Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010929

Physical Location & Seq

Genomic Coordinates Forward (+)

38731453 .. 38733529

Gene Structure 2077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00113210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGACGAGCAGAAGAACCAACTCTAACACTTCAGCCACAGTTTATCCGAGACTTGCCTACCCTCCTCCTCCTCCTCCTTCTCCTCCTTCTCGTACCCATGATAATCTATATGGCTACTATTTTCCTTCTCCTCCTCCACCGTCCCTTTCTTCTCCTCATCCGCCCTCCCTTTCTTCTCTTAACCATCTTACTCCATATGACTACTATTTTTCAATTGATGATGATGATGTTAATGATCACTGGCATTTCGAGGAACCTGTTCAGCCCCTGTCAAATACCTTCCAAGTCACCCGAGTAAGTAAATACTCTCTCTCTCTCACTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATCAGATCCCATCCAGAGCGGAGGTCCGCTTTGAAATTAAAGTGTGAACTTCGAGTTTTGGTTCGCTTTTCGATCGCATATCCAGATCTCGACCGTTCAGTTTTTAGCTCACTAGCACCACCAGGTTCCCGAATTCATGCTTTGCTCCTCGACAATCCAAGGACTAGACAGATCCTCAGCGGCCAATGGACTCTGGCAGCTCCTAGACAGGAAGCCGACTCCAGGTTGACCTATAATGAGCAAAAGAAGGCATTGCAGAAGCTCAGGAAGCAGATATACAATCCTTCACGGAGAATATCGCCTACGGTCAACTTGTATTATAGAGGCACTCCTGTTCAAGACAGTGGCATAGGAAGAAATGAGGGTAAGAGGTGTACCATTTGCTTGGAAGATTTTGAGCCTAAAGAAGAGGTTATGCTCACCCCATGTAACCATATGTTTCATGAGGAATGCATTGTGCCATGGGTCAAGAGCAACGGTCGGTGCCCGGTCTGTAGGTATGGGATAAGTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

292

Amino Acids

33.53

Weight (kDa)

8.99

Isoelectric Point (pI)

61.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	237 - 287	4e-10	RING-H2 zinc finger domain
zf-C3HC4_3	PF13920	243 - 290	1.3e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	245 - 287	1.3e-15	Ring finger domain
zf-C3HC4_2	PF13923	245 - 286	2.2e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	245 - 287	1.6e-08	zinc-RING finger domain
zf-RING_11	PF17123	246 - 273	3.8e-12	RING-like zinc finger
zf-C3HC4	PF00097	246 - 286	9.3e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	246 - 284	1.8e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58720 AT3G58720 AT3G58720 AT3G58720
fragaria_vesca	FvH4_6g27790
malus_domestica	MD09G1234400.v1.1 MD17G1263500.v1.1
prunus_persica	Prupe.3G112600_v2.0.a1
pyrus_communis	pycom09g15270 pycom17g26370
rosa_chinensis	RchiOBHm_Chr2g0131091
rosa_laevigata	RLG00000019166
rosa_multiflora	Rmu_sc0003629.1_g000064
rosa_roxburghii	Rroxscaffold_2G00113210
rosa_rugosa	Rorug02G0294900
rosa_samantha	Rh2AG347200 Rh2BG354700 Rh2CG333400 Rh2DG372600
rosa_wichuraiana	Rw2G028190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	846
AccBSI	CCGCTC	1 cut(s)	382
AciI	CCGC	4 cut(s)	161, 382, 390, 543
AclWI	GGATC	2 cut(s)	363, 529
AcoI	YGGCCR	1 cut(s)	544
AcsI	RAATTY	1 cut(s)	495
AcuI	CTGAAG	1 cut(s)	15
AfaI	GTAC	2 cut(s)	94, 739
AfiI	CCNNNNNNNGG	1 cut(s)	585
AgsI	TTSAA	3 cut(s)	213, 397, 701
AjnI	CCWGG	2 cut(s)	484, 584
AluBI	AGCT	3 cut(s)	471, 563, 625
AluI	AGCT	3 cut(s)	471, 563, 625
Alw26I	GTCTC	1 cut(s)	43
AlwI	GGATC	2 cut(s)	363, 529
AlwNI	CAGNNNCTG	1 cut(s)	268
Ama87I	CYCGRG	1 cut(s)	291
AoxI	GGCC	1 cut(s)	544
ApeKI	GCWGC	1 cut(s)	560
ApoI	RAATTY	1 cut(s)	495
Asp700I	GAANNNNTTC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	387
AsuC2I	CCSGG	1 cut(s)	851
AsuHPI	GGTGA	2 cut(s)	280, 775
AvaI	CYCGRG	1 cut(s)	291
AvaII	GGWCC	1 cut(s)	387
BaeGI	GKGCMC	1 cut(s)	851
BanI	GGYRCC	1 cut(s)	846
BarI	GAAGNNNNNNTAC	2 cut(s)	623, 655
BbvCI	CCTCAGC	1 cut(s)	539
BbvI	GCAGC	1 cut(s)	572
BccI	CCATC	2 cut(s)	192, 381
BciT130I	CCWGG	2 cut(s)	486, 586
BclI	TGATCA	1 cut(s)	235
BcnI	CCSGG	1 cut(s)	851
BcoDI	GTCTC	1 cut(s)	43
BfaI	CTAG	3 cut(s)	476, 528, 567
BfmI	CTRYAG	1 cut(s)	856
BglII	AGATCT	1 cut(s)	448
BisI	GCNGC	2 cut(s)	544, 561
BlsI	GCNGC	2 cut(s)	545, 562
Bme1390I	CCNGG	3 cut(s)	486, 586, 851
Bme18I	GGWCC	1 cut(s)	387
BmeT110I	CYCGRG	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	387
BmiI	GGNNCC	3 cut(s)	255, 490, 848
BmrFI	CCNGG	3 cut(s)	486, 586, 851
BpmI	CTGGAG	1 cut(s)	568
Bpu10I	CCTNAGC	2 cut(s)	539, 626
BpuMI	CCSGG	1 cut(s)	851
BsaJI	CCNNGG	2 cut(s)	521, 824
Bsc4I	CCNNNNNNNGG	1 cut(s)	585
Bse1I	ACTGG	1 cut(s)	245
Bse3DI	GCAATG	1 cut(s)	614
BseBI	CCWGG	2 cut(s)	486, 586
BseDI	CCNNGG	2 cut(s)	521, 824
BseGI	GGATG	2 cut(s)	157, 373
BseLI	CCNNNNNNNGG	1 cut(s)	585
BseMI	GCAATG	1 cut(s)	614
BseMII	CTCAG	2 cut(s)	553, 640
BseNI	ACTGG	1 cut(s)	245
BseRI	GAGGAG	9 cut(s)	54, 57, 60, 63, 72, 120, 123, 144, 500
BseSI	GKGCMC	1 cut(s)	851
BseXI	GCAGC	1 cut(s)	572
Bsh1285I	CGRYCG	3 cut(s)	438, 457, 844
BshFI	GGCC	1 cut(s)	546
BshNI	GGYRCC	1 cut(s)	846
BsiEI	CGRYCG	3 cut(s)	438, 457, 844
BsiHKCI	CYCGRG	1 cut(s)	291
BsiSI	CCGG	1 cut(s)	851
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	585
BsmAI	GTCTC	1 cut(s)	43
BsmFI	GGGAC	1 cut(s)	127
BsmI	GAATGC	1 cut(s)	818
BsnI	GGCC	1 cut(s)	546
BsoBI	CYCGRG	1 cut(s)	291
Bsp1286I	GDGCHC	1 cut(s)	851
Bsp143I	GATC	5 cut(s)	235, 368, 435, 448, 534
Bsp19I	CCATGG	1 cut(s)	824
BspACI	CCGC	4 cut(s)	161, 382, 390, 543
BspANI	GGCC	1 cut(s)	546
BspCNI	CTCAG	2 cut(s)	552, 639
BspHI	TCATGA	1 cut(s)	805
BspLI	GGNNCC	3 cut(s)	255, 490, 848
BspPI	GGATC	2 cut(s)	363, 529
BspT107I	GGYRCC	1 cut(s)	846
BsrBI	CCGCTC	1 cut(s)	382
BsrDI	GCAATG	1 cut(s)	614
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	2 cut(s)	521, 824
BssMI	GATC	5 cut(s)	235, 368, 435, 448, 534
BssT1I	CCWWGG	2 cut(s)	521, 824
Bst2UI	CCWGG	2 cut(s)	486, 586
Bst4CI	ACNGT	6 cut(s)	40, 141, 458, 670, 707, 842
Bst6I	CTCTTC	1 cut(s)	765
BstDEI	CTNAG	2 cut(s)	539, 626
BstDSI	CCRYGG	1 cut(s)	824
BstF5I	GGATG	2 cut(s)	157, 373
BstKTI	GATC	5 cut(s)	238, 371, 438, 451, 537
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	5 cut(s)	235, 368, 435, 448, 534
BstMCI	CGRYCG	3 cut(s)	438, 457, 844
BstMWI	GCNNNNNNNGC	1 cut(s)	631
BstNI	CCWGG	2 cut(s)	486, 586
BstSCI	CCNGG	3 cut(s)	484, 584, 849
BstSFI	CTRYAG	1 cut(s)	856
BstSLI	GKGCMC	1 cut(s)	851
BstV1I	GCAGC	1 cut(s)	572
BstX2I	RGATCY	3 cut(s)	368, 448, 534
BstXI	CCANNNNNNTGG	1 cut(s)	748
BstYI	RGATCY	3 cut(s)	368, 448, 534
BsuRI	GGCC	1 cut(s)	546
BtgI	CCRYGG	1 cut(s)	824
BtsCI	GGATG	2 cut(s)	157, 373
BtsIMutI	CAGTG	2 cut(s)	238, 712
CaiI	CAGNNNCTG	1 cut(s)	268
CciI	TCATGA	1 cut(s)	805
Cfr13I	GGNCC	1 cut(s)	387
CsiI	ACCWGGT	1 cut(s)	484
Csp6I	GTAC	2 cut(s)	93, 738
CviAII	CATG	5 cut(s)	98, 500, 789, 806, 825
CviJI	RGCY	9 cut(s)	35, 114, 265, 471, 546, 563, 578, 625, 763
CviKI_1	RGCY	9 cut(s)	35, 114, 265, 471, 546, 563, 578, 625, 763
CviQI	GTAC	2 cut(s)	93, 738
DdeI	CTNAG	2 cut(s)	539, 626
DpnI	GATC	5 cut(s)	237, 370, 437, 450, 536
DpnII	GATC	5 cut(s)	235, 368, 435, 448, 534
EaeI	YGGCCR	1 cut(s)	544
Eam1104I	CTCTTC	1 cut(s)	765
EarI	CTCTTC	1 cut(s)	765
EciI	GGCGGA	1 cut(s)	150
Eco130I	CCWWGG	2 cut(s)	521, 824
Eco47I	GGWCC	1 cut(s)	387
Eco57I	CTGAAG	1 cut(s)	15
Eco88I	CYCGRG	1 cut(s)	291
EcoRI	GAATTC	1 cut(s)	495
EcoRII	CCWGG	2 cut(s)	484, 584
EcoT14I	CCWWGG	2 cut(s)	521, 824
EcoT22I	ATGCAT	1 cut(s)	818
ErhI	CCWWGG	2 cut(s)	521, 824
FaeI	CATG	5 cut(s)	101, 503, 792, 809, 828
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	5 cut(s)	97, 499, 788, 805, 824
FauNDI	CATATG	2 cut(s)	196, 798
FbaI	TGATCA	1 cut(s)	235
Fnu4HI	GCNGC	2 cut(s)	544, 561
FokI	GGATG	2 cut(s)	144, 360
Fsp4HI	GCNGC	2 cut(s)	544, 561
FspBI	CTAG	3 cut(s)	476, 528, 567
GluI	GCNGC	2 cut(s)	544, 561
GsuI	CTGGAG	1 cut(s)	568
HaeIII	GGCC	1 cut(s)	546
HapII	CCGG	1 cut(s)	851
Hin1II	CATG	5 cut(s)	101, 503, 792, 809, 828
HincII	GTYRAC	2 cut(s)	591, 673
HindII	GTYRAC	2 cut(s)	591, 673
HinfI	GANTC	2 cut(s)	553, 581
HpaII	CCGG	1 cut(s)	851
HphI	GGTGA	2 cut(s)	280, 775
Hpy166II	GTNNAC	4 cut(s)	410, 591, 673, 738
Hpy188I	TCNGA	2 cut(s)	48, 368
Hpy188III	TCNNGA	8 cut(s)	377, 446, 452, 492, 628, 701, 806, 832
Hpy8I	GTNNAC	4 cut(s)	410, 591, 673, 738
HpyAV	CCTTC	6 cut(s)	87, 96, 135, 289, 604, 657
HpyCH4III	ACNGT	6 cut(s)	40, 141, 458, 670, 707, 842
HpyCH4V	TGCA	2 cut(s)	619, 816
HpyF10VI	GCNNNNNNNGC	1 cut(s)	631
HpyF3I	CTNAG	2 cut(s)	539, 626
Hsp92II	CATG	5 cut(s)	101, 503, 792, 809, 828
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	5 cut(s)	235, 368, 435, 448, 534
LmnI	GCTCC	2 cut(s)	513, 568
Lsp1109I	GCAGC	1 cut(s)	572
MabI	ACCWGGT	1 cut(s)	484
MaeI	CTAG	3 cut(s)	476, 528, 567
MaeIII	GTNAC	3 cut(s)	286, 791, 872
MalI	GATC	5 cut(s)	237, 370, 437, 450, 536
MbiI	CCGCTC	1 cut(s)	382
MboI	GATC	5 cut(s)	235, 368, 435, 448, 534
MboII	GAAGA	6 cut(s)	24, 141, 165, 729, 764, 782
MfeI	CAATTG	1 cut(s)	213
MflI	RGATCY	3 cut(s)	368, 448, 534
MhlI	GDGCHC	1 cut(s)	851
MluCI	AATT	3 cut(s)	213, 398, 495
MlyI	GAGTC	2 cut(s)	547, 575
Mph1103I	ATGCAT	1 cut(s)	818
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	3 cut(s)	180, 231, 401
MspA1I	CMGCKG	1 cut(s)	543
MspI	CCGG	1 cut(s)	851
MspR9I	CCNGG	3 cut(s)	486, 586, 851
MunI	CAATTG	1 cut(s)	213
Mva1269I	GAATGC	1 cut(s)	818
MvaI	CCWGG	2 cut(s)	486, 586
MwoI	GCNNNNNNNGC	1 cut(s)	631
NciI	CCSGG	1 cut(s)	851
NcoI	CCATGG	1 cut(s)	824
NdeI	CATATG	2 cut(s)	196, 798
NdeII	GATC	5 cut(s)	235, 368, 435, 448, 534
NlaIII	CATG	5 cut(s)	101, 503, 792, 809, 828
NlaIV	GGNNCC	3 cut(s)	255, 490, 848
NmuCI	GTSAC	2 cut(s)	286, 872
NsiI	ATGCAT	1 cut(s)	818
PagI	TCATGA	1 cut(s)	805
PctI	GAATGC	1 cut(s)	818
PdmI	GAANNNNTTC	1 cut(s)	258
PkrI	GCNGC	2 cut(s)	545, 562
Ple19I	CGATCG	1 cut(s)	438
PleI	GAGTC	2 cut(s)	547, 575
PpsI	GAGTC	2 cut(s)	547, 575
Psp6I	CCWGG	2 cut(s)	484, 584
PspGI	CCWGG	2 cut(s)	484, 584
PspN4I	GGNNCC	3 cut(s)	255, 490, 848
PspPI	GGNCC	1 cut(s)	387
PstNI	CAGNNNCTG	1 cut(s)	268
PsuI	RGATCY	3 cut(s)	368, 448, 534
PvuI	CGATCG	1 cut(s)	438
RsaI	GTAC	2 cut(s)	94, 739
RsaNI	GTAC	2 cut(s)	93, 738
SaqAI	TTAA	3 cut(s)	180, 231, 401
SatI	GCNGC	2 cut(s)	544, 561
Sau3AI	GATC	5 cut(s)	235, 368, 435, 448, 534
Sau96I	GGNCC	1 cut(s)	387
SchI	GAGTC	2 cut(s)	547, 575
ScrFI	CCNGG	3 cut(s)	486, 586, 851
SduI	GDGCHC	1 cut(s)	851
SexAI	ACCWGGT	1 cut(s)	484
SfcI	CTRYAG	1 cut(s)	856
SinI	GGWCC	1 cut(s)	387
Sse9I	AATT	3 cut(s)	213, 398, 495
SsiI	CCGC	4 cut(s)	161, 382, 390, 543
SspMI	CTAG	3 cut(s)	476, 528, 567
StyD4I	CCNGG	3 cut(s)	484, 584, 849
StyI	CCWWGG	2 cut(s)	521, 824
TaaI	ACNGT	6 cut(s)	40, 141, 458, 670, 707, 842
TaqI	TCGA	5 cut(s)	249, 415, 434, 453, 513
TasI	AATT	3 cut(s)	213, 398, 495
TauI	GCSGC	1 cut(s)	546
Tru1I	TTAA	3 cut(s)	180, 231, 401
Tru9I	TTAA	3 cut(s)	180, 231, 401
TscAI	CASTG	2 cut(s)	245, 712
TseFI	GTSAC	2 cut(s)	286, 872
TseI	GCWGC	1 cut(s)	560
Tsp45I	GTSAC	2 cut(s)	286, 872
TspDTI	ATGAA	2 cut(s)	488, 794
TspGWI	ACGGA	1 cut(s)	667
TspRI	CASTG	2 cut(s)	245, 712
VpaK11BI	GGWCC	1 cut(s)	387
XapI	RAATTY	1 cut(s)	495
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	3 cut(s)	476, 528, 567
Zsp2I	ATGCAT	1 cut(s)	818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.