Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010929

Physical Location & Seq

Genomic Coordinates Forward (+)

32611822 .. 32622443

Gene Structure 10622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0294900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3915 bp

ATGTTAAAAAGAAAAAAGAAAAATCACTTTAGCGGGCATCAAGTGCGTTCCGGGTCATTTTCTCCCCCGCCAAAAGGGCCAAACCCGGACTATAAATACCCATCCATTTCATTTCAGTCCTCATCGTCTTCCTTCACACTTTGCACAGTCCAGAGTCCAGACCTCTCTACTGCGACCCGAACCTCTTCACCAAAACCGACCTCTGTATCGCTCTTTCACTCTTCACGCTCGCACGCGCTTAGATTATTCCGATCGACGACCGGTACCGGAATTTCATCTTCAATCCAGGAAACGGGTTCAAGCATGGATTCGTATACACTTAAGTCCATGGCAGACTTGCCGGCTCCTTTTCGAGCATGTTTTAATTTTAGGTATTTCAACTCTTTGCAGAGTGAATGCTTTCCTGCTTGTTTCCACTCAGATGTGAACATGGTTGTGTCAGCGCCAACTGGAAGTGGTAAAACAGTCATTTTTGAGCTTTGCATTTTGAGGCTTCTTTCAAGATTCATCTCTGAGGATGGGAGGTTTACACGTACAAATGGAACTCTCAAAACAATCTATATTGCCCCATCAAAAGCTTTAGTTCAGGAGAAGGTTCGTGATTGGACCCAGAAGTTTGGATCTCGGGGCATAGTTTGCTTGGAGCTCACTGGAGATAATGAATCTTACAACACCAGGAGTTTACAGGAAGCAGACATTATTTTAACCACTCCTGAGAAATTTGATGCTGTAACGCGGTATCGCATAAAGGATGGTGGATTGGGCTTTTTCAGCGATATAGCACTTCTACTTATTGATGAAGTTCATCTTTTGAATGATCCTCGTGGAGCAGTTTTGGAAGCAATAGTTAGCAGAATAAAAATGCTTGCTTACAACCCTGAAATGAAGTCAAGCGCTCTGGCTCATGTTCGTTTTCTAGCTGTGTCTGCCACCATTCCAAATATTGAGAACCTTGCGGAGTGGCTCAAGGTGCCCGTCCAAGGGATTAAAAGGTTTGGAGAAGAAATGAGGCCTGTAAAGCTGACTACAAAAGTTTTTGGCTACGCCCCAGCAAAAAATGATTTTCTATTTGAAAAGCGCCTTCAAAACTACATTTTCGATATCCTTATGCAATATTCAAGAGGGAAGTCCGCTCTAATTTTTTGCTCAACTAGAAAAGGCGCACAAGAAGCAGCACAGATACTTTCTCAGACAGTCATGGCCTTTGGTCATTCAAATCCATTCATTAAAAGCAGAGAACAGCAAGAGAGGCTAAGGGAAGCTTCATTGTCATGCAGTGACAAACAAATGCAATCTTATATGATTTATGGTGTTGGTTATCACAACGGTGGCCTTTGCCTCAAGGATCGTAATCTCATTGAAAGCCTTTTCCTTAAGGGTGATGTTCAAATTCTGTGCACAACAAATACTCTTGCACATGGAATCAACCTACCAGCACATACAGTAGTCATAAAATCAACTCAGCACTTCAACAAAGAAAAAGGAGTCTACATGGAAATTGACCGATCTACACTGCTACAGATGTGTGGTAGGGCAGGTCGGCCACCTTTTGATGATACAGGAATGGTTATAATCATGACAAGAAGAGATACGGTTCACTTGTATGAGAATCTCTTGAATGGATGTGAGATGGTGGAATCACAATTGCTTTCATGTTTGACGGAGCATTTAACTGCGGAGATAGTTCAACTGACTGTCTCTGACATTACAAGGGCAATCGAATGGATGAAGTGCTCTTTCTTGTACGTGAGAATGAAGAAGAACCCTGGACACTATGCAGTTAGAAAAGTTATTTCCAATGATCGTATAGAAAAGCATATGCTAGAGGTCTGTGTACAGAAAGTTAATGAGTTGTCGCAGCATCAGATGATATGGACTGATGAAGATGGTTTTCTGTTGAAACCACTAGAACCTGGGAGGCTGATGACGAAGTACTATTTGAAATTTGACACAATGAAATACATTATTCAGACACCTGCAAACTGCAGCTTGGAAGATGCTCTTCATGTGATATGCCGTGCTGAGGAAATTTCATGGATACAGCTCAGGCGCAATGAGAAAAAGCTTCTAAATGACATAAACACTGATAAAGATGGTCGCCTGCGCTTTCACATTCTTGATGACAAAGGGAAGCGAAAAAAGCGTATTCAAACCAGAGAAGAAAAGATATTTCTTTTGGCTAATGACTGCTTGACTGGTGATCCTTCGGTGCATGATTTATCCCTTACCCAGGATATGAACTCCATATGCTCAAATGGCTGTAGAATTGCCAGATGCATGAAAGAATTTTTTATTTACCAAAAGAATTACAAAGGAGCCTTGAACTCGATGCTTTTGGCAAAGTCTATGTATCAGAAACTCTGGGATGACAGTCCATACTTGCTGAAACAATTACCAGGGATTGGAATGGTGACTGCAAAGGCACTACATTCGATGGGAGTTAAATCATTTGAGACACTAGCTGAGGCTGATCCTAGGAGAATTGAGATAGTCACTGGTCGAAAATACCCATATGGGAACCATATAAAAGAGTCTCTACTGTCTCTACCTCCAAAGGTTGAGTTGAAAGTTGAGGAAACTGAATGCCGGGGGCAAGGGAAACTGATGCTAGCGGTGACACTGACTAGGCTATCACAGACACTCCAATCAACAAAACGACATTATGCTGATATGATTGTAGGTTCAGAAGAAGATAACCTGGTTCTCTTTCATGAGAAAATAAGAGTTGATGAATTCTCGAGCCCCTATAGCGCAACAGTTCTCCTGTCAAATCCCCAACAAGGAAAGCTGACTGTTAAGGCTGATCTTATATTTGAAGAATACATTGGTATTGATCTAAACCAGGAGCTTATCTTAATGAAGAAAAGCAATTTAAGTACAATTAACAAACGAGGAAAAAAAGCACCCTCTCTTCCTCTACCTGAGGAAGTATGTATCATAGAAGATGATACTTACGAAGGCCCAAGTGAAGTGCTTCCAAACTCGACGAAATCCAAAAGGGTAGATGGTCCCATGCCCAGTTTCAAGCTTCTAGATGAAGACTCTGAAGAAGATGAGGTTGCCAACAAAGTTCATGAAGATGAGATTGCTGCCAAAGTTCAAACTGATGACAAAGTTGTGACACAACAAACAGTATTTGACCACATACGTGAAAAGGCAAAGAACTTCCCTGTCTTGGCGTCATCAAATAGTGTGCTTCCTCCATCATCAGAGCCCTTGGAATTAGCAAGGAAACGTGCTCGTGAGAAGAAGCTTGGCCCGGAAAGTGGAGTAGAGGTTCTGGAAGAATTAGAATGGAATAAAGTTCAAAGACGAACTGTGGTCAATCCATCTTCAGAACTTAAAGAAGATGTTGTTCTGCTTTCTAGTATCAAAAATCATCCAACTCCCAGAAGCTCAGCTGCCCTGAACGTCATGGATGGCAGAGGAGAAACAATATTCGAGCACATACGCACAAAAGCTAAGAATTTTCCGGTGATCAATAAACCAAATGTGGTGGAGGCTGAGTCTTTAATCCAGACAAAACAACGCCTATATAAGACTGAACCAGAGTTTAGCATGGATATTACTGCCGTGCTGAAAGGAACAAAACCAAATGAGGTTATCAGAGATACTGAATGTGATAGGAGGTTGCTCTCCGGTAGCTCCTGCAACCCTCATGGAATATTGAACGCTTCTCCCGGAGGTTTAAGCAATGGAGCCAATCTCTCATCAAGTAACATGCCATCTTTCGATATCTCCATGTTCAAGAATCCGAAGCGACCTGCAGATCCAGCAAGCACTGTGGAGAATACTAGGAAGAAACATCAACACTCTCCAATTGTACCACCAAGGCACTGCTCGTTGACAGCAGTTGGAAAATCCAGAGAAGTAGAAACATTTCTTGGGTTCGAGAGTGTCTTTTCCTTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

1304

Amino Acids

146.86

Weight (kDa)

8.81

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	128 - 317	2.2e-29	DEAD/DEAH box helicase
ResIII	PF04851	139 - 274	2.5e-08	Type III restriction enzyme, res subunit
Helicase_C	PF00271	435 - 514	2.6e-08	Helicase conserved C-terminal domain
WHD_SNRNP200	PF23445	546 - 625	6.6e-13	Winged Helix-turn-helix domain
Sec63	PF02889	635 - 949	1.7e-46	Sec63 Brl domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0010929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58720 AT3G58720 AT3G58720 AT3G58720
fragaria_vesca	FvH4_6g27790
malus_domestica	MD09G1234400.v1.1 MD17G1263500.v1.1
prunus_persica	Prupe.3G112600_v2.0.a1
pyrus_communis	pycom09g15270 pycom17g26370
rosa_chinensis	RchiOBHm_Chr2g0131091
rosa_laevigata	RLG00000019166
rosa_multiflora	Rmu_sc0003629.1_g000064
rosa_roxburghii	Rroxscaffold_2G00113210
rosa_rugosa	Rorug02G0294900
rosa_samantha	Rh2AG347200 Rh2BG354700 Rh2CG333400 Rh2DG372600
rosa_wichuraiana	Rw2G028190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1571
AarI	CACCTGC	1 cut(s)	1984
Acc36I	ACCTGC	3 cut(s)	1526, 1984, 3772
Acc65I	GGTACC	1 cut(s)	263
AccB1I	GGYRCC	2 cut(s)	263, 970
AccB7I	CCANNNNNTGG	1 cut(s)	2402
AccBSI	CCGCTC	1 cut(s)	1133
AccI	GTMKAC	2 cut(s)	314, 1488
AccII	CGCG	2 cut(s)	236, 736
AciI	CCGC	7 cut(s)	33, 68, 736, 956, 1131, 1676, 2612
AclWI	GGATC	6 cut(s)	628, 812, 1353, 2195, 2465, 3764
AcoI	YGGCCR	1 cut(s)	1541
AcsI	RAATTY	8 cut(s)	270, 719, 1389, 1943, 2028, 2285, 2732, 3466
AcuI	CTGAAG	2 cut(s)	3066, 3318
AcyI	GRCGYC	1 cut(s)	3179
AfaI	GTAC	7 cut(s)	265, 535, 1745, 1836, 1934, 2878, 3825
AfeI	AGCGCT	1 cut(s)	895
AflII	CTTAAG	2 cut(s)	320, 1373
AflIII	ACRYGT	1 cut(s)	530
AgeI	ACCGGT	1 cut(s)	260
AjnI	CCWGG	8 cut(s)	285, 674, 1765, 1912, 2229, 2395, 2697, 2841
AjuI	GAANNNNNNNTTGG	4 cut(s)	2808, 2840, 3867, 3899
AleI	CACNNNNGTG	2 cut(s)	1326, 3147
AloI	GAACNNNNNNTCC	2 cut(s)	3261, 3293
Alw21I	GWGCWC	5 cut(s)	648, 1400, 1736, 3241, 3447
Alw26I	GTCTC	4 cut(s)	1702, 2447, 2538, 2547
Alw44I	GTGCAC	1 cut(s)	1396
AlwI	GGATC	6 cut(s)	628, 812, 1353, 2195, 2465, 3764
Ama87I	CYCGRG	2 cut(s)	624, 2737
Aor51HI	AGCGCT	1 cut(s)	895
AoxI	GGCC	7 cut(s)	77, 1010, 1200, 1330, 1541, 2959, 3256
ApaLI	GTGCAC	1 cut(s)	1396
ApeKI	GCWGC	5 cut(s)	1172, 1858, 1986, 3089, 3401
ApoI	RAATTY	8 cut(s)	270, 719, 1389, 1943, 2028, 2285, 2732, 3466
AsiGI	ACCGGT	1 cut(s)	260
Asp700I	GAANNNNTTC	4 cut(s)	184, 399, 2973, 3879
Asp718I	GGTACC	1 cut(s)	263
AspA2I	CCTAGG	1 cut(s)	2474
AspLEI	GCGC	8 cut(s)	238, 445, 896, 1080, 1163, 2052, 2106, 2753
AspS9I	GGNCC	5 cut(s)	77, 606, 2960, 3008, 3257
AsuC2I	CCSGG	5 cut(s)	52, 86, 2588, 3260, 3681
AsuHPI	GGTGA	6 cut(s)	180, 1391, 2210, 2422, 2626, 3487
AsuNHI	GCTAGC	1 cut(s)	2608
AvaI	CYCGRG	2 cut(s)	624, 2737
AvaII	GGWCC	2 cut(s)	606, 3008
AvrII	CCTAGG	1 cut(s)	2474
AxyI	CCTNAGG	1 cut(s)	2922
BaeGI	GKGCMC	2 cut(s)	975, 1400
BaeI	ACNNNNGTAYC	2 cut(s)	189, 222
BanI	GGYRCC	2 cut(s)	263, 970
BanII	GRGCYC	3 cut(s)	648, 2744, 3216
BauI	CACGAG	2 cut(s)	822, 3240
BbsI	GAAGAC	2 cut(s)	120, 3045
Bbv12I	GWGCWC	5 cut(s)	648, 1400, 1736, 3241, 3447
BbvCI	CCTCAGC	2 cut(s)	2022, 2463
BbvI	GCAGC	5 cut(s)	1184, 1870, 1998, 3076, 3388
BceAI	ACGGC	2 cut(s)	2001, 3557
BcgI	CGANNNNNNTGC	2 cut(s)	2412, 2446
BciT130I	CCWGG	8 cut(s)	287, 676, 1767, 1914, 2231, 2397, 2699, 2843
BciVI	GTATCC	1 cut(s)	2031
BclI	TGATCA	1 cut(s)	3477
BcnI	CCSGG	5 cut(s)	52, 86, 2588, 3260, 3681
BcoDI	GTCTC	4 cut(s)	1702, 2447, 2538, 2547
BfmI	CTRYAG	5 cut(s)	1517, 1984, 2260, 2746, 3765
BfoI	RGCGCY	3 cut(s)	446, 897, 1081
BfrI	CTTAAG	2 cut(s)	320, 1373
BfuAI	ACCTGC	3 cut(s)	1526, 1984, 3772
BfuI	GTATCC	1 cut(s)	2031
BglI	GCCNNNNNGGC	1 cut(s)	76
BisI	GCNGC	5 cut(s)	1173, 1859, 1987, 3090, 3402
BlnI	CCTAGG	1 cut(s)	2474
BlpI	GCTNAGC	1 cut(s)	3397
BlsI	GCNGC	5 cut(s)	1174, 1860, 1988, 3091, 3403
BmcAI	AGTACT	1 cut(s)	1934
Bme18I	GGWCC	2 cut(s)	606, 3008
BmeT110I	CYCGRG	2 cut(s)	624, 2737
BmgT120I	GGNCC	5 cut(s)	77, 606, 2960, 3008, 3257
BmiI	GGNNCC	8 cut(s)	265, 345, 608, 972, 2317, 2519, 3010, 3700
BmrI	ACTGGG	1 cut(s)	3012
BmsI	GCATC	7 cut(s)	46, 715, 1870, 1987, 2264, 2319, 2595
BmtI	GCTAGC	1 cut(s)	2612
BmuI	ACTGGG	1 cut(s)	3012
BpiI	GAAGAC	2 cut(s)	120, 3045
BplI	GAGNNNNNCTC	2 cut(s)	3690, 3722
BpmI	CTGGAG	1 cut(s)	672
Bpu10I	CCTNAGC	4 cut(s)	1253, 2022, 2045, 2463
Bpu1102I	GCTNAGC	1 cut(s)	3397
BpuEI	CTTGAG	2 cut(s)	950, 1325
BpuMI	CCSGG	5 cut(s)	52, 86, 2588, 3260, 3681
BsaAI	YACGTR	3 cut(s)	533, 1747, 3149
BsaBI	GATNNNNATC	1 cut(s)	1350
BsaHI	GRCGYC	1 cut(s)	3179
BsaWI	WCCGGW	4 cut(s)	260, 266, 3472, 3638
BsaXI	ACNNNNNCTCC	6 cut(s)	2625, 2655, 3261, 3291, 3491, 3521
Bse118I	RCCGGY	2 cut(s)	260, 340
Bse1I	ACTGG	5 cut(s)	454, 655, 2200, 2500, 3018
Bse21I	CCTNAGG	1 cut(s)	2922
Bse3DI	GCAATG	2 cut(s)	2059, 3700
Bse8I	GATNNNNATC	1 cut(s)	1350
BseBI	CCWGG	8 cut(s)	287, 676, 1767, 1914, 2231, 2397, 2699, 2843
BseGI	GGATG	8 cut(s)	101, 523, 757, 1628, 1731, 2371, 3379, 3424
BseJI	GATNNNNATC	1 cut(s)	1350
BseMI	GCAATG	2 cut(s)	2059, 3700
BseNI	ACTGG	5 cut(s)	454, 655, 2200, 2500, 3018
BseRI	GAGGAG	1 cut(s)	3441
BseSI	GKGCMC	2 cut(s)	975, 1400
BseXI	GCAGC	5 cut(s)	1184, 1870, 1998, 3076, 3388
BseYI	CCCAGC	1 cut(s)	1048
Bsh1236I	CGCG	2 cut(s)	236, 736
Bsh1285I	CGRYCG	2 cut(s)	254, 261
BshFI	GGCC	7 cut(s)	79, 1012, 1202, 1332, 1543, 2961, 3258
BshNI	GGYRCC	2 cut(s)	263, 970
BshTI	ACCGGT	1 cut(s)	260
BsiEI	CGRYCG	2 cut(s)	254, 261
BsiHKAI	GWGCWC	5 cut(s)	648, 1400, 1736, 3241, 3447
BsiHKCI	CYCGRG	2 cut(s)	624, 2737
BslFI	GGGAC	1 cut(s)	2994
BsmAI	GTCTC	4 cut(s)	1702, 2447, 2538, 2547
BsmFI	GGGAC	1 cut(s)	2994
BsmI	GAATGC	2 cut(s)	401, 2588
BsnI	GGCC	7 cut(s)	79, 1012, 1202, 1332, 1543, 2961, 3258
BsoBI	CYCGRG	2 cut(s)	624, 2737
Bsp1286I	GDGCHC	8 cut(s)	648, 975, 1400, 1736, 2744, 3216, 3241, 3447
Bsp1407I	TGTACA	1 cut(s)	1834
Bsp1720I	GCTNAGC	1 cut(s)	3397
Bsp19I	CCATGG	1 cut(s)	327
BspACI	CCGC	7 cut(s)	33, 68, 736, 956, 1131, 1676, 2612
BspANI	GGCC	7 cut(s)	79, 1012, 1202, 1332, 1543, 2961, 3258
BspFNI	CGCG	2 cut(s)	236, 736
BspHI	TCATGA	3 cut(s)	1575, 2710, 3073
BspLI	GGNNCC	8 cut(s)	265, 345, 608, 972, 2317, 2519, 3010, 3700
BspMAI	CTGCAG	2 cut(s)	1988, 3769
BspMI	ACCTGC	3 cut(s)	1526, 1984, 3772
BspOI	GCTAGC	1 cut(s)	2612
BspPI	GGATC	6 cut(s)	628, 812, 1353, 2195, 2465, 3764
BspQI	GCTCTTC	1 cut(s)	2007
BspT107I	GGYRCC	2 cut(s)	263, 970
BspTI	CTTAAG	2 cut(s)	320, 1373
BsrBI	CCGCTC	1 cut(s)	1133
BsrDI	GCAATG	2 cut(s)	2059, 3700
BsrFI	RCCGGY	2 cut(s)	260, 340
BsrGI	TGTACA	1 cut(s)	1834
BsrI	ACTGG	5 cut(s)	454, 655, 2200, 2500, 3018
BssAI	RCCGGY	2 cut(s)	260, 340
BssNAI	GTATAC	1 cut(s)	315
BssNI	GRCGYC	1 cut(s)	3179
BssSI	CACGAG	2 cut(s)	822, 3240
BssT1I	CCWWGG	5 cut(s)	327, 979, 2474, 3216, 3830
Bst1107I	GTATAC	1 cut(s)	315
Bst2BI	CACGAG	2 cut(s)	822, 3240
Bst2UI	CCWGG	8 cut(s)	287, 676, 1767, 1914, 2231, 2397, 2699, 2843
Bst6I	CTCTTC	5 cut(s)	190, 226, 1579, 2007, 2916
BstACI	GRCGYC	1 cut(s)	3179
BstAFI	CTTAAG	2 cut(s)	320, 1373
BstAPI	GCANNNNNTGC	2 cut(s)	43, 636
BstAUI	TGTACA	1 cut(s)	1834
BstBAI	YACGTR	3 cut(s)	533, 1747, 3149
BstC8I	GCNNGC	8 cut(s)	35, 230, 234, 342, 867, 2102, 2610, 3778
BstDSI	CCRYGG	1 cut(s)	327
BstENI	CCTNNNNNAGG	1 cut(s)	2228
BstF5I	GGATG	8 cut(s)	101, 523, 757, 1628, 1731, 2371, 3379, 3424
BstFNI	CGCG	2 cut(s)	236, 736
BstH2I	RGCGCY	3 cut(s)	446, 897, 1081
BstHHI	GCGC	8 cut(s)	238, 445, 896, 1080, 1163, 2052, 2106, 2753
BstMAI	GTCTC	4 cut(s)	1702, 2447, 2538, 2547
BstMCI	CGRYCG	2 cut(s)	254, 261
BstNI	CCWGG	8 cut(s)	287, 676, 1767, 1914, 2231, 2397, 2699, 2843
BstNSI	RCATGY	2 cut(s)	360, 3724
BstSFI	CTRYAG	5 cut(s)	1517, 1984, 2260, 2746, 3765
BstSLI	GKGCMC	2 cut(s)	975, 1400
BstUI	CGCG	2 cut(s)	236, 736
BstV1I	GCAGC	5 cut(s)	1184, 1870, 1998, 3076, 3388
BstV2I	GAAGAC	2 cut(s)	120, 3045
BstX2I	RGATCY	2 cut(s)	620, 3769
BstXI	CCANNNNNNTGG	1 cut(s)	617
BstYI	RGATCY	2 cut(s)	620, 3769
BstZ17I	GTATAC	1 cut(s)	315
Bsu36I	CCTNAGG	1 cut(s)	2922
BsuI	GTATCC	1 cut(s)	2031
BsuRI	GGCC	7 cut(s)	79, 1012, 1202, 1332, 1543, 2961, 3258
BtgI	CCRYGG	1 cut(s)	327
BtsCI	GGATG	8 cut(s)	101, 523, 757, 1628, 1731, 2371, 3379, 3424
BtsI	GCAGTG	3 cut(s)	1282, 1511, 3835
BtsIMutI	CAGTG	8 cut(s)	648, 1282, 1511, 2082, 2493, 2618, 3780, 3835
BveI	ACCTGC	3 cut(s)	1526, 1984, 3772
Cac8I	GCNNGC	8 cut(s)	35, 230, 234, 342, 867, 2102, 2610, 3778
CciI	TCATGA	3 cut(s)	1575, 2710, 3073
CfoI	GCGC	8 cut(s)	238, 445, 896, 1080, 1163, 2052, 2106, 2753
Cfr10I	RCCGGY	2 cut(s)	260, 340
Cfr13I	GGNCC	5 cut(s)	77, 606, 2960, 3008, 3257
CseI	GACGC	1 cut(s)	3168
CsiI	ACCWGGT	1 cut(s)	2697
Csp6I	GTAC	7 cut(s)	264, 534, 1744, 1835, 1933, 2877, 3824
CspAI	ACCGGT	1 cut(s)	260
CspCI	CAANNNNNGTGG	4 cut(s)	3477, 3512, 3765, 3800
CviQI	GTAC	7 cut(s)	264, 534, 1744, 1835, 1933, 2877, 3824
EaeI	YGGCCR	1 cut(s)	1541
Eam1104I	CTCTTC	5 cut(s)	190, 226, 1579, 2007, 2916
EarI	CTCTTC	5 cut(s)	190, 226, 1579, 2007, 2916
Ecl136II	GAGCTC	1 cut(s)	646
Eco130I	CCWWGG	5 cut(s)	327, 979, 2474, 3216, 3830
Eco147I	AGGCCT	1 cut(s)	1012
Eco24I	GRGCYC	3 cut(s)	648, 2744, 3216
Eco32I	GATATC	2 cut(s)	1102, 3736
Eco47I	GGWCC	2 cut(s)	606, 3008
Eco47III	AGCGCT	1 cut(s)	895
Eco53kI	GAGCTC	1 cut(s)	646
Eco57I	CTGAAG	2 cut(s)	3066, 3318
Eco81I	CCTNAGG	1 cut(s)	2922
Eco88I	CYCGRG	2 cut(s)	624, 2737
EcoICRI	GAGCTC	1 cut(s)	646
EcoNI	CCTNNNNNAGG	1 cut(s)	2228
EcoRI	GAATTC	1 cut(s)	2732
EcoRII	CCWGG	8 cut(s)	285, 674, 1765, 1912, 2229, 2395, 2697, 2841
EcoRV	GATATC	2 cut(s)	1102, 3736
EcoT14I	CCWWGG	5 cut(s)	327, 979, 2474, 3216, 3830
EcoT22I	ATGCAT	1 cut(s)	2279
EcoT38I	GRGCYC	3 cut(s)	648, 2744, 3216
ErhI	CCWWGG	5 cut(s)	327, 979, 2474, 3216, 3830
FalI	AAGNNNNNCTT	6 cut(s)	792, 824, 1246, 1278, 1986, 2018
FaqI	GGGAC	1 cut(s)	2994
FauI	CCCGC	2 cut(s)	26, 75
FauNDI	CATATG	3 cut(s)	1818, 2246, 2512
FbaI	TGATCA	1 cut(s)	3477
FblI	GTMKAC	2 cut(s)	314, 1488
Fnu4HI	GCNGC	5 cut(s)	1173, 1859, 1987, 3090, 3402
FokI	GGATG	8 cut(s)	88, 530, 764, 1635, 1738, 2378, 3366, 3431
FriOI	GRGCYC	3 cut(s)	648, 2744, 3216
Fsp4HI	GCNGC	5 cut(s)	1173, 1859, 1987, 3090, 3402
GlaI	GCGC	8 cut(s)	237, 444, 895, 1079, 1162, 2051, 2105, 2752
GluI	GCNGC	5 cut(s)	1173, 1859, 1987, 3090, 3402
GsaI	CCCAGC	1 cut(s)	1052
GsuI	CTGGAG	1 cut(s)	672
HaeII	RGCGCY	3 cut(s)	446, 897, 1081
HaeIII	GGCC	7 cut(s)	79, 1012, 1202, 1332, 1543, 2961, 3258
HgaI	GACGC	1 cut(s)	3168
HhaI	GCGC	8 cut(s)	238, 445, 896, 1080, 1163, 2052, 2106, 2753
Hin1I	GRCGYC	1 cut(s)	3179
Hin6I	GCGC	8 cut(s)	236, 443, 894, 1078, 1161, 2050, 2104, 2751
HinP1I	GCGC	8 cut(s)	236, 443, 894, 1078, 1161, 2050, 2104, 2751
HincII	GTYRAC	1 cut(s)	3846
HindII	GTYRAC	1 cut(s)	3846
HindIII	AAGCTT	5 cut(s)	576, 1260, 2063, 3026, 3251
HphI	GGTGA	6 cut(s)	180, 1391, 2210, 2422, 2626, 3487
Hpy166II	GTNNAC	9 cut(s)	315, 427, 528, 683, 1398, 1489, 1597, 1835, 3846
Hpy8I	GTNNAC	9 cut(s)	315, 427, 528, 683, 1398, 1489, 1597, 1835, 3846
Hpy99I	CGWCG	2 cut(s)	259, 2989
HpyAV	CCTTC	5 cut(s)	142, 586, 1091, 2214, 2951
HpyCH4IV	ACGT	5 cut(s)	532, 1746, 3148, 3235, 3411
HpySE526I	ACGT	5 cut(s)	532, 1746, 3148, 3235, 3411
Hsp92I	GRCGYC	1 cut(s)	3179
HspAI	GCGC	8 cut(s)	236, 443, 894, 1078, 1161, 2050, 2104, 2751
KpnI	GGTACC	1 cut(s)	267
KroI	GCCGGC	1 cut(s)	340
KroNI	GCCGGC	1 cut(s)	342
Ksp22I	TGATCA	1 cut(s)	3477
LguI	GCTCTTC	1 cut(s)	2007
LmnI	GCTCC	8 cut(s)	349, 643, 827, 1663, 2315, 2845, 3650, 3698
Lsp1109I	GCAGC	5 cut(s)	1184, 1870, 1998, 3076, 3388
LweI	GCATC	7 cut(s)	46, 715, 1870, 1987, 2264, 2319, 2595
MabI	ACCWGGT	1 cut(s)	2697
MaeII	ACGT	5 cut(s)	532, 1746, 3148, 3235, 3411
MaeIII	GTNAC	7 cut(s)	730, 1277, 2410, 2491, 2614, 3118, 3716
MbiI	CCGCTC	1 cut(s)	1133
MfeI	CAATTG	2 cut(s)	1643, 3819
MflI	RGATCY	2 cut(s)	620, 3769
MhlI	GDGCHC	8 cut(s)	648, 975, 1400, 1736, 2744, 3216, 3241, 3447
MlyI	GAGTC	5 cut(s)	163, 1494, 2540, 3035, 3515
MmeI	TCCRAC	2 cut(s)	3407, 3835
Mph1103I	ATGCAT	1 cut(s)	2279
MroNI	GCCGGC	1 cut(s)	340
MroXI	GAANNNNTTC	4 cut(s)	184, 399, 2973, 3879
MslI	CAYNNNNRTG	7 cut(s)	420, 434, 1270, 1326, 1602, 3078, 3147
MspA1I	CMGCKG	1 cut(s)	3401
MspCI	CTTAAG	2 cut(s)	320, 1373
MunI	CAATTG	2 cut(s)	1643, 3819
Mva1269I	GAATGC	2 cut(s)	401, 2588
MvaI	CCWGG	8 cut(s)	287, 676, 1767, 1914, 2231, 2397, 2699, 2843
MvnI	CGCG	2 cut(s)	236, 736
NaeI	GCCGGC	1 cut(s)	342
NciI	CCSGG	5 cut(s)	52, 86, 2588, 3260, 3681
NcoI	CCATGG	1 cut(s)	327
NdeI	CATATG	3 cut(s)	1818, 2246, 2512
NgoMIV	GCCGGC	1 cut(s)	340
NheI	GCTAGC	1 cut(s)	2608
NlaIV	GGNNCC	8 cut(s)	265, 345, 608, 972, 2317, 2519, 3010, 3700
NmuCI	GTSAC	5 cut(s)	1277, 2410, 2491, 2614, 3118
NsiI	ATGCAT	1 cut(s)	2279
NspI	RCATGY	2 cut(s)	360, 3724
OliI	CACNNNNGTG	2 cut(s)	1326, 3147
PaeR7I	CTCGAG	1 cut(s)	2737
PagI	TCATGA	3 cut(s)	1575, 2710, 3073
PaqCI	CACCTGC	1 cut(s)	1984
PceI	AGGCCT	1 cut(s)	1012
PciSI	GCTCTTC	1 cut(s)	2007
PctI	GAATGC	2 cut(s)	401, 2588
PdiI	GCCGGC	1 cut(s)	342
PdmI	GAANNNNTTC	4 cut(s)	184, 399, 2973, 3879
PfeI	GAWTC	7 cut(s)	308, 504, 662, 1422, 1609, 1637, 3751
PflMI	CCANNNNNTGG	1 cut(s)	2402
PfoI	TCCNGGA	2 cut(s)	285, 3679
PinAI	ACCGGT	1 cut(s)	260
PkrI	GCNGC	5 cut(s)	1174, 1860, 1988, 3091, 3403
Ple19I	CGATCG	1 cut(s)	254
PleI	GAGTC	5 cut(s)	162, 1493, 2539, 3035, 3514
PpsI	GAGTC	5 cut(s)	162, 1493, 2539, 3035, 3514
Ppu21I	YACGTR	3 cut(s)	533, 1747, 3149
PsiI	TTATAA	1 cut(s)	1571
Psp124BI	GAGCTC	1 cut(s)	648
Psp6I	CCWGG	8 cut(s)	285, 674, 1765, 1912, 2229, 2395, 2697, 2841
PspFI	CCCAGC	1 cut(s)	1048
PspGI	CCWGG	8 cut(s)	285, 674, 1765, 1912, 2229, 2395, 2697, 2841
PspN4I	GGNNCC	8 cut(s)	265, 345, 608, 972, 2317, 2519, 3010, 3700
PspPI	GGNCC	5 cut(s)	77, 606, 2960, 3008, 3257
PstI	CTGCAG	2 cut(s)	1988, 3769
PsuI	RGATCY	2 cut(s)	620, 3769
PvuI	CGATCG	1 cut(s)	254
PvuII	CAGCTG	1 cut(s)	3401
RsaI	GTAC	7 cut(s)	265, 535, 1745, 1836, 1934, 2878, 3825
RsaNI	GTAC	7 cut(s)	264, 534, 1744, 1835, 1933, 2877, 3824
RseI	CAYNNNNRTG	7 cut(s)	420, 434, 1270, 1326, 1602, 3078, 3147
SacI	GAGCTC	1 cut(s)	648
SapI	GCTCTTC	1 cut(s)	2007
SatI	GCNGC	5 cut(s)	1173, 1859, 1987, 3090, 3402
Sau96I	GGNCC	5 cut(s)	77, 606, 2960, 3008, 3257
ScaI	AGTACT	1 cut(s)	1934
SchI	GAGTC	5 cut(s)	163, 1494, 2540, 3035, 3515
SduI	GDGCHC	8 cut(s)	648, 975, 1400, 1736, 2744, 3216, 3241, 3447
SexAI	ACCWGGT	1 cut(s)	2697
SfaNI	GCATC	7 cut(s)	46, 715, 1870, 1987, 2264, 2319, 2595
SfcI	CTRYAG	5 cut(s)	1517, 1984, 2260, 2746, 3765
Sfr274I	CTCGAG	1 cut(s)	2737
SinI	GGWCC	2 cut(s)	606, 3008
SlaI	CTCGAG	1 cut(s)	2737
SmiMI	CAYNNNNRTG	7 cut(s)	420, 434, 1270, 1326, 1602, 3078, 3147
SmlI	CTYRAG	5 cut(s)	320, 965, 1340, 1373, 2737
SmoI	CTYRAG	5 cut(s)	320, 965, 1340, 1373, 2737
SseBI	AGGCCT	1 cut(s)	1012
SsiI	CCGC	7 cut(s)	33, 68, 736, 956, 1131, 1676, 2612
SspI	AATATT	4 cut(s)	943, 1115, 3438, 3666
SstI	GAGCTC	1 cut(s)	648
StuI	AGGCCT	1 cut(s)	1012
StyI	CCWWGG	5 cut(s)	327, 979, 2474, 3216, 3830
TaiI	ACGT	5 cut(s)	535, 1749, 3151, 3238, 3414
TaqII	GACCGA	1 cut(s)	1518
TatI	WGTACW	3 cut(s)	1834, 1932, 2876
TfiI	GAWTC	7 cut(s)	308, 504, 662, 1422, 1609, 1637, 3751
TscAI	CASTG	8 cut(s)	655, 1282, 1518, 2089, 2500, 2625, 3787, 3842
TseFI	GTSAC	5 cut(s)	1277, 2410, 2491, 2614, 3118
TseI	GCWGC	5 cut(s)	1172, 1858, 1986, 3089, 3401
Tsp45I	GTSAC	5 cut(s)	1277, 2410, 2491, 2614, 3118
TspGWI	ACGGA	1 cut(s)	1676
TspRI	CASTG	8 cut(s)	655, 1282, 1518, 2089, 2500, 2625, 3787, 3842
Van91I	CCANNNNNTGG	1 cut(s)	2402
Vha464I	CTTAAG	2 cut(s)	320, 1373
VneI	GTGCAC	1 cut(s)	1396
VpaK11BI	GGWCC	2 cut(s)	606, 3008
XagI	CCTNNNNNAGG	1 cut(s)	2228
XapI	RAATTY	8 cut(s)	270, 719, 1389, 1943, 2028, 2285, 2732, 3466
XbaI	TCTAGA	1 cut(s)	3031
XceI	RCATGY	2 cut(s)	360, 3724
XhoI	CTCGAG	1 cut(s)	2737
XmaJI	CCTAGG	1 cut(s)	2474
XmiI	GTMKAC	2 cut(s)	314, 1488
XmnI	GAANNNNTTC	4 cut(s)	184, 399, 2973, 3879
ZrmI	AGTACT	1 cut(s)	1934
Zsp2I	ATGCAT	1 cut(s)	2279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.