MD04G1049200.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
5760084 .. 5763930
3847 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1049200.v1.1.491

Sequence Viewer

Length: 1539 bp
ATGGCTCCTGCCCAACCAGACATGGAGGCTGACCAGCTCCAAGACTGCAAACCATTTGTCAACCCAAAAGTTGAACTTGTTGAGGATGATACAGATATCAGAAGGGCTTCCTTGCCAAACTCTGCTTCTGCTTCGGCTTCGGCATCGGAGGGAAAACACATCGCTCCAGTCGTCGACATTGATATAATTCAGTGCACAAGTAATCAGGACAGTACTCAGCCTGATCCCGATGCAACGGATGAATATTCAACCTCATTCGCCGACACTACGTCCGACACTGACAATTTTTCTGGATTTTGTGAAGAAGGTGAAGTGCAGTCACACGAGCACAATGCTTTGACATCTGCTTTTGATGCATTTGCGAGTACATTTCAAACCAGGAAGAAGAAGTTGACAAATCACTGGAGGAGCTTTATACGTCCTGTAATGTGGCGCTGCAAATGGATGGAATTGAGAATCAAAGAAATTGAAGCACAAGCACTAAAGTATTCCAGAGACCTACGAGTAGCATATGATAAAAAAAGGCATACAGGATTCGACCAACGTACTTTGGATGAATTTGGTTCAAAGTCATTGCCATTTTGTAGTCAATTCCGCAGAAAGAAAGCTATGAAGAGGAGGAAACGCAAGAGAGTTGAAGACACAACTGATATAGCATCATACATCTCAAATCATAGTGTCTTTTCCTATCTTGAAAATAAAAGATCCGATCCTGACAGCACATCCATTGCTGATGACTTTAATAATGCAGTAATCACAGAGCAGAGTGCGGATTACAATGATAAACTCAGTGCTGGTGATAACTGGGCATTCTTTGAGTACCGAGATGGTGACAAGTCTTTGGAGCATGTCCTTTGGAAAATTGAGACAGTGCACTCTCGGGTTCACAAGTTAAAGTATCAAATGGATGTGGTGATGTCAAAAAATGCTGCAAGGTTTTCTTCCAGCGAAAATTTGAGCATTCTTGTACCCTGTGATGCACAGACCAGCTCTGCACATAGTCCAGCATTGTCTCCTGGCAATGGAGAAACAAACTCTGCGGGAGCTATATATACTTCAGCTCAACATGTATCAGGCTACAATGTTGGGGATCTCGCAATGCCTGAAAGTGCAGTCTCAAGTTTTGTGGAGGGAGTCACTGTTCCTGATATAATTGAAAGCACTGTGGGACTACCGTCTGCTGTTGACGTTACCTTCCATCAGCCACAGTTTGGAGACTCAAGCGAAGATATTGTGGATAATGTCCTGATACATAATGAGGCAGCTGAAGCAGAGAAGCGCGCTTTCCAAATGATCAACGACCAACCTAAAGAGGAACATCAGCAACCAGAGAAAGACTTACAAGAAGCCGCTTTTCCAACTCCACAATCAGAACCTGCTCCCTCGGCAGAAGCTGCTGTTCCTCAGGAACAATCAACTCTAGAGTCATGCTTGGCTTCCGATGTAAATTTTCATAGAAACAAGAGAAAGCGAGGGGAGCGGAAAGCAGGTTCGGTTGTTTGGAGCAAGAAATGCTCAGGCGAGCCCGATAGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

513

Amino Acids

57.06

Weight (kDa)

5.13

Isoelectric Point (pI)

53.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1384, 1478
AccB7I CCANNNNNTGG 1 cut(s) 1211
AccBSI CCGCTC 1 cut(s) 1480
AccI GTMKAC 1 cut(s) 174
AccII CGCG 1 cut(s) 1281
AciI CCGC 5 cut(s) 595, 770, 1040, 1350, 1480
AclWI GGATC 4 cut(s) 218, 699, 704, 1098
AcsI RAATTY 3 cut(s) 557, 952, 1447
AcuI CTGAAG 2 cut(s) 1041, 1287
AfaI GTAC 5 cut(s) 214, 367, 547, 821, 969
AfiI CCNNNNNNNGG 2 cut(s) 1022, 1211
AflIII ACRYGT 1 cut(s) 1066
AgsI TTSAA 8 cut(s) 74, 249, 374, 470, 567, 638, 695, 1157
AhdI GACNNNNNGTC 1 cut(s) 268
AjnI CCWGG 2 cut(s) 377, 1015
AjuI GAANNNNNNNTTGG 2 cut(s) 109, 141
AloI GAACNNNNNNTCC 4 cut(s) 1125, 1157, 1474, 1506
AluBI AGCT 8 cut(s) 37, 411, 608, 990, 1046, 1061, 1265, 1394
AluI AGCT 8 cut(s) 37, 411, 608, 990, 1046, 1061, 1265, 1394
Alw21I GWGCWC 3 cut(s) 197, 330, 876
Alw26I GTCTC 5 cut(s) 489, 860, 1017, 1120, 1209
Alw44I GTGCAC 2 cut(s) 193, 872
AlwI GGATC 4 cut(s) 218, 699, 704, 1098
AlwNI CAGNNNCTG 2 cut(s) 1376, 1394
Ama87I CYCGRG 1 cut(s) 879
ApaLI GTGCAC 2 cut(s) 193, 872
ApeKI GCWGC 4 cut(s) 435, 929, 1262, 1394
ApoI RAATTY 3 cut(s) 557, 952, 1447
ArsI GACNNNNNNTTYG 2 cut(s) 42, 74
Asp700I GAANNNNTTC 1 cut(s) 106
AspLEI GCGC 3 cut(s) 435, 1281, 1283
AsuHPI GGTGA 4 cut(s) 320, 809, 842, 925
AvaI CYCGRG 1 cut(s) 879
AxyI CCTNAGG 1 cut(s) 1404
BaeGI GKGCMC 2 cut(s) 197, 876
BanII GRGCYC 1 cut(s) 1527
BauI CACGAG 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 645
Bbv12I GWGCWC 3 cut(s) 197, 330, 876
BbvI GCAGC 4 cut(s) 422, 916, 1274, 1381
BccI CCATC 3 cut(s) 439, 821, 1206
BcgI CGANNNNNNTGC 2 cut(s) 314, 348
BciT130I CCWGG 2 cut(s) 379, 1017
BclI TGATCA 1 cut(s) 1293
BcoDI GTCTC 5 cut(s) 489, 860, 1017, 1120, 1209
BfaI CTAG 1 cut(s) 1421
BfoI RGCGCY 1 cut(s) 436
BfuAI ACCTGC 2 cut(s) 1384, 1478
BisI GCNGC 5 cut(s) 436, 930, 1263, 1350, 1395
BlsI GCNGC 5 cut(s) 437, 931, 1264, 1351, 1396
BmcAI AGTACT 1 cut(s) 214
Bme1390I CCNGG 2 cut(s) 379, 1017
BmeRI GACNNNNNGTC 1 cut(s) 268
BmeT110I CYCGRG 1 cut(s) 879
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 379, 1017
BmrI ACTGGG 1 cut(s) 814
BmsI GCATC 5 cut(s) 152, 220, 343, 665, 967
BmuI ACTGGG 1 cut(s) 814
BoxI GACNNNNGTC 1 cut(s) 1174
BpiI GAAGAC 1 cut(s) 645
BpmI CTGGAG 2 cut(s) 150, 424
Bpu10I CCTNAGC 1 cut(s) 1516
BpuEI CTTGAG 2 cut(s) 1102, 1204
BsaI GGTCTC 1 cut(s) 489
BsaJI CCNNGG 1 cut(s) 1383
BsaXI ACNNNNNCTCC 2 cut(s) 1125, 1155
Bsc4I CCNNNNNNNGG 2 cut(s) 1022, 1211
Bse1I ACTGG 3 cut(s) 167, 407, 809
Bse21I CCTNAGG 1 cut(s) 1404
Bse3DI GCAATG 4 cut(s) 572, 726, 1027, 1104
BseBI CCWGG 2 cut(s) 379, 1017
BseDI CCNNGG 1 cut(s) 1383
BseGI GGATG 6 cut(s) 91, 244, 450, 559, 722, 913
BseLI CCNNNNNNNGG 2 cut(s) 1022, 1211
BseMI GCAATG 4 cut(s) 572, 726, 1027, 1104
BseMII CTCAG 4 cut(s) 230, 802, 1418, 1530
BseNI ACTGG 3 cut(s) 167, 407, 809
BsePI GCGCGC 1 cut(s) 1279
BseRI GAGGAG 2 cut(s) 421, 631
BseSI GKGCMC 2 cut(s) 197, 876
BseXI GCAGC 4 cut(s) 422, 916, 1274, 1381
BsgI GTGCAG 3 cut(s) 335, 978, 1131
Bsh1236I CGCG 1 cut(s) 1281
BsiHKAI GWGCWC 3 cut(s) 197, 330, 876
BsiHKCI CYCGRG 1 cut(s) 879
BslFI GGGAC 1 cut(s) 1182
BslI CCNNNNNNNGG 2 cut(s) 1022, 1211
BsmAI GTCTC 5 cut(s) 489, 860, 1017, 1120, 1209
BsmFI GGGAC 1 cut(s) 1182
BsmI GAATGC 2 cut(s) 809, 960
Bso31I GGTCTC 1 cut(s) 489
BsoBI CYCGRG 1 cut(s) 879
Bsp1286I GDGCHC 4 cut(s) 197, 330, 876, 1527
Bsp143I GATC 5 cut(s) 223, 704, 709, 1090, 1293
BspACI CCGC 5 cut(s) 595, 770, 1040, 1350, 1480
BspCNI CTCAG 4 cut(s) 229, 801, 1417, 1529
BspFNI CGCG 1 cut(s) 1281
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 2 cut(s) 1384, 1478
BspPI GGATC 4 cut(s) 218, 699, 704, 1098
BspTNI GGTCTC 1 cut(s) 489
BsrBI CCGCTC 1 cut(s) 1480
BsrDI GCAATG 4 cut(s) 572, 726, 1027, 1104
BsrI ACTGG 3 cut(s) 167, 407, 809
BssECI CCNNGG 1 cut(s) 1383
BssHII GCGCGC 1 cut(s) 1279
BssMI GATC 5 cut(s) 223, 704, 709, 1090, 1293
BssSI CACGAG 1 cut(s) 323
Bst2BI CACGAG 1 cut(s) 323
Bst2UI CCWGG 2 cut(s) 379, 1017
Bst4CI ACNGT 6 cut(s) 212, 871, 1141, 1165, 1176, 1209
Bst6I CTCTTC 1 cut(s) 608
BstAPI GCANNNNNTGC 2 cut(s) 1394, 1512
BstC8I GCNNGC 2 cut(s) 1281, 1523
BstDEI CTNAG 4 cut(s) 216, 788, 1404, 1516
BstF5I GGATG 6 cut(s) 91, 244, 450, 559, 722, 913
BstFNI CGCG 1 cut(s) 1281
BstH2I RGCGCY 1 cut(s) 436
BstHHI GCGC 3 cut(s) 435, 1281, 1283
BstKTI GATC 5 cut(s) 226, 707, 712, 1093, 1296
BstMAI GTCTC 5 cut(s) 489, 860, 1017, 1120, 1209
BstMBI GATC 5 cut(s) 223, 704, 709, 1090, 1293
BstMWI GCNNNNNNNGC 6 cut(s) 353, 1268, 1385, 1394, 1477, 1512
BstNI CCWGG 2 cut(s) 379, 1017
BstNSI RCATGY 2 cut(s) 851, 1070
BstPAI GACNNNNGTC 1 cut(s) 1174
BstSCI CCNGG 2 cut(s) 377, 1015
BstSLI GKGCMC 2 cut(s) 197, 876
BstUI CGCG 1 cut(s) 1281
BstV1I GCAGC 4 cut(s) 422, 916, 1274, 1381
BstV2I GAAGAC 1 cut(s) 645
BstX2I RGATCY 2 cut(s) 704, 1090
BstYI RGATCY 2 cut(s) 704, 1090
Bsu36I CCTNAGG 1 cut(s) 1404
BtgZI GCGATG 1 cut(s) 145
BtsCI GGATG 6 cut(s) 91, 244, 450, 559, 722, 913
BtsIMutI CAGTG 7 cut(s) 197, 276, 400, 796, 876, 1137, 1161
BveI ACCTGC 2 cut(s) 1384, 1478
Cac8I GCNNGC 2 cut(s) 1281, 1523
CaiI CAGNNNCTG 2 cut(s) 1376, 1394
CfoI GCGC 3 cut(s) 435, 1281, 1283
Csp6I GTAC 5 cut(s) 213, 366, 546, 820, 968
CspCI CAANNNNNGTGG 2 cut(s) 1107, 1142
CviAII CATG 4 cut(s) 22, 848, 1067, 1428
CviQI GTAC 5 cut(s) 213, 366, 546, 820, 968
DdeI CTNAG 4 cut(s) 216, 788, 1404, 1516
DpnI GATC 5 cut(s) 225, 706, 711, 1092, 1295
DpnII GATC 5 cut(s) 223, 704, 709, 1090, 1293
DriI GACNNNNNGTC 1 cut(s) 268
Eam1104I CTCTTC 1 cut(s) 608
Eam1105I GACNNNNNGTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 608
Eco24I GRGCYC 1 cut(s) 1527
Eco31I GGTCTC 1 cut(s) 489
Eco32I GATATC 1 cut(s) 97
Eco57I CTGAAG 2 cut(s) 1041, 1287
Eco81I CCTNAGG 1 cut(s) 1404
Eco88I CYCGRG 1 cut(s) 879
EcoRII CCWGG 2 cut(s) 377, 1015
EcoRV GATATC 1 cut(s) 97
EcoT22I ATGCAT 1 cut(s) 358
EcoT38I GRGCYC 1 cut(s) 1527
FaeI CATG 4 cut(s) 25, 851, 1070, 1431
FalI AAGNNNNNCTT 4 cut(s) 60, 92, 925, 957
FaqI GGGAC 1 cut(s) 1182
FatI CATG 4 cut(s) 21, 847, 1066, 1427
FauI CCCGC 1 cut(s) 1033
FauNDI CATATG 1 cut(s) 511
FbaI TGATCA 1 cut(s) 1293
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 5 cut(s) 436, 930, 1263, 1350, 1395
FokI GGATG 6 cut(s) 98, 251, 457, 566, 709, 920
FriOI GRGCYC 1 cut(s) 1527
Fsp4HI GCNGC 5 cut(s) 436, 930, 1263, 1350, 1395
FspBI CTAG 1 cut(s) 1421
GlaI GCGC 3 cut(s) 434, 1280, 1282
GluI GCNGC 5 cut(s) 436, 930, 1263, 1350, 1395
GsuI CTGGAG 2 cut(s) 150, 424
HaeII RGCGCY 1 cut(s) 436
HhaI GCGC 3 cut(s) 435, 1281, 1283
Hin1II CATG 4 cut(s) 25, 851, 1070, 1431
Hin6I GCGC 3 cut(s) 433, 1279, 1281
HinP1I GCGC 3 cut(s) 433, 1279, 1281
HincII GTYRAC 4 cut(s) 61, 175, 393, 1186
HindII GTYRAC 4 cut(s) 61, 175, 393, 1186
HinfI GANTC 5 cut(s) 456, 534, 1134, 1217, 1424
HphI GGTGA 4 cut(s) 320, 809, 842, 925
Hpy166II GTNNAC 7 cut(s) 61, 175, 195, 393, 874, 886, 1186
Hpy188I TCNGA 6 cut(s) 101, 148, 274, 709, 1372, 1441
Hpy8I GTNNAC 7 cut(s) 61, 175, 195, 393, 874, 886, 1186
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 3 cut(s) 96, 299, 1204
HpyCH4III ACNGT 6 cut(s) 212, 871, 1141, 1165, 1176, 1209
HpyCH4IV ACGT 4 cut(s) 269, 418, 544, 1188
HpyF10VI GCNNNNNNNGC 6 cut(s) 353, 1268, 1385, 1394, 1477, 1512
HpyF3I CTNAG 4 cut(s) 216, 788, 1404, 1516
HpySE526I ACGT 4 cut(s) 269, 418, 544, 1188
Hsp92II CATG 4 cut(s) 25, 851, 1070, 1431
HspAI GCGC 3 cut(s) 433, 1279, 1281
Ksp22I TGATCA 1 cut(s) 1293
Kzo9I GATC 5 cut(s) 223, 704, 709, 1090, 1293
LmnI GCTCC 9 cut(s) 10, 42, 169, 408, 844, 1043, 1384, 1477, 1503
Lsp1109I GCAGC 4 cut(s) 422, 916, 1274, 1381
LweI GCATC 5 cut(s) 152, 220, 343, 665, 967
MaeI CTAG 1 cut(s) 1421
MaeII ACGT 4 cut(s) 269, 418, 544, 1188
MaeIII GTNAC 4 cut(s) 318, 830, 1135, 1189
MalI GATC 5 cut(s) 225, 706, 711, 1092, 1295
MbiI CCGCTC 1 cut(s) 1480
MboI GATC 5 cut(s) 223, 704, 709, 1090, 1293
MboII GAAGA 7 cut(s) 314, 394, 397, 625, 650, 933, 1238
MflI RGATCY 2 cut(s) 704, 1090
MhlI GDGCHC 4 cut(s) 197, 330, 876, 1527
MlyI GAGTC 3 cut(s) 1143, 1211, 1433
MmeI TCCRAC 2 cut(s) 297, 1382
Mph1103I ATGCAT 1 cut(s) 358
MroXI GAANNNNTTC 1 cut(s) 106
MseI TTAA 2 cut(s) 741, 893
MspA1I CMGCKG 1 cut(s) 1265
MspR9I CCNGG 2 cut(s) 379, 1017
Mva1269I GAATGC 2 cut(s) 809, 960
MvaI CCWGG 2 cut(s) 379, 1017
MvnI CGCG 1 cut(s) 1281
MwoI GCNNNNNNNGC 6 cut(s) 353, 1268, 1385, 1394, 1477, 1512
NdeI CATATG 1 cut(s) 511
NdeII GATC 5 cut(s) 223, 704, 709, 1090, 1293
NlaIII CATG 4 cut(s) 25, 851, 1070, 1431
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 1364
NmuCI GTSAC 3 cut(s) 318, 830, 1135
NsiI ATGCAT 1 cut(s) 358
NspI RCATGY 2 cut(s) 851, 1070
PauI GCGCGC 1 cut(s) 1279
PciI ACATGT 1 cut(s) 1066
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PctI GAATGC 2 cut(s) 809, 960
PdmI GAANNNNTTC 1 cut(s) 106
PfeI GAWTC 2 cut(s) 456, 534
PflMI CCANNNNNTGG 1 cut(s) 1211
PkrI GCNGC 5 cut(s) 437, 931, 1264, 1351, 1396
PleI GAGTC 3 cut(s) 1142, 1211, 1432
PpsI GAGTC 3 cut(s) 1142, 1211, 1432
PscI ACATGT 1 cut(s) 1066
PshAI GACNNNNGTC 1 cut(s) 1174
Psp6I CCWGG 2 cut(s) 377, 1015
PspGI CCWGG 2 cut(s) 377, 1015
PspN4I GGNNCC 1 cut(s) 6
PstNI CAGNNNCTG 2 cut(s) 1376, 1394
PsuI RGATCY 2 cut(s) 704, 1090
PteI GCGCGC 1 cut(s) 1279
PvuII CAGCTG 1 cut(s) 1265
RsaI GTAC 5 cut(s) 214, 367, 547, 821, 969
RsaNI GTAC 5 cut(s) 213, 366, 546, 820, 968
SalI GTCGAC 1 cut(s) 173
SaqAI TTAA 2 cut(s) 741, 893
SatI GCNGC 5 cut(s) 436, 930, 1263, 1350, 1395
Sau3AI GATC 5 cut(s) 223, 704, 709, 1090, 1293
ScaI AGTACT 1 cut(s) 214
SchI GAGTC 3 cut(s) 1143, 1211, 1433
ScrFI CCNGG 2 cut(s) 379, 1017
SduI GDGCHC 4 cut(s) 197, 330, 876, 1527
SfaNI GCATC 5 cut(s) 152, 220, 343, 665, 967
SmlI CTYRAG 2 cut(s) 1117, 1219
SmoI CTYRAG 2 cut(s) 1117, 1219
SsiI CCGC 5 cut(s) 595, 770, 1040, 1350, 1480
SspI AATATT 1 cut(s) 245
SspMI CTAG 1 cut(s) 1421
StyD4I CCNGG 2 cut(s) 377, 1015
TaaI ACNGT 6 cut(s) 212, 871, 1141, 1165, 1176, 1209
TaiI ACGT 4 cut(s) 272, 421, 547, 1191
TaqI TCGA 2 cut(s) 174, 537
TatI WGTACW 2 cut(s) 212, 365
TauI GCSGC 1 cut(s) 1352
TfiI GAWTC 2 cut(s) 456, 534
Tru1I TTAA 2 cut(s) 741, 893
Tru9I TTAA 2 cut(s) 741, 893
TscAI CASTG 7 cut(s) 197, 283, 407, 796, 876, 1144, 1168
TseFI GTSAC 3 cut(s) 318, 830, 1135
TseI GCWGC 4 cut(s) 435, 929, 1262, 1394
Tsp45I GTSAC 3 cut(s) 318, 830, 1135
TspDTI ATGAA 4 cut(s) 255, 570, 626, 1442
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 7 cut(s) 197, 283, 407, 796, 876, 1144, 1168
Van91I CCANNNNNTGG 1 cut(s) 1211
VneI GTGCAC 2 cut(s) 193, 872
XapI RAATTY 3 cut(s) 557, 952, 1447
XbaI TCTAGA 1 cut(s) 1420
XceI RCATGY 2 cut(s) 851, 1070
XmiI GTMKAC 1 cut(s) 174
XmnI GAANNNNTTC 1 cut(s) 106
XspI CTAG 1 cut(s) 1421
ZrmI AGTACT 1 cut(s) 214
Zsp2I ATGCAT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.