Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003629.1

Orthogroup ID

OG0010929

Physical Location & Seq

Genomic Coordinates Reverse (-)

276256 .. 277305

Gene Structure 1050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003629.1_g000064.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atgaagagatcgtacatttttttcgtaacattaactgatcaccaggttaccagaacaaggaggccatttgggggagcgacaggagtagcacaaccaccgggctttgcaggctcactagcaccaccaggttcccgaattcatgctttgctcctcgacaatccaagaactagacagatcctcagcggccaatggactctggcagctcctagacaggaagccgactccaggttgacctataatgagcaaaagaaggcattgcagaagctcaggaagcagatatacaatccttcacggagaatatcgccaacggtcaacttgtattatagaggtactcctgttcaagacagtggcataggaagaaatgagggtaagaggtgtaccatttgcttggaagattttgagcctaaagaagaggttatgctcaccccatgtaaccatatgtttcatgaggaatgcattgtgccatgggtcaagagcaacggtcggtgcccggtctgtaggtatgggataagtgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

172

Amino Acids

19.51

Weight (kDa)

9.62

Isoelectric Point (pI)

57.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58720 AT3G58720 AT3G58720 AT3G58720
fragaria_vesca	FvH4_6g27790
malus_domestica	MD09G1234400.v1.1 MD17G1263500.v1.1
prunus_persica	Prupe.3G112600_v2.0.a1
pyrus_communis	pycom09g15270 pycom17g26370
rosa_chinensis	RchiOBHm_Chr2g0131091
rosa_laevigata	RLG00000019166
rosa_multiflora	Rmu_sc0003629.1_g000064
rosa_roxburghii	Rroxscaffold_2G00113210
rosa_rugosa	Rorug02G0294900
rosa_samantha	Rh2AG347200 Rh2BG354700 Rh2CG333400 Rh2DG372600
rosa_wichuraiana	Rw2G028190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	486
AciI	CCGC	1 cut(s)	183
AclWI	GGATC	1 cut(s)	169
AcoI	YGGCCR	1 cut(s)	184
AcsI	RAATTY	1 cut(s)	135
AfaI	GTAC	3 cut(s)	14, 331, 379
AfiI	CCNNNNNNNGG	3 cut(s)	57, 71, 225
AgsI	TTSAA	1 cut(s)	341
AjnI	CCWGG	3 cut(s)	42, 124, 224
AluBI	AGCT	2 cut(s)	203, 265
AluI	AGCT	2 cut(s)	203, 265
AlwI	GGATC	1 cut(s)	169
AoxI	GGCC	2 cut(s)	62, 184
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	135
AsuC2I	CCSGG	2 cut(s)	99, 491
AsuHPI	GGTGA	2 cut(s)	32, 415
BaeGI	GKGCMC	1 cut(s)	491
BaeI	ACNNNNGTAYC	2 cut(s)	321, 354
BanI	GGYRCC	1 cut(s)	486
BarI	GAAGNNNNNNTAC	3 cut(s)	28, 263, 295
BbvCI	CCTCAGC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	212
BciT130I	CCWGG	3 cut(s)	44, 126, 226
BclI	TGATCA	1 cut(s)	37
BcnI	CCSGG	2 cut(s)	99, 491
BfaI	CTAG	3 cut(s)	116, 168, 207
BfmI	CTRYAG	1 cut(s)	496
BisI	GCNGC	2 cut(s)	184, 201
BlsI	GCNGC	2 cut(s)	185, 202
Bme1390I	CCNGG	5 cut(s)	44, 99, 126, 226, 491
BmiI	GGNNCC	2 cut(s)	130, 488
BmrFI	CCNGG	5 cut(s)	44, 99, 126, 226, 491
BpmI	CTGGAG	1 cut(s)	208
Bpu10I	CCTNAGC	2 cut(s)	179, 266
BpuMI	CCSGG	2 cut(s)	99, 491
BsaJI	CCNNGG	1 cut(s)	464
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 71, 225
Bse3DI	GCAATG	1 cut(s)	254
BseBI	CCWGG	3 cut(s)	44, 126, 226
BseDI	CCNNGG	1 cut(s)	464
BseLI	CCNNNNNNNGG	3 cut(s)	57, 71, 225
BseMI	GCAATG	1 cut(s)	254
BseMII	CTCAG	2 cut(s)	193, 280
BseRI	GAGGAG	1 cut(s)	140
BseSI	GKGCMC	1 cut(s)	491
BseXI	GCAGC	1 cut(s)	212
Bsh1285I	CGRYCG	1 cut(s)	484
BshFI	GGCC	2 cut(s)	64, 186
BshNI	GGYRCC	1 cut(s)	486
BsiEI	CGRYCG	1 cut(s)	484
BsiSI	CCGG	2 cut(s)	98, 491
BslI	CCNNNNNNNGG	3 cut(s)	57, 71, 225
BsmI	GAATGC	1 cut(s)	458
BsnI	GGCC	2 cut(s)	64, 186
Bsp1286I	GDGCHC	1 cut(s)	491
Bsp143I	GATC	3 cut(s)	8, 37, 174
Bsp19I	CCATGG	1 cut(s)	464
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	2 cut(s)	64, 186
BspCNI	CTCAG	2 cut(s)	192, 279
BspHI	TCATGA	1 cut(s)	445
BspLI	GGNNCC	2 cut(s)	130, 488
BspPI	GGATC	1 cut(s)	169
BspT107I	GGYRCC	1 cut(s)	486
BsrDI	GCAATG	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	464
BssMI	GATC	3 cut(s)	8, 37, 174
BssT1I	CCWWGG	1 cut(s)	464
Bst2UI	CCWGG	3 cut(s)	44, 126, 226
Bst4CI	ACNGT	3 cut(s)	310, 347, 482
Bst6I	CTCTTC	1 cut(s)	405
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	2 cut(s)	179, 266
BstDSI	CCRYGG	1 cut(s)	464
BstEII	GGTNACC	1 cut(s)	46
BstKTI	GATC	3 cut(s)	11, 40, 177
BstMBI	GATC	3 cut(s)	8, 37, 174
BstMCI	CGRYCG	1 cut(s)	484
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 271
BstNI	CCWGG	3 cut(s)	44, 126, 226
BstPI	GGTNACC	1 cut(s)	46
BstSCI	CCNGG	5 cut(s)	42, 97, 124, 224, 489
BstSFI	CTRYAG	1 cut(s)	496
BstSLI	GKGCMC	1 cut(s)	491
BstV1I	GCAGC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	174
BstXI	CCANNNNNNTGG	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	174
BsuRI	GGCC	2 cut(s)	64, 186
BtgI	CCRYGG	1 cut(s)	464
BtsIMutI	CAGTG	1 cut(s)	352
Cac8I	GCNNGC	1 cut(s)	109
CciI	TCATGA	1 cut(s)	445
CsiI	ACCWGGT	2 cut(s)	42, 124
Csp6I	GTAC	3 cut(s)	13, 330, 378
CviAII	CATG	4 cut(s)	140, 429, 446, 465
CviJI	RGCY	8 cut(s)	64, 102, 111, 186, 203, 218, 265, 403
CviKI_1	RGCY	8 cut(s)	64, 102, 111, 186, 203, 218, 265, 403
CviQI	GTAC	3 cut(s)	13, 330, 378
DdeI	CTNAG	2 cut(s)	179, 266
DpnI	GATC	3 cut(s)	10, 39, 176
DpnII	GATC	3 cut(s)	8, 37, 174
EaeI	YGGCCR	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	464
Eco91I	GGTNACC	1 cut(s)	46
EcoO65I	GGTNACC	1 cut(s)	46
EcoRI	GAATTC	1 cut(s)	135
EcoRII	CCWGG	3 cut(s)	42, 124, 224
EcoT14I	CCWWGG	1 cut(s)	464
EcoT22I	ATGCAT	1 cut(s)	458
ErhI	CCWWGG	1 cut(s)	464
FaeI	CATG	4 cut(s)	143, 432, 449, 468
FatI	CATG	4 cut(s)	139, 428, 445, 464
FauNDI	CATATG	1 cut(s)	438
FbaI	TGATCA	1 cut(s)	37
Fnu4HI	GCNGC	2 cut(s)	184, 201
Fsp4HI	GCNGC	2 cut(s)	184, 201
FspBI	CTAG	3 cut(s)	116, 168, 207
GluI	GCNGC	2 cut(s)	184, 201
GsuI	CTGGAG	1 cut(s)	208
HaeIII	GGCC	2 cut(s)	64, 186
HapII	CCGG	2 cut(s)	98, 491
Hin1II	CATG	4 cut(s)	143, 432, 449, 468
HincII	GTYRAC	2 cut(s)	231, 313
HindII	GTYRAC	2 cut(s)	231, 313
HinfI	GANTC	2 cut(s)	193, 221
HpaII	CCGG	2 cut(s)	98, 491
HphI	GGTGA	2 cut(s)	32, 415
Hpy166II	GTNNAC	3 cut(s)	231, 313, 378
Hpy188III	TCNNGA	5 cut(s)	132, 268, 341, 446, 472
Hpy8I	GTNNAC	3 cut(s)	231, 313, 378
HpyAV	CCTTC	2 cut(s)	244, 297
HpyCH4III	ACNGT	3 cut(s)	310, 347, 482
HpyCH4V	TGCA	3 cut(s)	107, 259, 456
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 271
HpyF3I	CTNAG	2 cut(s)	179, 266
Hsp92II	CATG	4 cut(s)	143, 432, 449, 468
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	3 cut(s)	8, 37, 174
LmnI	GCTCC	3 cut(s)	74, 153, 208
Lsp1109I	GCAGC	1 cut(s)	212
MabI	ACCWGGT	2 cut(s)	42, 124
MaeI	CTAG	3 cut(s)	116, 168, 207
MaeIII	GTNAC	4 cut(s)	25, 46, 431, 512
MalI	GATC	3 cut(s)	10, 39, 176
MboI	GATC	3 cut(s)	8, 37, 174
MboII	GAAGA	4 cut(s)	16, 369, 404, 422
MflI	RGATCY	1 cut(s)	174
MhlI	GDGCHC	1 cut(s)	491
MluCI	AATT	1 cut(s)	135
MlyI	GAGTC	2 cut(s)	187, 215
MnlI	CCTC	8 cut(s)	54, 161, 188, 320, 358, 366, 406, 442
Mph1103I	ATGCAT	1 cut(s)	458
MseI	TTAA	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	183
MspI	CCGG	2 cut(s)	98, 491
MspR9I	CCNGG	5 cut(s)	44, 99, 126, 226, 491
Mva1269I	GAATGC	1 cut(s)	458
MvaI	CCWGG	3 cut(s)	44, 126, 226
MwoI	GCNNNNNNNGC	2 cut(s)	108, 271
NciI	CCSGG	2 cut(s)	99, 491
NcoI	CCATGG	1 cut(s)	464
NdeI	CATATG	1 cut(s)	438
NdeII	GATC	3 cut(s)	8, 37, 174
NlaIII	CATG	4 cut(s)	143, 432, 449, 468
NlaIV	GGNNCC	2 cut(s)	130, 488
NmuCI	GTSAC	1 cut(s)	512
NsiI	ATGCAT	1 cut(s)	458
PagI	TCATGA	1 cut(s)	445
PctI	GAATGC	1 cut(s)	458
PkrI	GCNGC	2 cut(s)	185, 202
PleI	GAGTC	2 cut(s)	187, 215
PpsI	GAGTC	2 cut(s)	187, 215
Psp6I	CCWGG	3 cut(s)	42, 124, 224
PspEI	GGTNACC	1 cut(s)	46
PspGI	CCWGG	3 cut(s)	42, 124, 224
PspN4I	GGNNCC	2 cut(s)	130, 488
PsuI	RGATCY	1 cut(s)	174
RsaI	GTAC	3 cut(s)	14, 331, 379
RsaNI	GTAC	3 cut(s)	13, 330, 378
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	2 cut(s)	184, 201
Sau3AI	GATC	3 cut(s)	8, 37, 174
SchI	GAGTC	2 cut(s)	187, 215
ScrFI	CCNGG	5 cut(s)	44, 99, 126, 226, 491
SduI	GDGCHC	1 cut(s)	491
SexAI	ACCWGGT	2 cut(s)	42, 124
SfcI	CTRYAG	1 cut(s)	496
Sse9I	AATT	1 cut(s)	135
SsiI	CCGC	1 cut(s)	183
SspMI	CTAG	3 cut(s)	116, 168, 207
StyD4I	CCNGG	5 cut(s)	42, 97, 124, 224, 489
StyI	CCWWGG	1 cut(s)	464
TaaI	ACNGT	3 cut(s)	310, 347, 482
TaqI	TCGA	1 cut(s)	153
TasI	AATT	1 cut(s)	135
TauI	GCSGC	1 cut(s)	186
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	1 cut(s)	512
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	3 cut(s)	17, 128, 434
TspGWI	ACGGA	1 cut(s)	307
TspRI	CASTG	1 cut(s)	352
XapI	RAATTY	1 cut(s)	135
XspI	CTAG	3 cut(s)	116, 168, 207
Zsp2I	ATGCAT	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.