Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010929

Physical Location & Seq

Genomic Coordinates Forward (+)

9407904 .. 9410109

Gene Structure 2206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G112600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAGCAGAAGCACCAACAATAACACTCCAGCCTATTCTCCTCCTTTTCTTACCTATCATGATCCGTATGACTACTTCTTCGGAATCAATGACGATATTGGTGAATGGCCTTTCGGGCAATCTATTAGTCCCCTGTCTGATAATTTTCAAGCCACCCAAGCTACCAGAACAGCTGCATCGGATTCAAGGCGACCATTTGAGGGAACGCAAGCACGAGCACGAGCACAACCTCTTGGCTTAGCAGGATCAGCAGCACCGCCAGGTTCCCGAATTCATATTCTGGTCCTTGGCGATGAAATGGCAGGACAGGGAAACCCCTGGAGACAGATCACCGGCAACCAATGGAACGCAGCCGCCCCGTCTAGGCTGGAACTGGACTCAAGATTGAGCAACACTGAGCAAAAGCGGGCATTGCAGAAGCTCAAAAAAGAAATATACAAACCTTTTAGGAGACTATCACAGAAGGTCAACTTGTATTACAGAGACACGGTTGTGAATGCGAATGAAATGGAGAATGATGAAAATAGCAAGAGGTGCGCCGTTTGTTTGGAAGACTTTGAGCCCAGACAAGAGGTTATGCTCACACCTTGTAGACACATGTTTCATGAGGAATGCATTGTACCATGGGTGAAGAGCAATGGCCACTGCCCTGTCTGTAGGTTTGCAATATGTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

226

Amino Acids

25.53

Weight (kDa)

6.95

Isoelectric Point (pI)

55.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58720 AT3G58720 AT3G58720 AT3G58720
fragaria_vesca	FvH4_6g27790
malus_domestica	MD09G1234400.v1.1 MD17G1263500.v1.1
prunus_persica	Prupe.3G112600_v2.0.a1
pyrus_communis	pycom09g15270 pycom17g26370
rosa_chinensis	RchiOBHm_Chr2g0131091
rosa_laevigata	RLG00000019166
rosa_multiflora	Rmu_sc0003629.1_g000064
rosa_roxburghii	Rroxscaffold_2G00113210
rosa_rugosa	Rorug02G0294900
rosa_samantha	Rh2AG347200 Rh2BG354700 Rh2CG333400 Rh2DG372600
rosa_wichuraiana	Rw2G028190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	592
AciI	CCGC	3 cut(s)	257, 354, 406
AclWI	GGATC	2 cut(s)	56, 253
AcoI	YGGCCR	1 cut(s)	640
AcsI	RAATTY	1 cut(s)	270
AfaI	GTAC	1 cut(s)	621
AfiI	CCNNNNNNNGG	2 cut(s)	200, 363
AflIII	ACRYGT	1 cut(s)	597
AgsI	TTSAA	2 cut(s)	149, 186
AjnI	CCWGG	2 cut(s)	259, 317
AleI	CACNNNNGTG	1 cut(s)	491
AluBI	AGCT	3 cut(s)	161, 173, 421
AluI	AGCT	3 cut(s)	161, 173, 421
Alw21I	GWGCWC	2 cut(s)	220, 226
Alw26I	GTCTC	3 cut(s)	316, 445, 477
AlwI	GGATC	2 cut(s)	56, 253
AoxI	GGCC	2 cut(s)	107, 640
ApeKI	GCWGC	3 cut(s)	173, 251, 350
ApoI	RAATTY	1 cut(s)	270
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AspLEI	GCGC	1 cut(s)	539
AspS9I	GGNCC	1 cut(s)	283
AsuHPI	GGTGA	3 cut(s)	113, 322, 640
AvaII	GGWCC	1 cut(s)	283
BalI	TGGCCA	1 cut(s)	642
BanII	GRGCYC	1 cut(s)	564
BarI	GAAGNNNNNNTAC	2 cut(s)	59, 91
BauI	CACGAG	2 cut(s)	213, 219
BbsI	GAAGAC	1 cut(s)	558
Bbv12I	GWGCWC	2 cut(s)	220, 226
BbvI	GCAGC	3 cut(s)	160, 263, 362
BceAI	ACGGC	1 cut(s)	524
BciT130I	CCWGG	2 cut(s)	261, 319
BcoDI	GTCTC	3 cut(s)	316, 445, 477
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	655
BglI	GCCNNNNNGGC	1 cut(s)	115
BisI	GCNGC	4 cut(s)	174, 252, 351, 354
BlpI	GCTNAGC	1 cut(s)	238
BlsI	GCNGC	4 cut(s)	175, 253, 352, 355
Bme1390I	CCNGG	2 cut(s)	261, 319
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	265
BmrFI	CCNGG	2 cut(s)	261, 319
BmsI	GCATC	1 cut(s)	185
BpiI	GAAGAC	1 cut(s)	558
BpmI	CTGGAG	2 cut(s)	12, 340
Bpu1102I	GCTNAGC	1 cut(s)	238
BpuEI	CTTGAG	1 cut(s)	364
BsaJI	CCNNGG	3 cut(s)	286, 317, 623
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 363
Bse118I	RCCGGY	1 cut(s)	332
Bse1I	ACTGG	1 cut(s)	378
Bse3DI	GCAATG	2 cut(s)	410, 643
BseBI	CCWGG	2 cut(s)	261, 319
BseDI	CCNNGG	3 cut(s)	286, 317, 623
BseLI	CCNNNNNNNGG	2 cut(s)	200, 363
BseMI	GCAATG	2 cut(s)	410, 643
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	1 cut(s)	378
BseRI	GAGGAG	1 cut(s)	30
BseXI	GCAGC	3 cut(s)	160, 263, 362
BshFI	GGCC	2 cut(s)	109, 642
BsiHKAI	GWGCWC	2 cut(s)	220, 226
BsiSI	CCGG	1 cut(s)	333
BslFI	GGGAC	1 cut(s)	114
BslI	CCNNNNNNNGG	2 cut(s)	200, 363
BsmAI	GTCTC	3 cut(s)	316, 445, 477
BsmFI	GGGAC	1 cut(s)	114
BsmI	GAATGC	2 cut(s)	502, 617
BsnI	GGCC	2 cut(s)	109, 642
Bsp1286I	GDGCHC	3 cut(s)	220, 226, 564
Bsp143I	GATC	3 cut(s)	61, 245, 327
Bsp1720I	GCTNAGC	1 cut(s)	238
Bsp19I	CCATGG	1 cut(s)	623
BspACI	CCGC	3 cut(s)	257, 354, 406
BspANI	GGCC	2 cut(s)	109, 642
BspCNI	CTCAG	1 cut(s)	388
BspHI	TCATGA	2 cut(s)	58, 604
BspLI	GGNNCC	1 cut(s)	265
BspPI	GGATC	2 cut(s)	56, 253
BspQI	GCTCTTC	1 cut(s)	626
BsrDI	GCAATG	2 cut(s)	410, 643
BsrFI	RCCGGY	1 cut(s)	332
BsrI	ACTGG	1 cut(s)	378
BssAI	RCCGGY	1 cut(s)	332
BssECI	CCNNGG	3 cut(s)	286, 317, 623
BssMI	GATC	3 cut(s)	61, 245, 327
BssSI	CACGAG	2 cut(s)	213, 219
BssT1I	CCWWGG	2 cut(s)	286, 623
Bst2BI	CACGAG	2 cut(s)	213, 219
Bst2UI	CCWGG	2 cut(s)	261, 319
Bst4CI	ACNGT	1 cut(s)	490
Bst6I	CTCTTC	1 cut(s)	626
BstAPI	GCANNNNNTGC	1 cut(s)	534
BstC8I	GCNNGC	2 cut(s)	210, 408
BstDEI	CTNAG	2 cut(s)	238, 396
BstDSI	CCRYGG	1 cut(s)	623
BstHHI	GCGC	1 cut(s)	539
BstKTI	GATC	3 cut(s)	64, 248, 330
BstMAI	GTCTC	3 cut(s)	316, 445, 477
BstMBI	GATC	3 cut(s)	61, 245, 327
BstMWI	GCNNNNNNNGC	5 cut(s)	115, 158, 248, 412, 534
BstNI	CCWGG	2 cut(s)	261, 319
BstNSI	RCATGY	1 cut(s)	601
BstSCI	CCNGG	2 cut(s)	259, 317
BstSFI	CTRYAG	1 cut(s)	655
BstV1I	GCAGC	3 cut(s)	160, 263, 362
BstV2I	GAAGAC	1 cut(s)	558
BsuRI	GGCC	2 cut(s)	109, 642
BtgI	CCRYGG	1 cut(s)	623
BtgZI	GCGATG	1 cut(s)	306
BtsI	GCAGTG	1 cut(s)	643
BtsIMutI	CAGTG	2 cut(s)	393, 643
Cac8I	GCNNGC	2 cut(s)	210, 408
CciI	TCATGA	2 cut(s)	58, 604
CfoI	GCGC	1 cut(s)	539
Cfr10I	RCCGGY	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	283
Csp6I	GTAC	1 cut(s)	620
CviAII	CATG	4 cut(s)	59, 598, 605, 624
CviQI	GTAC	1 cut(s)	620
DdeI	CTNAG	2 cut(s)	238, 396
DpnI	GATC	3 cut(s)	63, 247, 329
DpnII	GATC	3 cut(s)	61, 245, 327
EaeI	YGGCCR	1 cut(s)	640
Eam1104I	CTCTTC	1 cut(s)	626
EarI	CTCTTC	1 cut(s)	626
Eco130I	CCWWGG	2 cut(s)	286, 623
Eco24I	GRGCYC	1 cut(s)	564
Eco47I	GGWCC	1 cut(s)	283
EcoRI	GAATTC	1 cut(s)	270
EcoRII	CCWGG	2 cut(s)	259, 317
EcoT14I	CCWWGG	2 cut(s)	286, 623
EcoT22I	ATGCAT	1 cut(s)	617
EcoT38I	GRGCYC	1 cut(s)	564
ErhI	CCWWGG	2 cut(s)	286, 623
FaeI	CATG	4 cut(s)	62, 601, 608, 627
FaiI	YATR	9 cut(s)	60, 69, 276, 436, 578, 599, 606, 625, 670
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	4 cut(s)	58, 597, 604, 623
FauI	CCCGC	1 cut(s)	399
FblI	GTMKAC	1 cut(s)	592
Fnu4HI	GCNGC	4 cut(s)	174, 252, 351, 354
FriOI	GRGCYC	1 cut(s)	564
Fsp4HI	GCNGC	4 cut(s)	174, 252, 351, 354
FspBI	CTAG	1 cut(s)	363
GlaI	GCGC	1 cut(s)	538
GluI	GCNGC	4 cut(s)	174, 252, 351, 354
GsuI	CTGGAG	2 cut(s)	12, 340
HaeIII	GGCC	2 cut(s)	109, 642
HapII	CCGG	1 cut(s)	333
HhaI	GCGC	1 cut(s)	539
Hin1II	CATG	4 cut(s)	62, 601, 608, 627
Hin6I	GCGC	1 cut(s)	537
HinP1I	GCGC	1 cut(s)	537
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HinfI	GANTC	3 cut(s)	84, 182, 377
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	3 cut(s)	113, 322, 640
Hpy166II	GTNNAC	2 cut(s)	469, 593
Hpy188I	TCNGA	3 cut(s)	83, 139, 181
Hpy188III	TCNNGA	4 cut(s)	59, 267, 381, 605
Hpy8I	GTNNAC	2 cut(s)	469, 593
HpyAV	CCTTC	1 cut(s)	457
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4V	TGCA	4 cut(s)	176, 415, 615, 665
HpyF10VI	GCNNNNNNNGC	5 cut(s)	115, 158, 248, 412, 534
HpyF3I	CTNAG	2 cut(s)	238, 396
Hsp92II	CATG	4 cut(s)	62, 601, 608, 627
HspAI	GCGC	1 cut(s)	537
Kzo9I	GATC	3 cut(s)	61, 245, 327
LguI	GCTCTTC	1 cut(s)	626
Lsp1109I	GCAGC	3 cut(s)	160, 263, 362
LweI	GCATC	1 cut(s)	185
MaeI	CTAG	1 cut(s)	363
MalI	GATC	3 cut(s)	63, 247, 329
MboI	GATC	3 cut(s)	61, 245, 327
MboII	GAAGA	3 cut(s)	70, 563, 643
MhlI	GDGCHC	3 cut(s)	220, 226, 564
MlsI	TGGCCA	1 cut(s)	642
MluCI	AATT	2 cut(s)	142, 270
MluNI	TGGCCA	1 cut(s)	642
MlyI	GAGTC	1 cut(s)	371
MnlI	CCTC	6 cut(s)	51, 193, 240, 525, 565, 601
Mox20I	TGGCCA	1 cut(s)	642
Mph1103I	ATGCAT	1 cut(s)	617
MscI	TGGCCA	1 cut(s)	642
MslI	CAYNNNNRTG	1 cut(s)	491
Msp20I	TGGCCA	1 cut(s)	642
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	2 cut(s)	261, 319
Mva1269I	GAATGC	2 cut(s)	502, 617
MvaI	CCWGG	2 cut(s)	261, 319
MwoI	GCNNNNNNNGC	5 cut(s)	115, 158, 248, 412, 534
NcoI	CCATGG	1 cut(s)	623
NdeII	GATC	3 cut(s)	61, 245, 327
NlaIII	CATG	4 cut(s)	62, 601, 608, 627
NlaIV	GGNNCC	1 cut(s)	265
NsiI	ATGCAT	1 cut(s)	617
NspI	RCATGY	1 cut(s)	601
OliI	CACNNNNGTG	1 cut(s)	491
PagI	TCATGA	2 cut(s)	58, 604
PciI	ACATGT	1 cut(s)	597
PciSI	GCTCTTC	1 cut(s)	626
PctI	GAATGC	2 cut(s)	502, 617
PfeI	GAWTC	2 cut(s)	84, 182
PkrI	GCNGC	4 cut(s)	175, 253, 352, 355
PleI	GAGTC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	371
PscI	ACATGT	1 cut(s)	597
Psp6I	CCWGG	2 cut(s)	259, 317
PspGI	CCWGG	2 cut(s)	259, 317
PspN4I	GGNNCC	1 cut(s)	265
PspPI	GGNCC	1 cut(s)	283
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	621
RsaNI	GTAC	1 cut(s)	620
RseI	CAYNNNNRTG	1 cut(s)	491
SapI	GCTCTTC	1 cut(s)	626
SatI	GCNGC	4 cut(s)	174, 252, 351, 354
Sau3AI	GATC	3 cut(s)	61, 245, 327
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	2 cut(s)	261, 319
SduI	GDGCHC	3 cut(s)	220, 226, 564
SfaNI	GCATC	1 cut(s)	185
SfcI	CTRYAG	1 cut(s)	655
SinI	GGWCC	1 cut(s)	283
SmiMI	CAYNNNNRTG	1 cut(s)	491
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
Sse9I	AATT	2 cut(s)	142, 270
SsiI	CCGC	3 cut(s)	257, 354, 406
SspMI	CTAG	1 cut(s)	363
StyD4I	CCNGG	2 cut(s)	259, 317
StyI	CCWWGG	2 cut(s)	286, 623
TaaI	ACNGT	1 cut(s)	490
TasI	AATT	2 cut(s)	142, 270
TauI	GCSGC	1 cut(s)	356
TfiI	GAWTC	2 cut(s)	84, 182
TscAI	CASTG	2 cut(s)	400, 650
TseI	GCWGC	3 cut(s)	173, 251, 350
TspDTI	ATGAA	5 cut(s)	263, 309, 519, 534, 593
TspGWI	ACGGA	1 cut(s)	54
TspRI	CASTG	2 cut(s)	400, 650
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	1 cut(s)	270
XceI	RCATGY	1 cut(s)	601
XmiI	GTMKAC	1 cut(s)	592
XspI	CTAG	1 cut(s)	363
Zsp2I	ATGCAT	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.