Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0010929

Physical Location & Seq

Genomic Coordinates Forward (+)

15144407 .. 15144679

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g15270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGCATTGCAGAAGCTGAAGAAAGAGATATACAATCCTTTTCGGAGAATATCGCAGAGGGTGAACTTGTATTACAGAGACACAGTTATGAATAGGAAGGAAATGGAGACTGATGAAAAGAGCAAGAGGTGTGCCATTTGCTTGGAAGACTTTGAGCCCAAACAAGAGGTTATGCTCACTCCTTGTAAGCATATGTTTCATGAAGAATGCATTGTGCCTTGGGTGAAAAGCAATGGTCATTGCCCAGTTTGTAGGTTTTCTATATCTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

91

Amino Acids

10.84

Weight (kDa)

8.8

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	41 - 89	5.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	43 - 85	6.7e-16	Ring finger domain
zf-C3HC4_2	PF13923	43 - 84	2.3e-10	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	43 - 85	2.1e-08	RING-H2 zinc finger domain
zf-RING_5	PF14634	43 - 85	7.6e-09	zinc-RING finger domain
zf-RING_11	PF17123	44 - 71	2.8e-13	RING-like zinc finger
zf-C3HC4	PF00097	44 - 84	1.1e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	44 - 82	1.3e-07	RING-type zinc-finger
zf-ANAPC11	PF12861	57 - 87	4.1e-06	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58720 AT3G58720 AT3G58720 AT3G58720
fragaria_vesca	FvH4_6g27790
malus_domestica	MD09G1234400.v1.1 MD17G1263500.v1.1
prunus_persica	Prupe.3G112600_v2.0.a1
pyrus_communis	pycom09g15270 pycom17g26370
rosa_chinensis	RchiOBHm_Chr2g0131091
rosa_laevigata	RLG00000019166
rosa_multiflora	Rmu_sc0003629.1_g000064
rosa_roxburghii	Rroxscaffold_2G00113210
rosa_rugosa	Rorug02G0294900
rosa_samantha	Rh2AG347200 Rh2BG354700 Rh2CG333400 Rh2DG372600
rosa_wichuraiana	Rw2G028190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	38
AluBI	AGCT	1 cut(s)	16
AluI	AGCT	1 cut(s)	16
Alw26I	GTCTC	2 cut(s)	72, 101
AlwNI	CAGNNNCTG	1 cut(s)	16
AsuHPI	GGTGA	2 cut(s)	73, 235
BanII	GRGCYC	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	153
BcoDI	GTCTC	2 cut(s)	72, 101
BmrI	ACTGGG	1 cut(s)	239
BmuI	ACTGGG	1 cut(s)	239
BpiI	GAAGAC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	245
Bse3DI	GCAATG	3 cut(s)	5, 238, 238
BseDI	CCNNGG	1 cut(s)	218
BseMI	GCAATG	3 cut(s)	5, 238, 238
BseNI	ACTGG	1 cut(s)	245
BsmAI	GTCTC	2 cut(s)	72, 101
BsmI	GAATGC	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	159
BspHI	TCATGA	1 cut(s)	199
BsrDI	GCAATG	3 cut(s)	5, 238, 238
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	218
BssT1I	CCWWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	85
BstDEI	CTNAG	1 cut(s)	267
BstMAI	GTCTC	2 cut(s)	72, 101
BstV2I	GAAGAC	1 cut(s)	153
BstXI	CCANNNNNNTGG	1 cut(s)	142
CaiI	CAGNNNCTG	1 cut(s)	16
CciI	TCATGA	1 cut(s)	199
CviAII	CATG	1 cut(s)	200
CviJI	RGCY	2 cut(s)	16, 157
CviKI_1	RGCY	2 cut(s)	16, 157
DdeI	CTNAG	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	218
Eco24I	GRGCYC	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	218
EcoT22I	ATGCAT	1 cut(s)	212
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	1 cut(s)	203
FaiI	YATR	7 cut(s)	31, 89, 173, 192, 194, 201, 263
FatI	CATG	1 cut(s)	199
FauNDI	CATATG	1 cut(s)	192
FriOI	GRGCYC	1 cut(s)	159
Hin1II	CATG	1 cut(s)	203
HphI	GGTGA	2 cut(s)	73, 235
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	1 cut(s)	45
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	91
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4V	TGCA	2 cut(s)	10, 210
HpyF3I	CTNAG	1 cut(s)	267
Hsp92II	CATG	1 cut(s)	203
LpnPI	CCDG	1 cut(s)	258
MboII	GAAGA	3 cut(s)	31, 158, 215
MhlI	GDGCHC	1 cut(s)	159
MnlI	CCTC	3 cut(s)	51, 120, 160
Mph1103I	ATGCAT	1 cut(s)	212
MslI	CAYNNNNRTG	1 cut(s)	86
Mva1269I	GAATGC	1 cut(s)	212
NdeI	CATATG	1 cut(s)	192
NlaIII	CATG	1 cut(s)	203
NsiI	ATGCAT	1 cut(s)	212
PagI	TCATGA	1 cut(s)	199
PctI	GAATGC	1 cut(s)	212
PsrI	GAACNNNNNNTAC	2 cut(s)	56, 88
PstNI	CAGNNNCTG	1 cut(s)	16
RseI	CAYNNNNRTG	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	4 cut(s)	18, 131, 171, 257
SgeI	CNNG	8 cut(s)	79, 136, 154, 176, 195, 212, 231, 257
SmiMI	CAYNNNNRTG	1 cut(s)	86
StyI	CCWWGG	1 cut(s)	218
TaaI	ACNGT	1 cut(s)	85
TspDTI	ATGAA	4 cut(s)	104, 129, 188, 216
Zsp2I	ATGCAT	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.