Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009839

Physical Location & Seq

Genomic Coordinates Forward (+)

22039476 .. 22042726

Gene Structure 3251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G59670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1554 bp

ATGACTGTGGCTGAACCACACATGGAGCTCAACGAAGAAAGTAAGCAATTCGATGTTGAGAGGTTATCGCCAAAGAAAGAGCAAAGTCCTGGAGGAGAACATAAAGAATGTGGTCTTACCAGTGCTAATACAAGTGAGGAAACTGTTACTTCAGTTTCTGGTGGTGAGGAATTGGATGTTGATATAGTTGAATCTGATGAAAACAAGACTTCCACCACTGATGAGGACCCGAACGCTACTGAATACTCAAGCTCATTTTCCGACACTGCATCTGAGAATGCTGAAATGTTGCTTGATGGACTAACCGGAGAAGCTGAGGTCGAATCTCATTATTGGGATGAAACCGATCTAGGTCCTGCTTATGATTCTTTTAGCAGCATTTTTCATTTTAGGAAGAAAAGGCTAACTAACCACTGGAGGAGATTTATCAGGCCACTGATGTGGCGGTCCAAGTGGGTTGAGTTAAGAATTAGAGAGTTAGAGTCTCGGGCATTAGAATATCCGAAAGAGCTTGAGTTATATGATCAAGAAAAGCTTGAAGCTAATATTGATCCATCTGTGTTGGAAAGTTGTGGTGAGGGGATAAAGTCATTGCCTTTCTCTAATCCGTGTTACAAAAAAAGAGCAGCAAAGAAGAGAAGAAAGCGTAAGAAGGTCGAGAGCACAGATGATATAGCTTCATATATGGCATGTCACAACCTCTTTTCTTATATCGAGACCAAGAGATTGAGCTCAGATGGAATGGGATTGGCTGATGACTTTGGTGATGCAAAAGATCCACGGAGTGATTCAAATGAACCGGTAGACTTAGATGACGCTGACTCACTTTTTCATCACCGAGATGGAGATAGTGTCTTAGAAGAAGTTCTCTGGAAAATCGAGCTGGTGCATTCACAAGTTCATAGATTGAAAACCCAAGTTGATGTTGTTTTGTCCAAGAACACAGCAAGGTTCTCTTCCTCAGAGAATCTGAGCCTTCTTGCTGCAAGTTCTGCACCTAGCCCAACGGTTTCTGCTGGAGGAAATGGAGATGTGATCTCCTTTGGAGCAATTTACAATGCTTCACAGCATATGGCAGATTATGGTCTTGGTGATATAGTTTTCTCATCCGAAGGAGTGATTTCGAGCTATGGGGATGCGTTTCATATTCCTGACATTATTGAAAGCACTGTTGGTCTTTTCGCAGATGCTGATGTTACATTACATCATCACCAAATTGGAGATTCTTGTGAAGATATTTTGGATAACATCTTGATTCGAAATGGAGTGGCTGAAGAAATGAATGGTGATTTGATGGAAACTAGTTGCCATGACGAAGCCGAGAAAGCAGAGGAAGGAGAAGGAACCAGTGTCCCGCCGTTGCAGCAAACTGAAGAAACAGAAGAATATAACCAAGAAGAGAAATCTTTGGTACTACAAGGCCGTGAAGATTCGGTTCTTAGATCATGCTTAGCCTCTGAAATGCTTGTTCCTAGGAACAAAAGGACAAGAGGTGGAGAACGTAAGGCAAGTTCTTGGTGCAAGAAACATCTCAGCGATCCTGAAAGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

517

Amino Acids

57.68

Weight (kDa)

4.67

Isoelectric Point (pI)

60.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59670
fragaria_vesca	FvH4_5g30050
malus_domestica	MD04G1049200.v1.1 MD17G1177900.v1.1
prunus_persica	Prupe.1G207400_v2.0.a1 Prupe.1G207400_v2.0.a1
pyrus_communis	pycom04g04340 pycom17g18680 pycom17g18690
rosa_chinensis	RchiOBHm_Chr7g0224241
rosa_laevigata	RLG00000001911
rosa_multiflora	Rmu_sc0008008.1_g000002 Rmu_sc0023501.1_g000004
rosa_roxburghii	Rroxscaffold_3G00235030
rosa_rugosa	Rorug07G0221600
rosa_samantha	Rh7AG366500 Rh7BG330000 Rh7BG357500 Rh7CG384800 Rh7DG360400
rosa_wichuraiana	Rw7G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	804
AciI	CCGC	2 cut(s)	445, 1355
AclWI	GGATC	3 cut(s)	545, 770, 1532
AcuI	CTGAAG	3 cut(s)	135, 1293, 1392
AdeI	CACNNNGTG	1 cut(s)	785
AfaI	GTAC	1 cut(s)	1413
AgeI	ACCGGT	1 cut(s)	799
AgsI	TTSAA	5 cut(s)	191, 539, 792, 910, 1163
AhlI	ACTAGT	1 cut(s)	1301
AjnI	CCWGG	1 cut(s)	88
AjuI	GAANNNNNNNTTGG	2 cut(s)	1155, 1187
AleI	CACNNNNGTG	1 cut(s)	439
Alw21I	GWGCWC	3 cut(s)	30, 665, 734
Alw26I	GTCTC	2 cut(s)	489, 710
AlwI	GGATC	3 cut(s)	545, 770, 1532
AlwNI	CAGNNNCTG	2 cut(s)	158, 1190
Ama87I	CYCGRG	1 cut(s)	486
AoxI	GGCC	2 cut(s)	431, 1420
ApeKI	GCWGC	4 cut(s)	375, 626, 983, 1363
AsiGI	ACCGGT	1 cut(s)	799
Asp700I	GAANNNNTTC	1 cut(s)	864
AspA2I	CCTAGG	1 cut(s)	1472
AspS9I	GGNCC	3 cut(s)	226, 353, 447
AsuHPI	GGTGA	7 cut(s)	176, 587, 776, 827, 1103, 1202, 1298
AsuII	TTCGAA	1 cut(s)	1258
AvaI	CYCGRG	1 cut(s)	486
AvaII	GGWCC	3 cut(s)	226, 353, 447
AvrII	CCTAGG	1 cut(s)	1472
BanII	GRGCYC	2 cut(s)	30, 734
Bbv12I	GWGCWC	3 cut(s)	30, 665, 734
BbvCI	CCTCAGC	1 cut(s)	315
BbvI	GCAGC	4 cut(s)	387, 638, 970, 1375
BccI	CCATC	5 cut(s)	290, 562, 731, 836, 1288
BceAI	ACGGC	2 cut(s)	1342, 1407
BciT130I	CCWGG	1 cut(s)	90
BclI	TGATCA	1 cut(s)	523
BcoDI	GTCTC	2 cut(s)	489, 710
BcuI	ACTAGT	1 cut(s)	1301
BfaI	CTAG	4 cut(s)	350, 999, 1302, 1473
BisI	GCNGC	4 cut(s)	376, 627, 984, 1364
BlnI	CCTAGG	1 cut(s)	1472
BlpI	GCTNAGC	1 cut(s)	1450
BlsI	GCNGC	4 cut(s)	377, 628, 985, 1365
Bme1390I	CCNGG	1 cut(s)	90
Bme18I	GGWCC	3 cut(s)	226, 353, 447
BmeT110I	CYCGRG	1 cut(s)	486
BmgT120I	GGNCC	3 cut(s)	226, 353, 447
BmiI	GGNNCC	2 cut(s)	228, 1345
BmrFI	CCNGG	1 cut(s)	90
BmsI	GCATC	4 cut(s)	278, 757, 1126, 1177
BpmI	CTGGAG	3 cut(s)	111, 436, 1038
Bpu10I	CCTNAGC	1 cut(s)	315
Bpu1102I	GCTNAGC	1 cut(s)	1450
Bpu14I	TTCGAA	1 cut(s)	1258
BpuEI	CTTGAG	2 cut(s)	232, 533
BsaI	GGTCTC	1 cut(s)	710
BsaJI	CCNNGG	2 cut(s)	779, 1472
BsaWI	WCCGGW	2 cut(s)	305, 799
BsaXI	ACNNNNNCTCC	2 cut(s)	837, 867
Bse118I	RCCGGY	1 cut(s)	799
Bse1I	ACTGG	4 cut(s)	120, 419, 1347, 1549
Bse3DI	GCAATG	1 cut(s)	590
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	2 cut(s)	779, 1472
BseGI	GGATG	4 cut(s)	181, 343, 1106, 1141
BseMI	GCAATG	1 cut(s)	590
BseMII	CTCAG	6 cut(s)	264, 306, 747, 962, 975, 1546
BseNI	ACTGG	4 cut(s)	120, 419, 1347, 1549
BseRI	GAGGAG	2 cut(s)	108, 433
BseXI	GCAGC	4 cut(s)	387, 638, 970, 1375
BsgI	GTGCAG	1 cut(s)	978
BshFI	GGCC	2 cut(s)	433, 1422
BshTI	ACCGGT	1 cut(s)	799
BsiHKAI	GWGCWC	3 cut(s)	30, 665, 734
BsiHKCI	CYCGRG	1 cut(s)	486
BsiSI	CCGG	2 cut(s)	306, 800
BslFI	GGGAC	1 cut(s)	1337
BsmAI	GTCTC	2 cut(s)	489, 710
BsmFI	GGGAC	1 cut(s)	1337
BsmI	GAATGC	2 cut(s)	283, 889
BsnI	GGCC	2 cut(s)	433, 1422
Bso31I	GGTCTC	1 cut(s)	710
BsoBI	CYCGRG	1 cut(s)	486
Bsp119I	TTCGAA	1 cut(s)	1258
Bsp1286I	GDGCHC	3 cut(s)	30, 665, 734
Bsp143I	GATC	7 cut(s)	346, 523, 550, 775, 1035, 1442, 1537
Bsp1720I	GCTNAGC	1 cut(s)	1450
BspACI	CCGC	2 cut(s)	445, 1355
BspANI	GGCC	2 cut(s)	433, 1422
BspCNI	CTCAG	6 cut(s)	265, 307, 746, 963, 974, 1545
BspLI	GGNNCC	2 cut(s)	228, 1345
BspPI	GGATC	3 cut(s)	545, 770, 1532
BspT104I	TTCGAA	1 cut(s)	1258
BspTNI	GGTCTC	1 cut(s)	710
BsrDI	GCAATG	1 cut(s)	590
BsrFI	RCCGGY	1 cut(s)	799
BsrI	ACTGG	4 cut(s)	120, 419, 1347, 1549
BssAI	RCCGGY	1 cut(s)	799
BssECI	CCNNGG	2 cut(s)	779, 1472
BssMI	GATC	7 cut(s)	346, 523, 550, 775, 1035, 1442, 1537
BssT1I	CCWWGG	1 cut(s)	1472
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	4 cut(s)	7, 145, 1009, 1171
Bst6I	CTCTTC	3 cut(s)	629, 961, 1392
BstAPI	GCANNNNNTGC	1 cut(s)	992
BstBI	TTCGAA	1 cut(s)	1258
BstDSI	CCRYGG	1 cut(s)	779
BstF5I	GGATG	4 cut(s)	181, 343, 1106, 1141
BstKTI	GATC	7 cut(s)	349, 526, 553, 778, 1038, 1445, 1540
BstMAI	GTCTC	2 cut(s)	489, 710
BstMBI	GATC	7 cut(s)	346, 523, 550, 775, 1035, 1442, 1537
BstMWI	GCNNNNNNNGC	3 cut(s)	992, 1325, 1363
BstNI	CCWGG	1 cut(s)	90
BstNSI	RCATGY	1 cut(s)	693
BstSCI	CCNGG	1 cut(s)	88
BstV1I	GCAGC	4 cut(s)	387, 638, 970, 1375
BstX2I	RGATCY	1 cut(s)	775
BstXI	CCANNNNNNTGG	1 cut(s)	441
BstYI	RGATCY	1 cut(s)	775
BsuRI	GGCC	2 cut(s)	433, 1422
BtgI	CCRYGG	1 cut(s)	779
BtsCI	GGATG	4 cut(s)	181, 343, 1106, 1141
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	7 cut(s)	127, 216, 264, 412, 434, 1167, 1354
CaiI	CAGNNNCTG	2 cut(s)	158, 1190
Cfr10I	RCCGGY	1 cut(s)	799
Cfr13I	GGNCC	3 cut(s)	226, 353, 447
CseI	GACGC	1 cut(s)	824
Csp6I	GTAC	1 cut(s)	1412
CspAI	ACCGGT	1 cut(s)	799
CviAII	CATG	4 cut(s)	22, 690, 1310, 1446
CviQI	GTAC	1 cut(s)	1412
DpnI	GATC	7 cut(s)	348, 525, 552, 777, 1037, 1444, 1539
DpnII	GATC	7 cut(s)	346, 523, 550, 775, 1035, 1442, 1537
DraIII	CACNNNGTG	1 cut(s)	785
Eam1104I	CTCTTC	3 cut(s)	629, 961, 1392
EarI	CTCTTC	3 cut(s)	629, 961, 1392
Ecl136II	GAGCTC	2 cut(s)	28, 732
Eco130I	CCWWGG	1 cut(s)	1472
Eco24I	GRGCYC	2 cut(s)	30, 734
Eco31I	GGTCTC	1 cut(s)	710
Eco47I	GGWCC	3 cut(s)	226, 353, 447
Eco53kI	GAGCTC	2 cut(s)	28, 732
Eco57I	CTGAAG	3 cut(s)	135, 1293, 1392
Eco88I	CYCGRG	1 cut(s)	486
EcoICRI	GAGCTC	2 cut(s)	28, 732
EcoO109I	RGGNCCY	2 cut(s)	226, 353
EcoRII	CCWGG	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	1472
EcoT38I	GRGCYC	2 cut(s)	30, 734
ErhI	CCWWGG	1 cut(s)	1472
FaeI	CATG	4 cut(s)	25, 693, 1313, 1449
FalI	AAGNNNNNCTT	4 cut(s)	519, 551, 940, 972
FaqI	GGGAC	1 cut(s)	1337
FatI	CATG	4 cut(s)	21, 689, 1309, 1445
FauI	CCCGC	1 cut(s)	1362
FauNDI	CATATG	1 cut(s)	1071
FbaI	TGATCA	1 cut(s)	523
FblI	GTMKAC	1 cut(s)	804
Fnu4HI	GCNGC	4 cut(s)	376, 627, 984, 1364
FokI	GGATG	4 cut(s)	188, 350, 1093, 1148
FriOI	GRGCYC	2 cut(s)	30, 734
Fsp4HI	GCNGC	4 cut(s)	376, 627, 984, 1364
FspBI	CTAG	4 cut(s)	350, 999, 1302, 1473
GluI	GCNGC	4 cut(s)	376, 627, 984, 1364
GsuI	CTGGAG	3 cut(s)	111, 436, 1038
HaeIII	GGCC	2 cut(s)	433, 1422
HapII	CCGG	2 cut(s)	306, 800
HgaI	GACGC	1 cut(s)	824
Hin1II	CATG	4 cut(s)	25, 693, 1313, 1449
HindIII	AAGCTT	1 cut(s)	533
HpaII	CCGG	2 cut(s)	306, 800
HphI	GGTGA	7 cut(s)	176, 587, 776, 827, 1103, 1202, 1298
Hpy166II	GTNNAC	1 cut(s)	805
Hpy188I	TCNGA	9 cut(s)	196, 262, 274, 504, 736, 964, 972, 1111, 1459
Hpy188III	TCNNGA	7 cut(s)	527, 658, 715, 871, 1151, 1252, 1541
Hpy8I	GTNNAC	1 cut(s)	805
HpyAV	CCTTC	5 cut(s)	646, 986, 1106, 1328, 1334
HpyCH4III	ACNGT	4 cut(s)	7, 145, 1009, 1171
HpyCH4IV	ACGT	1 cut(s)	1501
HpyCH4V	TGCA	7 cut(s)	269, 770, 889, 986, 995, 1363, 1521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	992, 1325, 1363
HpySE526I	ACGT	1 cut(s)	1501
Hsp92II	CATG	4 cut(s)	25, 693, 1313, 1449
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	7 cut(s)	346, 523, 550, 775, 1035, 1442, 1537
LmnI	GCTCC	2 cut(s)	25, 1046
Lsp1109I	GCAGC	4 cut(s)	387, 638, 970, 1375
LweI	GCATC	4 cut(s)	278, 757, 1126, 1177
MaeI	CTAG	4 cut(s)	350, 999, 1302, 1473
MaeII	ACGT	1 cut(s)	1501
MaeIII	GTNAC	4 cut(s)	145, 611, 692, 1195
MalI	GATC	7 cut(s)	348, 525, 552, 777, 1037, 1444, 1539
MboI	GATC	7 cut(s)	346, 523, 550, 775, 1035, 1442, 1537
MflI	RGATCY	1 cut(s)	775
MhlI	GDGCHC	3 cut(s)	30, 665, 734
MluCI	AATT	5 cut(s)	47, 170, 468, 1050, 1215
MlyI	GAGTC	2 cut(s)	491, 815
MmeI	TCCRAC	2 cut(s)	285, 543
MroXI	GAANNNNTTC	1 cut(s)	864
MseI	TTAA	1 cut(s)	464
MslI	CAYNNNNRTG	2 cut(s)	439, 840
MspI	CCGG	2 cut(s)	306, 800
MspR9I	CCNGG	1 cut(s)	90
Mva1269I	GAATGC	2 cut(s)	283, 889
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	3 cut(s)	992, 1325, 1363
NdeI	CATATG	1 cut(s)	1071
NdeII	GATC	7 cut(s)	346, 523, 550, 775, 1035, 1442, 1537
NlaIII	CATG	4 cut(s)	25, 693, 1313, 1449
NlaIV	GGNNCC	2 cut(s)	228, 1345
NmeAIII	GCCGAG	1 cut(s)	1345
NmuCI	GTSAC	1 cut(s)	692
NspI	RCATGY	1 cut(s)	693
NspV	TTCGAA	1 cut(s)	1258
OliI	CACNNNNGTG	1 cut(s)	439
PctI	GAATGC	2 cut(s)	283, 889
PdmI	GAANNNNTTC	1 cut(s)	864
PfeI	GAWTC	8 cut(s)	191, 323, 365, 788, 967, 1223, 1255, 1430
PfoI	TCCNGGA	1 cut(s)	88
PinAI	ACCGGT	1 cut(s)	799
PkrI	GCNGC	4 cut(s)	377, 628, 985, 1365
PleI	GAGTC	2 cut(s)	490, 815
PpsI	GAGTC	2 cut(s)	490, 815
PpuMI	RGGWCCY	2 cut(s)	226, 353
Psp124BI	GAGCTC	2 cut(s)	30, 734
Psp5II	RGGWCCY	2 cut(s)	226, 353
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	2 cut(s)	228, 1345
PspPI	GGNCC	3 cut(s)	226, 353, 447
PspPPI	RGGWCCY	2 cut(s)	226, 353
PsrI	GAACNNNNNNTAC	2 cut(s)	1495, 1527
PstNI	CAGNNNCTG	2 cut(s)	158, 1190
PsuI	RGATCY	1 cut(s)	775
RsaI	GTAC	1 cut(s)	1413
RsaNI	GTAC	1 cut(s)	1412
RseI	CAYNNNNRTG	2 cut(s)	439, 840
SacI	GAGCTC	2 cut(s)	30, 734
SaqAI	TTAA	1 cut(s)	464
SatI	GCNGC	4 cut(s)	376, 627, 984, 1364
Sau3AI	GATC	7 cut(s)	346, 523, 550, 775, 1035, 1442, 1537
Sau96I	GGNCC	3 cut(s)	226, 353, 447
SchI	GAGTC	2 cut(s)	491, 815
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	3 cut(s)	30, 665, 734
SfaNI	GCATC	4 cut(s)	278, 757, 1126, 1177
SfuI	TTCGAA	1 cut(s)	1258
SinI	GGWCC	3 cut(s)	226, 353, 447
SmiMI	CAYNNNNRTG	2 cut(s)	439, 840
SmlI	CTYRAG	2 cut(s)	247, 512
SmoI	CTYRAG	2 cut(s)	247, 512
SpeI	ACTAGT	1 cut(s)	1301
Sse9I	AATT	5 cut(s)	47, 170, 468, 1050, 1215
SsiI	CCGC	2 cut(s)	445, 1355
SspI	AATATT	1 cut(s)	547
SspMI	CTAG	4 cut(s)	350, 999, 1302, 1473
SstI	GAGCTC	2 cut(s)	30, 734
StyD4I	CCNGG	1 cut(s)	88
StyI	CCWWGG	1 cut(s)	1472
TaaI	ACNGT	4 cut(s)	7, 145, 1009, 1171
TaiI	ACGT	1 cut(s)	1504
TaqI	TCGA	7 cut(s)	51, 321, 657, 714, 879, 1124, 1258
TasI	AATT	5 cut(s)	47, 170, 468, 1050, 1215
TfiI	GAWTC	8 cut(s)	191, 323, 365, 788, 967, 1223, 1255, 1430
Tru1I	TTAA	1 cut(s)	464
Tru9I	TTAA	1 cut(s)	464
TscAI	CASTG	7 cut(s)	127, 223, 271, 419, 441, 1174, 1354
TseFI	GTSAC	1 cut(s)	692
TseI	GCWGC	4 cut(s)	375, 626, 983, 1363
Tsp45I	GTSAC	1 cut(s)	692
TspDTI	ATGAA	9 cut(s)	213, 354, 374, 669, 810, 821, 890, 1133, 1295
TspGWI	ACGGA	2 cut(s)	597, 796
TspRI	CASTG	7 cut(s)	127, 223, 271, 419, 441, 1174, 1354
VpaK11BI	GGWCC	3 cut(s)	226, 353, 447
XceI	RCATGY	1 cut(s)	693
XmaJI	CCTAGG	1 cut(s)	1472
XmiI	GTMKAC	1 cut(s)	804
XmnI	GAANNNNTTC	1 cut(s)	864
XspI	CTAG	4 cut(s)	350, 999, 1302, 1473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.