Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0009839

Physical Location & Seq

Genomic Coordinates Reverse (-)

48608941 .. 48612919

Gene Structure 3979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG384800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGAGTAACTGTGACGACAACTGCATCAGGATGAAATCTGTCCTGAACGGAACTGATGAGGCTTTAATTTGCATTGCGGATGTGGATGTTGACATAATCGAATGTGGAAATAATCATAACCACAGCATGAAGGCTGAAACTGAAGACTCTGATGCAACTGAATATTCAAGCTCCTTTGCGGACACTGTGTCTGACACTGAGAATTTTAGTGAAGGTGAAGTGGAATCCCAGTCCTTTCCGCAGAATGGTTTGACATCTGCTTTTGATGCATTTAGTAGTGCATTTCAAATGAGGAAGAAGAAGTTGACAAATCACTGGAGGACCTTTATACGTCCTGTGATGTGGCGGTGCAAATGGATGGAATTGAGAATTAAAGAAATTGAATCACAAGAATTGAATTATTCCCGAGCGCTTGCAGCATATGATCAAGGAAAACGTTCAGCATTTGACCAATCTATATTAGAAGAATCTGGTTCAAAGTCATTGCCATTTTCTAGTCAGGGACTACGAAAAAAATCTAACAAGCGGAGGAAACGCAAGAGAATTGAAGAGACAACTGATATTGCATCGTATATATCACATCATAACGCGTTTTCCTATTTTGAAAACAAGAGATCCGATCCTGATAGCACATCTCTGGCTGACGAATTTAGTAATGCAGTAATCACAGAACACAGTGCTGATTACAATGATAAACTCAGCACAGCCGATGAGTGGTCGCTTCTTGAGTTTCGAGATGGTGATAAGTCCTTGGAGCATGTCCTTTGGAAAATCGAGACACTGCACTCTTGGGTTCACAAGCTGAAGAACCAAATTGATGTGGTGATGCCCAAAACTGCCGCTATATTTTCTTCCTCTGAGAATTTGAGCATTATTGTACCCTGTGATGGACAGACCAGCTCTGCCCATAGTCCAGCATTCTCTGCTGGCAATGGAGATGGAATATATGCTACAACTCAGCAAACTTCAGAGTTCAATATTGGGGATCTGGTATTGCCTGAAAGTGTAGTTTCCAGTTTCGGGGAGGCTATCCCTGCTTCTGATATAATAGAAAGCTCTGTGGGACTACTGTCTGCTACTGATGTCATCTTCCATCAGCCGCAGTTTAGCGAATCAAGTGAAGATATTGTGGATAATGTCTTGATACATAATGCGGCAGAAGGAGAGAAGCGCACTTTCCAAAGGATGAGTGACGAACCCAAAGAGAATCATCAGCAGCAAGCAGAGGAAGGCAAACAAGAAGGTCCTTGGGCAACTCTTTCATCAACTGTTGAATCATGTTTAGGATTAGATGTAAATTTTCCAAGAAACAAGAGAAAAAGAGGGGAGCGAAGAACTGGTTCAGATGTTTGGAGCAAGAAATGCTCAGGCGAGCCTGGTAGCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

462

Amino Acids

51.65

Weight (kDa)

5.01

Isoelectric Point (pI)

57.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59670
fragaria_vesca	FvH4_5g30050
malus_domestica	MD04G1049200.v1.1 MD17G1177900.v1.1
prunus_persica	Prupe.1G207400_v2.0.a1 Prupe.1G207400_v2.0.a1
pyrus_communis	pycom04g04340 pycom17g18680 pycom17g18690
rosa_chinensis	RchiOBHm_Chr7g0224241
rosa_laevigata	RLG00000001911
rosa_multiflora	Rmu_sc0008008.1_g000002 Rmu_sc0023501.1_g000004
rosa_roxburghii	Rroxscaffold_3G00235030
rosa_rugosa	Rorug07G0221600
rosa_samantha	Rh7AG366500 Rh7BG330000 Rh7BG357500 Rh7CG384800 Rh7DG360400
rosa_wichuraiana	Rw7G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	590
AciI	CCGC	8 cut(s)	77, 179, 239, 346, 526, 840, 1100, 1154
AclI	AACGTT	1 cut(s)	436
AclWI	GGATC	3 cut(s)	609, 614, 993
AcsI	RAATTY	4 cut(s)	202, 647, 862, 1297
AcuI	CTGAAG	3 cut(s)	162, 824, 951
AfaI	GTAC	1 cut(s)	879
AfeI	AGCGCT	1 cut(s)	411
AfiI	CCNNNNNNNGG	4 cut(s)	245, 714, 887, 1020
AflIII	ACRYGT	1 cut(s)	588
AgsI	TTSAA	9 cut(s)	168, 287, 383, 397, 477, 548, 605, 976, 1274
AhdI	GACNNNNNGTC	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	1375
AluBI	AGCT	4 cut(s)	171, 802, 900, 1056
AluI	AGCT	4 cut(s)	171, 802, 900, 1056
Alw26I	GTCTC	2 cut(s)	545, 770
AlwI	GGATC	3 cut(s)	609, 614, 993
Ama87I	CYCGRG	1 cut(s)	405
Aor51HI	AGCGCT	1 cut(s)	411
ApeKI	GCWGC	2 cut(s)	416, 1216
ApoI	RAATTY	4 cut(s)	202, 647, 862, 1297
Asp700I	GAANNNNTTC	2 cut(s)	436, 1339
AspLEI	GCGC	2 cut(s)	412, 1173
AspS9I	GGNCC	2 cut(s)	321, 1244
AsuHPI	GGTGA	3 cut(s)	227, 752, 835
AvaI	CYCGRG	1 cut(s)	405
AvaII	GGWCC	2 cut(s)	321, 1244
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	2 cut(s)	428, 1228
BccI	CCATC	5 cut(s)	352, 731, 881, 932, 1101
BciT130I	CCWGG	1 cut(s)	1377
BclI	TGATCA	1 cut(s)	424
BcoDI	GTCTC	2 cut(s)	545, 770
BfaI	CTAG	1 cut(s)	495
BfoI	RGCGCY	1 cut(s)	413
BisI	GCNGC	5 cut(s)	417, 840, 1100, 1155, 1217
BlsI	GCNGC	5 cut(s)	418, 841, 1101, 1156, 1218
Bme1390I	CCNGG	1 cut(s)	1377
Bme18I	GGWCC	2 cut(s)	321, 1244
BmeRI	GACNNNNNGTC	1 cut(s)	187
BmeT110I	CYCGRG	1 cut(s)	405
BmgT120I	GGNCC	2 cut(s)	321, 1244
BmrFI	CCNGG	1 cut(s)	1377
BmrI	ACTGGG	1 cut(s)	223
BmsI	GCATC	5 cut(s)	33, 142, 256, 575, 816
BmuI	ACTGGG	1 cut(s)	223
BoxI	GACNNNNGTC	1 cut(s)	1069
BpiI	GAAGAC	1 cut(s)	150
BpmI	CTGGAG	1 cut(s)	337
Bpu10I	CCTNAGC	1 cut(s)	1366
BpuEI	CTTGAG	1 cut(s)	746
BsaJI	CCNNGG	2 cut(s)	750, 1247
Bsc4I	CCNNNNNNNGG	4 cut(s)	245, 714, 887, 1020
Bse1I	ACTGG	4 cut(s)	229, 320, 1014, 1342
Bse3DI	GCAATG	3 cut(s)	72, 482, 937
BseBI	CCWGG	1 cut(s)	1377
BseDI	CCNNGG	2 cut(s)	750, 1247
BseGI	GGATG	5 cut(s)	36, 85, 91, 363, 1191
BseLI	CCNNNNNNNGG	4 cut(s)	245, 714, 887, 1020
BseMI	GCAATG	3 cut(s)	72, 482, 937
BseMII	CTCAG	5 cut(s)	189, 712, 849, 971, 1380
BseNI	ACTGG	4 cut(s)	229, 320, 1014, 1342
BseXI	GCAGC	2 cut(s)	428, 1228
BsgI	GTGCAG	1 cut(s)	767
Bsh1236I	CGCG	1 cut(s)	590
BsiHKCI	CYCGRG	1 cut(s)	405
BslFI	GGGAC	2 cut(s)	516, 1077
BslI	CCNNNNNNNGG	4 cut(s)	245, 714, 887, 1020
BsmAI	GTCTC	2 cut(s)	545, 770
BsmFI	GGGAC	2 cut(s)	516, 1077
BsmI	GAATGC	1 cut(s)	917
BsoBI	CYCGRG	1 cut(s)	405
Bsp143I	GATC	4 cut(s)	424, 614, 619, 985
BspACI	CCGC	8 cut(s)	77, 179, 239, 346, 526, 840, 1100, 1154
BspCNI	CTCAG	5 cut(s)	190, 711, 850, 970, 1379
BspFNI	CGCG	1 cut(s)	590
BspPI	GGATC	3 cut(s)	609, 614, 993
BsrDI	GCAATG	3 cut(s)	72, 482, 937
BsrI	ACTGG	4 cut(s)	229, 320, 1014, 1342
BssECI	CCNNGG	2 cut(s)	750, 1247
BssMI	GATC	4 cut(s)	424, 614, 619, 985
BssT1I	CCWWGG	2 cut(s)	750, 1247
Bst2UI	CCWGG	1 cut(s)	1377
Bst4CI	ACNGT	5 cut(s)	11, 187, 677, 1071, 1270
Bst6I	CTCTTC	1 cut(s)	543
BstAPI	GCANNNNNTGC	2 cut(s)	923, 1362
BstC8I	GCNNGC	4 cut(s)	414, 928, 1221, 1373
BstDEI	CTNAG	5 cut(s)	198, 698, 858, 957, 1366
BstF5I	GGATG	5 cut(s)	36, 85, 91, 363, 1191
BstFNI	CGCG	1 cut(s)	590
BstH2I	RGCGCY	1 cut(s)	413
BstHHI	GCGC	2 cut(s)	412, 1173
BstKTI	GATC	4 cut(s)	427, 617, 622, 988
BstMAI	GTCTC	2 cut(s)	545, 770
BstMBI	GATC	4 cut(s)	424, 614, 619, 985
BstMWI	GCNNNNNNNGC	5 cut(s)	266, 416, 923, 1034, 1362
BstNI	CCWGG	1 cut(s)	1377
BstNSI	RCATGY	1 cut(s)	761
BstPAI	GACNNNNGTC	1 cut(s)	1069
BstSCI	CCNGG	1 cut(s)	1375
BstUI	CGCG	1 cut(s)	590
BstV1I	GCAGC	2 cut(s)	428, 1228
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	2 cut(s)	614, 985
BstYI	RGATCY	2 cut(s)	614, 985
BtsCI	GGATG	5 cut(s)	36, 85, 91, 363, 1191
BtsI	GCAGTG	1 cut(s)	779
BtsIMutI	CAGTG	5 cut(s)	183, 195, 313, 682, 779
Cac8I	GCNNGC	4 cut(s)	414, 928, 1221, 1373
CfoI	GCGC	2 cut(s)	412, 1173
Cfr13I	GGNCC	2 cut(s)	321, 1244
Csp6I	GTAC	1 cut(s)	878
CviAII	CATG	3 cut(s)	127, 758, 1278
CviQI	GTAC	1 cut(s)	878
DdeI	CTNAG	5 cut(s)	198, 698, 858, 957, 1366
DpnI	GATC	4 cut(s)	426, 616, 621, 987
DpnII	GATC	4 cut(s)	424, 614, 619, 985
DriI	GACNNNNNGTC	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	543
Eam1105I	GACNNNNNGTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	543
Eco130I	CCWWGG	2 cut(s)	750, 1247
Eco47I	GGWCC	2 cut(s)	321, 1244
Eco47III	AGCGCT	1 cut(s)	411
Eco57I	CTGAAG	3 cut(s)	162, 824, 951
Eco88I	CYCGRG	1 cut(s)	405
EcoO109I	RGGNCCY	2 cut(s)	321, 1244
EcoRII	CCWGG	1 cut(s)	1375
EcoT14I	CCWWGG	2 cut(s)	750, 1247
EcoT22I	ATGCAT	1 cut(s)	271
ErhI	CCWWGG	2 cut(s)	750, 1247
FaeI	CATG	3 cut(s)	130, 761, 1281
FaqI	GGGAC	2 cut(s)	516, 1077
FatI	CATG	3 cut(s)	126, 757, 1277
FauNDI	CATATG	1 cut(s)	421
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	5 cut(s)	417, 840, 1100, 1155, 1217
FokI	GGATG	5 cut(s)	43, 92, 98, 370, 1198
Fsp4HI	GCNGC	5 cut(s)	417, 840, 1100, 1155, 1217
FspBI	CTAG	1 cut(s)	495
GlaI	GCGC	2 cut(s)	411, 1172
GluI	GCNGC	5 cut(s)	417, 840, 1100, 1155, 1217
GsuI	CTGGAG	1 cut(s)	337
HaeII	RGCGCY	1 cut(s)	413
HhaI	GCGC	2 cut(s)	412, 1173
Hin1II	CATG	3 cut(s)	130, 761, 1281
Hin6I	GCGC	2 cut(s)	410, 1171
HinP1I	GCGC	2 cut(s)	410, 1171
HincII	GTYRAC	2 cut(s)	91, 306
HindII	GTYRAC	2 cut(s)	91, 306
HinfI	GANTC	7 cut(s)	146, 224, 383, 467, 1112, 1207, 1274
HphI	GGTGA	3 cut(s)	227, 752, 835
Hpy166II	GTNNAC	3 cut(s)	91, 306, 796
Hpy188I	TCNGA	7 cut(s)	151, 193, 619, 859, 970, 1042, 1345
Hpy188III	TCNNGA	8 cut(s)	28, 43, 405, 623, 725, 734, 775, 1141
Hpy8I	GTNNAC	3 cut(s)	91, 306, 796
HpyAV	CCTTC	5 cut(s)	124, 206, 1154, 1223, 1235
HpyCH4III	ACNGT	5 cut(s)	11, 187, 677, 1071, 1270
HpyCH4IV	ACGT	2 cut(s)	331, 436
HpyF10VI	GCNNNNNNNGC	5 cut(s)	266, 416, 923, 1034, 1362
HpyF3I	CTNAG	5 cut(s)	198, 698, 858, 957, 1366
HpySE526I	ACGT	2 cut(s)	331, 436
Hsp92II	CATG	3 cut(s)	130, 761, 1281
HspAI	GCGC	2 cut(s)	410, 1171
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	4 cut(s)	424, 614, 619, 985
LmnI	GCTCC	4 cut(s)	176, 754, 1327, 1353
Lsp1109I	GCAGC	2 cut(s)	428, 1228
LweI	GCATC	5 cut(s)	33, 142, 256, 575, 816
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	2 cut(s)	331, 436
MaeIII	GTNAC	3 cut(s)	5, 11, 1190
MalI	GATC	4 cut(s)	426, 616, 621, 987
MboI	GATC	4 cut(s)	424, 614, 619, 985
MflI	RGATCY	2 cut(s)	614, 985
MluI	ACGCGT	1 cut(s)	588
MlyI	GAGTC	1 cut(s)	140
MnlI	CCTC	8 cut(s)	52, 285, 312, 522, 865, 1018, 1219, 1316
Mph1103I	ATGCAT	1 cut(s)	271
MroXI	GAANNNNTTC	2 cut(s)	436, 1339
MseI	TTAA	2 cut(s)	65, 372
MslI	CAYNNNNRTG	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	1377
Mva1269I	GAATGC	1 cut(s)	917
MvaI	CCWGG	1 cut(s)	1377
MvnI	CGCG	1 cut(s)	590
MwoI	GCNNNNNNNGC	5 cut(s)	266, 416, 923, 1034, 1362
NdeI	CATATG	1 cut(s)	421
NdeII	GATC	4 cut(s)	424, 614, 619, 985
NlaIII	CATG	3 cut(s)	130, 761, 1281
NmuCI	GTSAC	2 cut(s)	11, 1190
NsiI	ATGCAT	1 cut(s)	271
NspI	RCATGY	1 cut(s)	761
PctI	GAATGC	1 cut(s)	917
PdmI	GAANNNNTTC	2 cut(s)	436, 1339
PfeI	GAWTC	6 cut(s)	224, 383, 467, 1112, 1207, 1274
PkrI	GCNGC	5 cut(s)	418, 841, 1101, 1156, 1218
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
PpuMI	RGGWCCY	2 cut(s)	321, 1244
PshAI	GACNNNNGTC	1 cut(s)	1069
Psp1406I	AACGTT	1 cut(s)	436
Psp5II	RGGWCCY	2 cut(s)	321, 1244
Psp6I	CCWGG	1 cut(s)	1375
PspGI	CCWGG	1 cut(s)	1375
PspPI	GGNCC	2 cut(s)	321, 1244
PspPPI	RGGWCCY	2 cut(s)	321, 1244
PsuI	RGATCY	2 cut(s)	614, 985
RsaI	GTAC	1 cut(s)	879
RsaNI	GTAC	1 cut(s)	878
RseI	CAYNNNNRTG	1 cut(s)	29
SaqAI	TTAA	2 cut(s)	65, 372
SatI	GCNGC	5 cut(s)	417, 840, 1100, 1155, 1217
Sau3AI	GATC	4 cut(s)	424, 614, 619, 985
Sau96I	GGNCC	2 cut(s)	321, 1244
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	1377
SetI	ASST	9 cut(s)	173, 217, 326, 334, 439, 804, 902, 1058, 1246
SfaNI	GCATC	5 cut(s)	33, 142, 256, 575, 816
SinI	GGWCC	2 cut(s)	321, 1244
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	725
SmoI	CTYRAG	1 cut(s)	725
SsiI	CCGC	8 cut(s)	77, 179, 239, 346, 526, 840, 1100, 1154
SspI	AATATT	2 cut(s)	164, 979
SspMI	CTAG	1 cut(s)	495
StyD4I	CCNGG	1 cut(s)	1375
StyI	CCWWGG	2 cut(s)	750, 1247
TaaI	ACNGT	5 cut(s)	11, 187, 677, 1071, 1270
TaiI	ACGT	2 cut(s)	334, 439
TaqI	TCGA	3 cut(s)	99, 733, 774
TauI	GCSGC	3 cut(s)	842, 1102, 1157
TfiI	GAWTC	6 cut(s)	224, 383, 467, 1112, 1207, 1274
Tru1I	TTAA	2 cut(s)	65, 372
Tru9I	TTAA	2 cut(s)	65, 372
TscAI	CASTG	5 cut(s)	190, 202, 320, 682, 786
TseFI	GTSAC	2 cut(s)	11, 1190
TseI	GCWGC	2 cut(s)	416, 1216
Tsp45I	GTSAC	2 cut(s)	11, 1190
TspDTI	ATGAA	3 cut(s)	47, 143, 1251
TspGWI	ACGGA	1 cut(s)	63
TspRI	CASTG	5 cut(s)	190, 202, 320, 682, 786
VpaK11BI	GGWCC	2 cut(s)	321, 1244
XapI	RAATTY	4 cut(s)	202, 647, 862, 1297
XceI	RCATGY	1 cut(s)	761
XmnI	GAANNNNTTC	2 cut(s)	436, 1339
XspI	CTAG	1 cut(s)	495
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.