MD09G1234400.v1.1

zinc-RING finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0010929
Physical Location & Seq
Forward (+)
29455416 .. 29456704
1289 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1234400.v1.1.491

Sequence Viewer

Length: 675 bp
ATGAGCAGTACCAACAATGCCTACTCTCCTCCTCTTCCTCTTCCTCATCCTCGTCTAACCTACCATGAGCCGCTTGACTTCTTCTTCGGGATTTTTGAGGACGATGATGGTGAATGGGCTTTTGGGAACCCTGTTGCTCCCCTGTACGATAATTTTCAAGACACTCGGGTTACCAGAACGGGTGCGTCGGATTCAAGGCGACCATTTGAGGGAACGCTAGCACTTGCAAGACCTCCTGGCTTAGCAGGTTCAGCAGCAGCACCAGGTTCCCGAATTCATATTCTGGTCCTTGACGATGAAATGGCAAGACAGGCAAACCCTAGACAGATGATCGGCAGACAATGGAATACGGCCTCCCCTAGACTTGAAGCAGACTCCAGATTGACCCGTGACGAGCAAAAGATGGCATTGCAGAAGCTGAAGAAAGAGATATACAATCCTTTTCGAAGAATATCGCAGAGGGTGAACTTGTATTACAGAGACACAGTTGTGAATGAGGAGGAAATGGAGAATGATGAAAATAGCAAGAGGTGTGCCATTTGCTTGGAAGACTTTGAGCCCAAACAAGAGGTTATGCTCACTCCTTGTAAGCATATGTTTCATGAAGAATGCATTGTGCCTTGGGTGAAAAGCAATGGTCATTGCCCAGTCTGTAGGTTTTCTATATCTCAGTAA

Protein Analysis

225

Amino Acids

25.7

Weight (kDa)

5.73

Isoelectric Point (pI)

55.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 175 - 223 3.6e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 177 - 219 4.1e-15 Ring finger domain
zf-C3HC4_2 PF13923 177 - 218 1.4e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 177 - 219 4.7e-08 zinc-RING finger domain
zf-RING_11 PF17123 178 - 205 1.3e-12 RING-like zinc finger
zf-C3HC4 PF00097 178 - 218 6.8e-09 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 178 - 219 8.8e-08 RING-H2 zinc finger domain
zf-RING_UBOX PF13445 178 - 216 3.9e-07 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58720 AT3G58720 AT3G58720 AT3G58720
fragaria_vesca FvH4_6g27790
malus_domestica MD09G1234400.v1.1 MD17G1263500.v1.1
prunus_persica Prupe.3G112600_v2.0.a1
pyrus_communis pycom09g15270 pycom17g26370
rosa_chinensis RchiOBHm_Chr2g0131091
rosa_laevigata RLG00000019166
rosa_multiflora Rmu_sc0003629.1_g000064
rosa_roxburghii Rroxscaffold_2G00113210
rosa_rugosa Rorug02G0294900
rosa_samantha Rh2AG347200 Rh2BG354700 Rh2CG333400 Rh2DG372600
rosa_wichuraiana Rw2G028190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 236
AciI CCGC 1 cut(s) 71
AcsI RAATTY 1 cut(s) 273
AcuI CTGAAG 1 cut(s) 440
AfaI GTAC 2 cut(s) 10, 146
AfiI CCNNNNNNNGG 1 cut(s) 209
AgsI TTSAA 3 cut(s) 158, 195, 368
AjnI CCWGG 2 cut(s) 235, 262
AjuI GAANNNNNNNTTGG 2 cut(s) 105, 137
AleI CACNNNNGTG 1 cut(s) 488
AluBI AGCT 1 cut(s) 418
AluI AGCT 1 cut(s) 418
Alw26I GTCTC 1 cut(s) 474
AlwNI CAGNNNCTG 1 cut(s) 418
Ama87I CYCGRG 1 cut(s) 165
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 2 cut(s) 254, 257
ApoI RAATTY 1 cut(s) 273
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
AspS9I GGNCC 1 cut(s) 286
AsuHPI GGTGA 3 cut(s) 122, 475, 637
AsuII TTCGAA 1 cut(s) 445
AsuNHI GCTAGC 1 cut(s) 217
AvaI CYCGRG 1 cut(s) 165
AvaII GGWCC 1 cut(s) 286
BanII GRGCYC 1 cut(s) 561
BbsI GAAGAC 1 cut(s) 555
BbvI GCAGC 2 cut(s) 266, 269
BccI CCATC 2 cut(s) 101, 397
BceAI ACGGC 1 cut(s) 366
BciT130I CCWGG 2 cut(s) 237, 264
BcoDI GTCTC 1 cut(s) 474
BfaI CTAG 3 cut(s) 218, 321, 360
BfmI CTRYAG 1 cut(s) 652
BfuAI ACCTGC 1 cut(s) 236
BisI GCNGC 3 cut(s) 71, 255, 258
BlpI GCTNAGC 1 cut(s) 241
BlsI GCNGC 3 cut(s) 72, 256, 259
Bme1390I CCNGG 2 cut(s) 237, 264
Bme18I GGWCC 1 cut(s) 286
BmeT110I CYCGRG 1 cut(s) 165
BmgT120I GGNCC 1 cut(s) 286
BmiI GGNNCC 2 cut(s) 128, 268
BmrFI CCNGG 2 cut(s) 237, 264
BmrI ACTGGG 1 cut(s) 641
BmtI GCTAGC 1 cut(s) 221
BmuI ACTGGG 1 cut(s) 641
BpiI GAAGAC 1 cut(s) 555
BpmI CTGGAG 1 cut(s) 361
Bpu1102I GCTNAGC 1 cut(s) 241
Bpu14I TTCGAA 1 cut(s) 445
BsaJI CCNNGG 1 cut(s) 620
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 647
Bse3DI GCAATG 3 cut(s) 407, 640, 640
BseBI CCWGG 2 cut(s) 237, 264
BseDI CCNNGG 1 cut(s) 620
BseGI GGATG 1 cut(s) 46
BseLI CCNNNNNNNGG 1 cut(s) 209
BseMI GCAATG 3 cut(s) 407, 640, 640
BseNI ACTGG 1 cut(s) 647
BseRI GAGGAG 3 cut(s) 18, 21, 512
BseXI GCAGC 2 cut(s) 266, 269
BshFI GGCC 1 cut(s) 353
BsiHKCI CYCGRG 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 474
BsmI GAATGC 1 cut(s) 614
BsnI GGCC 1 cut(s) 353
BsoBI CYCGRG 1 cut(s) 165
Bsp119I TTCGAA 1 cut(s) 445
Bsp1286I GDGCHC 1 cut(s) 561
Bsp143I GATC 1 cut(s) 330
Bsp1720I GCTNAGC 1 cut(s) 241
BspACI CCGC 1 cut(s) 71
BspANI GGCC 1 cut(s) 353
BspHI TCATGA 1 cut(s) 601
BspLI GGNNCC 2 cut(s) 128, 268
BspMI ACCTGC 1 cut(s) 236
BspOI GCTAGC 1 cut(s) 221
BspT104I TTCGAA 1 cut(s) 445
BsrDI GCAATG 3 cut(s) 407, 640, 640
BsrI ACTGG 1 cut(s) 647
BssECI CCNNGG 1 cut(s) 620
BssMI GATC 1 cut(s) 330
BssT1I CCWWGG 1 cut(s) 620
Bst2UI CCWGG 2 cut(s) 237, 264
Bst4CI ACNGT 1 cut(s) 487
Bst6I CTCTTC 2 cut(s) 39, 45
BstBI TTCGAA 1 cut(s) 445
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 2 cut(s) 241, 669
BstEII GGTNACC 1 cut(s) 169
BstF5I GGATG 1 cut(s) 46
BstKTI GATC 1 cut(s) 333
BstMAI GTCTC 1 cut(s) 474
BstMBI GATC 1 cut(s) 330
BstMWI GCNNNNNNNGC 2 cut(s) 251, 311
BstNI CCWGG 2 cut(s) 237, 264
BstPI GGTNACC 1 cut(s) 169
BstSCI CCNGG 2 cut(s) 235, 262
BstSFI CTRYAG 1 cut(s) 652
BstV1I GCAGC 2 cut(s) 266, 269
BstV2I GAAGAC 1 cut(s) 555
BstXI CCANNNNNNTGG 1 cut(s) 544
BsuRI GGCC 1 cut(s) 353
BtsCI GGATG 1 cut(s) 46
BveI ACCTGC 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 219
CaiI CAGNNNCTG 1 cut(s) 418
CciI TCATGA 1 cut(s) 601
Cfr13I GGNCC 1 cut(s) 286
CseI GACGC 1 cut(s) 174
CsiI ACCWGGT 1 cut(s) 262
Csp6I GTAC 2 cut(s) 9, 145
CviAII CATG 2 cut(s) 65, 602
CviJI RGCY 6 cut(s) 70, 119, 240, 353, 418, 559
CviKI_1 RGCY 6 cut(s) 70, 119, 240, 353, 418, 559
CviQI GTAC 2 cut(s) 9, 145
DdeI CTNAG 2 cut(s) 241, 669
DpnI GATC 1 cut(s) 332
DpnII GATC 1 cut(s) 330
Eam1104I CTCTTC 2 cut(s) 39, 45
EarI CTCTTC 2 cut(s) 39, 45
Eco130I CCWWGG 1 cut(s) 620
Eco24I GRGCYC 1 cut(s) 561
Eco47I GGWCC 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 440
Eco88I CYCGRG 1 cut(s) 165
Eco91I GGTNACC 1 cut(s) 169
EcoO65I GGTNACC 1 cut(s) 169
EcoRI GAATTC 1 cut(s) 273
EcoRII CCWGG 2 cut(s) 235, 262
EcoT14I CCWWGG 1 cut(s) 620
EcoT22I ATGCAT 1 cut(s) 614
EcoT38I GRGCYC 1 cut(s) 561
ErhI CCWWGG 1 cut(s) 620
FaeI CATG 2 cut(s) 68, 605
FaiI YATR 8 cut(s) 66, 279, 433, 575, 594, 596, 603, 665
FatI CATG 2 cut(s) 64, 601
FauNDI CATATG 1 cut(s) 594
Fnu4HI GCNGC 3 cut(s) 71, 255, 258
FokI GGATG 1 cut(s) 33
FriOI GRGCYC 1 cut(s) 561
Fsp4HI GCNGC 3 cut(s) 71, 255, 258
FspBI CTAG 3 cut(s) 218, 321, 360
GluI GCNGC 3 cut(s) 71, 255, 258
GsuI CTGGAG 1 cut(s) 361
HaeIII GGCC 1 cut(s) 353
HgaI GACGC 1 cut(s) 174
Hin1II CATG 2 cut(s) 68, 605
HinfI GANTC 2 cut(s) 191, 374
HphI GGTGA 3 cut(s) 122, 475, 637
Hpy166II GTNNAC 1 cut(s) 466
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 5 cut(s) 88, 158, 270, 378, 602
Hpy8I GTNNAC 1 cut(s) 466
Hpy99I CGWCG 1 cut(s) 190
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4V TGCA 3 cut(s) 227, 412, 612
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 311
HpyF3I CTNAG 2 cut(s) 241, 669
Hsp92II CATG 2 cut(s) 68, 605
Kzo9I GATC 1 cut(s) 330
LmnI GCTCC 1 cut(s) 142
Lsp1109I GCAGC 2 cut(s) 266, 269
MabI ACCWGGT 1 cut(s) 262
MaeI CTAG 3 cut(s) 218, 321, 360
MaeIII GTNAC 2 cut(s) 169, 389
MalI GATC 1 cut(s) 332
MboI GATC 1 cut(s) 330
MboII GAAGA 8 cut(s) 26, 32, 73, 76, 433, 459, 560, 617
MhlI GDGCHC 1 cut(s) 561
MluCI AATT 2 cut(s) 151, 273
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 1 cut(s) 168
Mph1103I ATGCAT 1 cut(s) 614
MslI CAYNNNNRTG 1 cut(s) 488
MspR9I CCNGG 2 cut(s) 237, 264
Mva1269I GAATGC 1 cut(s) 614
MvaI CCWGG 2 cut(s) 237, 264
MwoI GCNNNNNNNGC 2 cut(s) 251, 311
NdeI CATATG 1 cut(s) 594
NdeII GATC 1 cut(s) 330
NheI GCTAGC 1 cut(s) 217
NlaIII CATG 2 cut(s) 68, 605
NlaIV GGNNCC 2 cut(s) 128, 268
NmuCI GTSAC 1 cut(s) 389
NsiI ATGCAT 1 cut(s) 614
NspV TTCGAA 1 cut(s) 445
OliI CACNNNNGTG 1 cut(s) 488
PagI TCATGA 1 cut(s) 601
PctI GAATGC 1 cut(s) 614
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 3 cut(s) 72, 256, 259
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
Psp6I CCWGG 2 cut(s) 235, 262
PspEI GGTNACC 1 cut(s) 169
PspGI CCWGG 2 cut(s) 235, 262
PspN4I GGNNCC 2 cut(s) 128, 268
PspPI GGNCC 1 cut(s) 286
PsrI GAACNNNNNNTAC 2 cut(s) 458, 490
PstNI CAGNNNCTG 1 cut(s) 418
RsaI GTAC 2 cut(s) 10, 146
RsaNI GTAC 2 cut(s) 9, 145
RseI CAYNNNNRTG 1 cut(s) 488
SatI GCNGC 3 cut(s) 71, 255, 258
Sau3AI GATC 1 cut(s) 330
Sau96I GGNCC 1 cut(s) 286
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 2 cut(s) 237, 264
SduI GDGCHC 1 cut(s) 561
SetI ASST 8 cut(s) 62, 235, 250, 268, 420, 533, 573, 659
SexAI ACCWGGT 1 cut(s) 262
SfcI CTRYAG 1 cut(s) 652
SfuI TTCGAA 1 cut(s) 445
SinI GGWCC 1 cut(s) 286
SmiMI CAYNNNNRTG 1 cut(s) 488
Sse9I AATT 2 cut(s) 151, 273
SsiI CCGC 1 cut(s) 71
SspMI CTAG 3 cut(s) 218, 321, 360
StyD4I CCNGG 2 cut(s) 235, 262
StyI CCWWGG 1 cut(s) 620
TaaI ACNGT 1 cut(s) 487
TaqI TCGA 1 cut(s) 445
TasI AATT 2 cut(s) 151, 273
TauI GCSGC 1 cut(s) 73
TfiI GAWTC 1 cut(s) 191
TseFI GTSAC 1 cut(s) 389
TseI GCWGC 2 cut(s) 254, 257
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 5 cut(s) 266, 312, 531, 590, 618
VpaK11BI GGWCC 1 cut(s) 286
XapI RAATTY 1 cut(s) 273
XspI CTAG 3 cut(s) 218, 321, 360
Zsp2I ATGCAT 1 cut(s) 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.