Rh7AG366500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0009839
Physical Location & Seq
Reverse (-)
47197853 .. 47201957
4105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG366500.1

Sequence Viewer

Length: 1515 bp
ATGGCACCTGCCCAACCATTTACAGACATTGACCAAGACTGTAAACCATGTGTAAATGCAAAAGTTGAACTACATACAGAGAACATAAATTCCCTAGAAAACTCATCTTTGGAGGACATACTGTGCATGAGTAACTGTGACGACAACTGCATCAGGATGAAATCTGTCCTGAACGGAACTGATGAGGCTTTAATTTGCATTGCGGATGTGGATGTTGACATAATCGAATGTGGAAATAATCATAACCACAGCATGAAGGCTGAAACTGAAGACTCTGATGCAACTGAATATTCAAGCTCCTTTGCGGACACTGTGTCTGACACTGAGAATTTTAGTGAAGGTGAAGTGGAATCCCAGTCCTTTCCGCAGAATGGTTTGACATCTGCTTTTGATGCATTTAGTAGTGCATTTCAAATGAGGAAGAAGAAGTTGACAAATCACTGGAGGACCTTTATACGTCCTGTGATGTGGCGGTGCAAATGGATGGAATTGAGAATTAAAGAAATTGAATCACAAGAATTGAATTATTCCCGAGCGCTTGCAGCATATGATCAAGGAAAACGTTCAGCATTTGACCAATCTATATTAGAAGAATCTGGTTCAAAGTCATTGCCATTTTCTAGTCAGGGACTACGAAAAAAATCTAACAAGCGGAGGAAACGCAAGAGAATTGAAGAGACAACTGATATTGCATCGTATATATCACATCATAACGCGTTTTCCTATTTTGAAAACAAGAGATCCGATCCTGATAGCACATCTCTGGCTGACGAATTTAGTAATGCAGTAATCACAGAACACAGTGCTGATTACAATGATAAACTCAGCACAGCCGATGAGTGGTCGCTTCTTGAGTTTCGAGATGGTGATAAGTCCTTGGAGCATGTCCTTTGGAAAATCGAGACACTGCACTCTTGGGTTCACAAGCTGAAGAACCAAATTGATGTGGTGATGCCCAAAACTGCCGCTATATTTTCTTCCTCTGAGAATTTGAGCATTATTGTACCCTGTGATGGACAGACCAGCTCTGCCCATAGTCCAGCATTCTCTGCTGGCAATGGAGATGGAATATATGCTACAACTCAGCAAACTTCAGAGTTCAATATTGGGGATCTGGTATTGCCTGAAAGTGTAGTTTCCAGTTTCGGGGAGGCTATCCCTGCTTCTGATATAATAGAAAGCTCTGTGGGACTACTGTCTGCTACTGATGTCATCTTCCATCAGCCGCAGTTTAGCGAATCAAGTGAAGATATTGTGGATAATGTCTTGATACATAATGCGGCAGAAGGAGAGAAGCGCACTTTCCAAAGGATGAGTGACGAACCCAAAGAGAATCATCAGCAGCAAGCAGAGGAAGGCAAACAAGAAGGTCCTTGGGCAACTCTTTCATCAACTGTTGAATCATGTTTAGGATTAGATGTAAATTTTCCAAGAAACAAGAGAAAAAGAGGGGAGCGAAGAACTGGTTCAGATGTTTGGAGCAAGAAATGCTCAGGCGAGCCTGGTAGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

504

Amino Acids

56.28

Weight (kDa)

4.88

Isoelectric Point (pI)

58.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 16
Acc36I ACCTGC 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 716
AciI CCGC 8 cut(s) 203, 305, 365, 472, 652, 966, 1226, 1280
AclI AACGTT 1 cut(s) 562
AclWI GGATC 3 cut(s) 735, 740, 1119
AcsI RAATTY 5 cut(s) 88, 328, 773, 988, 1423
AcuI CTGAAG 3 cut(s) 288, 950, 1077
AfaI GTAC 1 cut(s) 1005
AfeI AGCGCT 1 cut(s) 537
AfiI CCNNNNNNNGG 4 cut(s) 371, 840, 1013, 1146
AflIII ACRYGT 1 cut(s) 714
AhdI GACNNNNNGTC 1 cut(s) 313
AjnI CCWGG 1 cut(s) 1501
AloI GAACNNNNNNTCC 2 cut(s) 74, 106
AluBI AGCT 4 cut(s) 297, 928, 1026, 1182
AluI AGCT 4 cut(s) 297, 928, 1026, 1182
Alw26I GTCTC 2 cut(s) 671, 896
AlwI GGATC 3 cut(s) 735, 740, 1119
Ama87I CYCGRG 1 cut(s) 531
Aor51HI AGCGCT 1 cut(s) 537
ApeKI GCWGC 2 cut(s) 542, 1342
ApoI RAATTY 5 cut(s) 88, 328, 773, 988, 1423
Asp700I GAANNNNTTC 2 cut(s) 562, 1465
AspLEI GCGC 2 cut(s) 538, 1299
AspS9I GGNCC 2 cut(s) 447, 1370
AsuHPI GGTGA 3 cut(s) 353, 878, 961
AvaI CYCGRG 1 cut(s) 531
AvaII GGWCC 2 cut(s) 447, 1370
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 276
BbvI GCAGC 2 cut(s) 554, 1354
BccI CCATC 5 cut(s) 478, 857, 1007, 1058, 1227
BciT130I CCWGG 1 cut(s) 1503
BclI TGATCA 1 cut(s) 550
BcoDI GTCTC 2 cut(s) 671, 896
BfaI CTAG 2 cut(s) 95, 621
BfoI RGCGCY 1 cut(s) 539
BfuAI ACCTGC 1 cut(s) 16
BisI GCNGC 5 cut(s) 543, 966, 1226, 1281, 1343
BlsI GCNGC 5 cut(s) 544, 967, 1227, 1282, 1344
Bme1390I CCNGG 1 cut(s) 1503
Bme18I GGWCC 2 cut(s) 447, 1370
BmeRI GACNNNNNGTC 1 cut(s) 313
BmeT110I CYCGRG 1 cut(s) 531
BmgT120I GGNCC 2 cut(s) 447, 1370
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 1503
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 5 cut(s) 159, 268, 382, 701, 942
BmuI ACTGGG 1 cut(s) 349
BoxI GACNNNNGTC 1 cut(s) 1195
BpiI GAAGAC 1 cut(s) 276
BpmI CTGGAG 1 cut(s) 463
Bpu10I CCTNAGC 1 cut(s) 1492
BpuEI CTTGAG 1 cut(s) 872
BsaJI CCNNGG 2 cut(s) 876, 1373
Bsc4I CCNNNNNNNGG 4 cut(s) 371, 840, 1013, 1146
Bse1I ACTGG 4 cut(s) 355, 446, 1140, 1468
Bse3DI GCAATG 3 cut(s) 198, 608, 1063
BseBI CCWGG 1 cut(s) 1503
BseDI CCNNGG 2 cut(s) 876, 1373
BseGI GGATG 5 cut(s) 162, 211, 217, 489, 1317
BseLI CCNNNNNNNGG 4 cut(s) 371, 840, 1013, 1146
BseMI GCAATG 3 cut(s) 198, 608, 1063
BseMII CTCAG 5 cut(s) 315, 838, 975, 1097, 1506
BseNI ACTGG 4 cut(s) 355, 446, 1140, 1468
BseXI GCAGC 2 cut(s) 554, 1354
BsgI GTGCAG 1 cut(s) 893
Bsh1236I CGCG 1 cut(s) 716
BshNI GGYRCC 1 cut(s) 4
BsiHKCI CYCGRG 1 cut(s) 531
BslFI GGGAC 2 cut(s) 642, 1203
BslI CCNNNNNNNGG 4 cut(s) 371, 840, 1013, 1146
BsmAI GTCTC 2 cut(s) 671, 896
BsmFI GGGAC 2 cut(s) 642, 1203
BsmI GAATGC 1 cut(s) 1043
BsoBI CYCGRG 1 cut(s) 531
Bsp143I GATC 4 cut(s) 550, 740, 745, 1111
BspACI CCGC 8 cut(s) 203, 305, 365, 472, 652, 966, 1226, 1280
BspCNI CTCAG 5 cut(s) 316, 837, 976, 1096, 1505
BspFNI CGCG 1 cut(s) 716
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 16
BspPI GGATC 3 cut(s) 735, 740, 1119
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 3 cut(s) 198, 608, 1063
BsrI ACTGG 4 cut(s) 355, 446, 1140, 1468
BssECI CCNNGG 2 cut(s) 876, 1373
BssMI GATC 4 cut(s) 550, 740, 745, 1111
BssT1I CCWWGG 2 cut(s) 876, 1373
Bst2UI CCWGG 1 cut(s) 1503
Bst4CI ACNGT 7 cut(s) 41, 123, 137, 313, 803, 1197, 1396
Bst6I CTCTTC 1 cut(s) 669
BstAPI GCANNNNNTGC 2 cut(s) 1049, 1488
BstC8I GCNNGC 4 cut(s) 540, 1054, 1347, 1499
BstDEI CTNAG 5 cut(s) 324, 824, 984, 1083, 1492
BstF5I GGATG 5 cut(s) 162, 211, 217, 489, 1317
BstFNI CGCG 1 cut(s) 716
BstH2I RGCGCY 1 cut(s) 539
BstHHI GCGC 2 cut(s) 538, 1299
BstKTI GATC 4 cut(s) 553, 743, 748, 1114
BstMAI GTCTC 2 cut(s) 671, 896
BstMBI GATC 4 cut(s) 550, 740, 745, 1111
BstMWI GCNNNNNNNGC 5 cut(s) 392, 542, 1049, 1160, 1488
BstNI CCWGG 1 cut(s) 1503
BstNSI RCATGY 1 cut(s) 887
BstPAI GACNNNNGTC 1 cut(s) 1195
BstSCI CCNGG 1 cut(s) 1501
BstUI CGCG 1 cut(s) 716
BstV1I GCAGC 2 cut(s) 554, 1354
BstV2I GAAGAC 1 cut(s) 276
BstX2I RGATCY 2 cut(s) 740, 1111
BstYI RGATCY 2 cut(s) 740, 1111
BtsCI GGATG 5 cut(s) 162, 211, 217, 489, 1317
BtsI GCAGTG 1 cut(s) 905
BtsIMutI CAGTG 5 cut(s) 309, 321, 439, 808, 905
BveI ACCTGC 1 cut(s) 16
Cac8I GCNNGC 4 cut(s) 540, 1054, 1347, 1499
CfoI GCGC 2 cut(s) 538, 1299
Cfr13I GGNCC 2 cut(s) 447, 1370
Csp6I GTAC 1 cut(s) 1004
CviAII CATG 5 cut(s) 48, 127, 253, 884, 1404
CviQI GTAC 1 cut(s) 1004
DdeI CTNAG 5 cut(s) 324, 824, 984, 1083, 1492
DpnI GATC 4 cut(s) 552, 742, 747, 1113
DpnII GATC 4 cut(s) 550, 740, 745, 1111
DriI GACNNNNNGTC 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 669
Eam1105I GACNNNNNGTC 1 cut(s) 313
EarI CTCTTC 1 cut(s) 669
Eco130I CCWWGG 2 cut(s) 876, 1373
Eco47I GGWCC 2 cut(s) 447, 1370
Eco47III AGCGCT 1 cut(s) 537
Eco57I CTGAAG 3 cut(s) 288, 950, 1077
Eco88I CYCGRG 1 cut(s) 531
EcoO109I RGGNCCY 2 cut(s) 447, 1370
EcoRII CCWGG 1 cut(s) 1501
EcoT14I CCWWGG 2 cut(s) 876, 1373
EcoT22I ATGCAT 1 cut(s) 397
ErhI CCWWGG 2 cut(s) 876, 1373
FaeI CATG 5 cut(s) 51, 130, 256, 887, 1407
FaqI GGGAC 2 cut(s) 642, 1203
FatI CATG 5 cut(s) 47, 126, 252, 883, 1403
FauNDI CATATG 1 cut(s) 547
FbaI TGATCA 1 cut(s) 550
Fnu4HI GCNGC 5 cut(s) 543, 966, 1226, 1281, 1343
FokI GGATG 5 cut(s) 169, 218, 224, 496, 1324
Fsp4HI GCNGC 5 cut(s) 543, 966, 1226, 1281, 1343
FspBI CTAG 2 cut(s) 95, 621
GlaI GCGC 2 cut(s) 537, 1298
GluI GCNGC 5 cut(s) 543, 966, 1226, 1281, 1343
GsuI CTGGAG 1 cut(s) 463
HaeII RGCGCY 1 cut(s) 539
HhaI GCGC 2 cut(s) 538, 1299
Hin1II CATG 5 cut(s) 51, 130, 256, 887, 1407
Hin6I GCGC 2 cut(s) 536, 1297
HinP1I GCGC 2 cut(s) 536, 1297
HincII GTYRAC 2 cut(s) 217, 432
HindII GTYRAC 2 cut(s) 217, 432
HinfI GANTC 7 cut(s) 272, 350, 509, 593, 1238, 1333, 1400
HphI GGTGA 3 cut(s) 353, 878, 961
Hpy166II GTNNAC 4 cut(s) 44, 217, 432, 922
Hpy188I TCNGA 7 cut(s) 277, 319, 745, 985, 1096, 1168, 1471
Hpy188III TCNNGA 8 cut(s) 154, 169, 531, 749, 851, 860, 901, 1267
Hpy8I GTNNAC 4 cut(s) 44, 217, 432, 922
HpyAV CCTTC 5 cut(s) 250, 332, 1280, 1349, 1361
HpyCH4III ACNGT 7 cut(s) 41, 123, 137, 313, 803, 1197, 1396
HpyCH4IV ACGT 2 cut(s) 457, 562
HpyF10VI GCNNNNNNNGC 5 cut(s) 392, 542, 1049, 1160, 1488
HpyF3I CTNAG 5 cut(s) 324, 824, 984, 1083, 1492
HpySE526I ACGT 2 cut(s) 457, 562
Hsp92II CATG 5 cut(s) 51, 130, 256, 887, 1407
HspAI GCGC 2 cut(s) 536, 1297
Ksp22I TGATCA 1 cut(s) 550
Kzo9I GATC 4 cut(s) 550, 740, 745, 1111
LmnI GCTCC 4 cut(s) 302, 880, 1453, 1479
Lsp1109I GCAGC 2 cut(s) 554, 1354
LweI GCATC 5 cut(s) 159, 268, 382, 701, 942
MaeI CTAG 2 cut(s) 95, 621
MaeII ACGT 2 cut(s) 457, 562
MaeIII GTNAC 3 cut(s) 131, 137, 1316
MalI GATC 4 cut(s) 552, 742, 747, 1113
MboI GATC 4 cut(s) 550, 740, 745, 1111
MflI RGATCY 2 cut(s) 740, 1111
MluI ACGCGT 1 cut(s) 714
MlyI GAGTC 1 cut(s) 266
MnlI CCTC 9 cut(s) 106, 178, 411, 438, 648, 991, 1144, 1345, 1442
Mph1103I ATGCAT 1 cut(s) 397
MroXI GAANNNNTTC 2 cut(s) 562, 1465
MseI TTAA 2 cut(s) 191, 498
MslI CAYNNNNRTG 1 cut(s) 155
MspR9I CCNGG 1 cut(s) 1503
Mva1269I GAATGC 1 cut(s) 1043
MvaI CCWGG 1 cut(s) 1503
MvnI CGCG 1 cut(s) 716
MwoI GCNNNNNNNGC 5 cut(s) 392, 542, 1049, 1160, 1488
NdeI CATATG 1 cut(s) 547
NdeII GATC 4 cut(s) 550, 740, 745, 1111
NlaIII CATG 5 cut(s) 51, 130, 256, 887, 1407
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 137, 1316
NsiI ATGCAT 1 cut(s) 397
NspI RCATGY 1 cut(s) 887
PaqCI CACCTGC 1 cut(s) 16
PctI GAATGC 1 cut(s) 1043
PdmI GAANNNNTTC 2 cut(s) 562, 1465
PfeI GAWTC 6 cut(s) 350, 509, 593, 1238, 1333, 1400
PkrI GCNGC 5 cut(s) 544, 967, 1227, 1282, 1344
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
PpuMI RGGWCCY 2 cut(s) 447, 1370
PshAI GACNNNNGTC 1 cut(s) 1195
Psp1406I AACGTT 1 cut(s) 562
Psp5II RGGWCCY 2 cut(s) 447, 1370
Psp6I CCWGG 1 cut(s) 1501
PspGI CCWGG 1 cut(s) 1501
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 447, 1370
PspPPI RGGWCCY 2 cut(s) 447, 1370
PsuI RGATCY 2 cut(s) 740, 1111
RsaI GTAC 1 cut(s) 1005
RsaNI GTAC 1 cut(s) 1004
RseI CAYNNNNRTG 1 cut(s) 155
SaqAI TTAA 2 cut(s) 191, 498
SatI GCNGC 5 cut(s) 543, 966, 1226, 1281, 1343
Sau3AI GATC 4 cut(s) 550, 740, 745, 1111
Sau96I GGNCC 2 cut(s) 447, 1370
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 1 cut(s) 1503
SfaNI GCATC 5 cut(s) 159, 268, 382, 701, 942
SinI GGWCC 2 cut(s) 447, 1370
SmiMI CAYNNNNRTG 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 851
SmoI CTYRAG 1 cut(s) 851
SsiI CCGC 8 cut(s) 203, 305, 365, 472, 652, 966, 1226, 1280
SspI AATATT 2 cut(s) 290, 1105
SspMI CTAG 2 cut(s) 95, 621
StyD4I CCNGG 1 cut(s) 1501
StyI CCWWGG 2 cut(s) 876, 1373
TaaI ACNGT 7 cut(s) 41, 123, 137, 313, 803, 1197, 1396
TaiI ACGT 2 cut(s) 460, 565
TaqI TCGA 3 cut(s) 225, 859, 900
TauI GCSGC 3 cut(s) 968, 1228, 1283
TfiI GAWTC 6 cut(s) 350, 509, 593, 1238, 1333, 1400
Tru1I TTAA 2 cut(s) 191, 498
Tru9I TTAA 2 cut(s) 191, 498
TscAI CASTG 5 cut(s) 316, 328, 446, 808, 912
TseFI GTSAC 2 cut(s) 137, 1316
TseI GCWGC 2 cut(s) 542, 1342
Tsp45I GTSAC 2 cut(s) 137, 1316
TspDTI ATGAA 3 cut(s) 173, 269, 1377
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 5 cut(s) 316, 328, 446, 808, 912
VpaK11BI GGWCC 2 cut(s) 447, 1370
XapI RAATTY 5 cut(s) 88, 328, 773, 988, 1423
XceI RCATGY 1 cut(s) 887
XmnI GAANNNNTTC 2 cut(s) 562, 1465
XspI CTAG 2 cut(s) 95, 621
Zsp2I ATGCAT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.