II	CATG	4 cut(s)	86, 356, 645, 662
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HindIII	AAGCTT	1 cut(s)	322
HinfI	GANTC	3 cut(s)	379, 406, 434
HpaII	CCGG	2 cut(s)	410, 704
HphI	GGTGA	3 cut(s)	244, 535, 628
Hpy166II	GTNNAC	4 cut(s)	405, 444, 526, 647
Hpy188I	TCNGA	1 cut(s)	719
Hpy188III	TCNNGA	4 cut(s)	214, 311, 345, 685
Hpy8I	GTNNAC	4 cut(s)	405, 444, 526, 647
HpyAV	CCTTC	4 cut(s)	120, 135, 457, 478
HpyCH4III	ACNGT	2 cut(s)	523, 547
HpyCH4V	TGCA	4 cut(s)	320, 472, 669, 711
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 708
HpyF3I	CTNAG	2 cut(s)	392, 479
Hsp92II	CATG	4 cut(s)	86, 356, 645, 662
HspAI	GCGC	1 cut(s)	332
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	199, 370, 387
LmnI	GCTCC	2 cut(s)	296, 421
Lsp1109I	GCAGC	2 cut(s)	311, 425
MabI	ACCWGGT	1 cut(s)	337
MaeI	CTAG	3 cut(s)	75, 329, 420
MaeIII	GTNAC	3 cut(s)	259, 557, 725
MalI	GATC	3 cut(s)	201, 372, 389
MboI	GATC	3 cut(s)	199, 370, 387
MboII	GAAGA	3 cut(s)	24, 126, 617
MfeI	CAATTG	1 cut(s)	174
MflI	RGATCY	1 cut(s)	387
MhlI	GDGCHC	1 cut(s)	704
MluCI	AATT	4 cut(s)	39, 174, 238, 348
MlyI	GAGTC	3 cut(s)	373, 400, 428
Mph1103I	ATGCAT	1 cut(s)	671
MseI	TTAA	4 cut(s)	42, 144, 195, 503
MspA1I	CMGCKG	1 cut(s)	396
MspI	CCGG	2 cut(s)	410, 704
MspR9I	CCNGG	3 cut(s)	339, 365, 704
MunI	CAATTG	1 cut(s)	174
Mva1269I	GAATGC	1 cut(s)	671
MvaI	CCWGG	2 cut(s)	339, 365
MwoI	GCNNNNNNNGC	2 cut(s)	296, 708
NciI	CCSGG	1 cut(s)	704
NdeI	CATATG	1 cut(s)	651
NdeII	GATC	3 cut(s)	199, 370, 387
NlaIII	CATG	4 cut(s)	86, 356, 645, 662
NlaIV	GGNNCC	3 cut(s)	230, 343, 701
NmeAIII	GCCGAG	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	725
NsiI	ATGCAT	1 cut(s)	671
PaeR7I	CTCGAG	1 cut(s)	436
PctI	GAATGC	1 cut(s)	671
PfoI	TCCNGGA	1 cut(s)	363
PkrI	GCNGC	4 cut(s)	276, 301, 398, 415
PleI	GAGTC	3 cut(s)	373, 400, 428
PpsI	GAGTC	3 cut(s)	373, 400, 428
Psp6I	CCWGG	2 cut(s)	337, 363
PspGI	CCWGG	2 cut(s)	337, 363
PspN4I	GGNNCC	3 cut(s)	230, 343, 701
PspPI	GGNCC	1 cut(s)	228
PspXI	VCTCGAGB	1 cut(s)	436
PstNI	CAGNNNCTG	1 cut(s)	478
PsuI	RGATCY	1 cut(s)	387
RsaI	GTAC	4 cut(s)	79, 101, 360, 675
RsaNI	GTAC	4 cut(s)	78, 100, 359, 674
SaqAI	TTAA	4 cut(s)	42, 144, 195, 503
SatI	GCNGC	4 cut(s)	275, 300, 397, 414
Sau3AI	GATC	3 cut(s)	199, 370, 387
Sau96I	GGNCC	1 cut(s)	228
ScaI	AGTACT	1 cut(s)	101
SchI	GAGTC	3 cut(s)	373, 400, 428
ScrFI	CCNGG	3 cut(s)	339, 365, 704
SduI	GDGCHC	1 cut(s)	704
SetI	ASST	9 cut(s)	127, 326, 343, 418, 443, 480, 630, 679, 716
SexAI	ACCWGGT	1 cut(s)	337
SfcI	CTRYAG	1 cut(s)	291
Sfr274I	CTCGAG	1 cut(s)	436
SlaI	CTCGAG	1 cut(s)	436
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
Sse9I	AATT	4 cut(s)	39, 174, 238, 348
SsiI	CCGC	2 cut(s)	274, 396
SspMI	CTAG	3 cut(s)	75, 329, 420
StyD4I	CCNGG	3 cut(s)	337, 363, 702
StyI	CCWWGG	2 cut(s)	374, 677
TaaI	ACNGT	2 cut(s)	523, 547
TaqI	TCGA	3 cut(s)	213, 382, 437
TasI	AATT	4 cut(s)	39, 174, 238, 348
TatI	WGTACW	2 cut(s)	99, 358
TauI	GCSGC	2 cut(s)	277, 399
Tru1I	TTAA	4 cut(s)	42, 144, 195, 503
Tru9I	TTAA	4 cut(s)	42, 144, 195, 503
TscAI	CASTG	4 cut(s)	209, 407, 550, 697
TseFI	GTSAC	1 cut(s)	725
TseI	GCWGC	2 cut(s)	299, 413
Tsp45I	GTSAC	1 cut(s)	725
TspDTI	ATGAA	1 cut(s)	341
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	4 cut(s)	209, 407, 550, 697
XapI	RAATTY	2 cut(s)	238, 348
XhoI	CTCGAG	1 cut(s)	436
XspI	CTAG	3 cut(s)	75, 329, 420
ZrmI	AGTACT	1 cut(s)	101
Zsp2I	ATGCAT	1 cut(s)	671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.