pycom04g04340

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
3891889 .. 3894768
2880 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g04340.4

Sequence Viewer

Length: 1533 bp
ATGGCTCCTGCCCAACCAGACATGGAGGCTGACCAGCTCCAAGACTGCAAACCATTTGTCAACCCAAAAGTTGAACTTGTTGATGATGATACAGATATCAGAAGGGCTTCCTTGCCAAACTCTGCTTCGGCATCGGAGGGAAAACACATGGCTCCAGTCGTCGACATTGATATAATTCAGTGCACAAGTAATCAGGACAGTACTCAGCCTGATCCCGATGCAACGGATGAATATTCAACCTCATTTGCCGGCACTACGTCCGACACTGACAATTTTTCTGGATTTTGTGAAGAAGGTGAAGTGCAGTCACACTCGTTTGAGGACAATGCTATGACATCTTCTTTTGATGCATTTGCGAGTACATTTCAAACCAGGAAGAAGAAGTTGACAAATCACTGGAGGAGCTTTATACGTCCTGTAATGTGGCGCTGCAAATGGATGGAATTGAGAATCAAAGAAATTGAAGCACAAGCACTAAAGTATTCCAGAGACCTTCGAGTAGCATATGATAAAAAAAGACATACAGGATTCGACCAACGTACTTTGGAAGAATTTGGTTCAAAATCATTGCCATTTTGCAGTCAACTCCGCAGAAAGAAAGCTATGAAGAGGAGGAAACGCAAGAGAGTTGAAGACACAACTGATATAGCATCATACATCTCAAATCATAATGTCTTTTCCTATCTTGAAAATAAAAGATCCGATCCTGACAGCACGTCCATTGCTGATGACTTTAATAATGCAGTAATCACAGAGCAGAGTGCTGATTACAATGATAAACTCGGTACTGGTGATAACTGGGCATTCTTTGAGTACCGAGATGGTGACAAGTCTTTGGAGCATGTCCTTTGGAAAATTGAGACAGTGCACTATCGGGTTCACAAGTTAAAGTATCAAATGGATTTGGTGATGTCCAAAAATGCTGCTAGGTTTTCTTCCAGCGAAAATTTGAGCGTTCTTGTACCCTGTGATGCACAGACCAGCTCTGCACATAGTCCAGCATTGTCTCCTGGCAATGGAGAAACAAACTCTGCGGGAGCTATATATACTTCAGCTCAACATGTATCAGGCTACAATGTTGGGGATCTCGCAAAGCCTGAAAGTGTAGTCTCAAGTTTTGTGGAGGGAATCACTGTTCCTGATATAATTGAAAGCACTGTGGGACTACCGTCTGCTGTTGACGTTACCTTCCATCAGCCACAGTTCGGAGACTCAAGCGAAGATATTGTGGATAATGTCCTGACACATAATGAGGCTGCTGAAGCAGAGAAGCGCGCTTTCCAAATGATCAACGACCAACCTAAAGAGGAACATCAGCAACCAGAGAAAGACTTACAAGAAGCCGTTTTTCCAACTCCACAATCAGAACCTGCTCCATCGGCAGAAGTTGCTGTTCCTCAGGAACAATCAACTCTAGAGTCATGCTTGGCTTCCGATGTAAATTTTCCTAGAAACAAGAGAAAGCGAGGGGAGCGGAAAGCAGGTTCAGTTGTTTGGAGCAAGAAATGCTCAGGCGAGCCCGATAGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

511

Amino Acids

57.06

Weight (kDa)

5.1

Isoelectric Point (pI)

53.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1378, 1472
AccBSI CCGCTC 1 cut(s) 1474
AccI GTMKAC 1 cut(s) 162
AccII CGCG 1 cut(s) 1275
AciI CCGC 3 cut(s) 589, 1034, 1474
AclWI GGATC 4 cut(s) 206, 693, 698, 1092
AcsI RAATTY 3 cut(s) 551, 946, 1441
AcuI CTGAAG 2 cut(s) 1035, 1281
AfaI GTAC 6 cut(s) 202, 361, 541, 787, 815, 963
AfiI CCNNNNNNNGG 2 cut(s) 1016, 1205
AflIII ACRYGT 1 cut(s) 1060
AgsI TTSAA 8 cut(s) 74, 237, 368, 464, 561, 632, 689, 1151
AhdI GACNNNNNGTC 1 cut(s) 715
AjiI CACGTC 1 cut(s) 717
AjnI CCWGG 2 cut(s) 371, 1009
AjuI GAANNNNNNNTTGG 2 cut(s) 109, 141
AloI GAACNNNNNNTCC 4 cut(s) 1119, 1151, 1468, 1500
AluBI AGCT 6 cut(s) 37, 405, 602, 984, 1040, 1055
AluI AGCT 6 cut(s) 37, 405, 602, 984, 1040, 1055
Alw21I GWGCWC 2 cut(s) 185, 870
Alw26I GTCTC 5 cut(s) 483, 854, 1011, 1114, 1203
Alw44I GTGCAC 2 cut(s) 181, 866
AlwI GGATC 4 cut(s) 206, 693, 698, 1092
AlwNI CAGNNNCTG 1 cut(s) 1370
ApaLI GTGCAC 2 cut(s) 181, 866
ApeKI GCWGC 3 cut(s) 429, 923, 1256
ApoI RAATTY 3 cut(s) 551, 946, 1441
ArsI GACNNNNNNTTYG 2 cut(s) 42, 74
Asp700I GAANNNNTTC 1 cut(s) 106
AspLEI GCGC 3 cut(s) 429, 1275, 1277
AsuHPI GGTGA 4 cut(s) 308, 803, 836, 919
AxyI CCTNAGG 1 cut(s) 1398
BaeGI GKGCMC 2 cut(s) 185, 870
BanII GRGCYC 1 cut(s) 1521
BbsI GAAGAC 1 cut(s) 639
Bbv12I GWGCWC 2 cut(s) 185, 870
BbvI GCAGC 3 cut(s) 416, 910, 1243
BccI CCATC 4 cut(s) 433, 815, 1200, 1384
BceAI ACGGC 1 cut(s) 1328
BciT130I CCWGG 2 cut(s) 373, 1011
BclI TGATCA 1 cut(s) 1287
BcoDI GTCTC 5 cut(s) 483, 854, 1011, 1114, 1203
BfaI CTAG 3 cut(s) 927, 1415, 1449
BfoI RGCGCY 1 cut(s) 430
BfuAI ACCTGC 2 cut(s) 1378, 1472
BisI GCNGC 3 cut(s) 430, 924, 1257
BlsI GCNGC 3 cut(s) 431, 925, 1258
BmcAI AGTACT 1 cut(s) 202
Bme1390I CCNGG 2 cut(s) 373, 1011
BmeRI GACNNNNNGTC 1 cut(s) 715
BmgBI CACGTC 1 cut(s) 717
BmiI GGNNCC 2 cut(s) 6, 153
BmrFI CCNGG 2 cut(s) 373, 1011
BmrI ACTGGG 1 cut(s) 808
BmsI GCATC 5 cut(s) 140, 208, 337, 659, 961
BmuI ACTGGG 1 cut(s) 808
BoxI GACNNNNGTC 1 cut(s) 1168
BpiI GAAGAC 1 cut(s) 639
BpmI CTGGAG 2 cut(s) 138, 418
Bpu10I CCTNAGC 1 cut(s) 1510
BpuEI CTTGAG 2 cut(s) 1096, 1198
BsaI GGTCTC 1 cut(s) 483
Bsc4I CCNNNNNNNGG 2 cut(s) 1016, 1205
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 4 cut(s) 155, 401, 793, 803
Bse21I CCTNAGG 1 cut(s) 1398
Bse3DI GCAATG 3 cut(s) 566, 720, 1021
BseBI CCWGG 2 cut(s) 373, 1011
BseGI GGATG 2 cut(s) 232, 444
BseLI CCNNNNNNNGG 2 cut(s) 1016, 1205
BseMI GCAATG 3 cut(s) 566, 720, 1021
BseMII CTCAG 3 cut(s) 218, 1412, 1524
BseNI ACTGG 4 cut(s) 155, 401, 793, 803
BsePI GCGCGC 1 cut(s) 1273
BseRI GAGGAG 2 cut(s) 415, 625
BseSI GKGCMC 2 cut(s) 185, 870
BseXI GCAGC 3 cut(s) 416, 910, 1243
BsgI GTGCAG 2 cut(s) 323, 972
Bsh1236I CGCG 1 cut(s) 1275
BsiHKAI GWGCWC 2 cut(s) 185, 870
BsiSI CCGG 1 cut(s) 249
BslFI GGGAC 1 cut(s) 1176
BslI CCNNNNNNNGG 2 cut(s) 1016, 1205
BsmAI GTCTC 5 cut(s) 483, 854, 1011, 1114, 1203
BsmFI GGGAC 1 cut(s) 1176
BsmI GAATGC 1 cut(s) 803
Bso31I GGTCTC 1 cut(s) 483
Bsp1286I GDGCHC 3 cut(s) 185, 870, 1521
Bsp143I GATC 5 cut(s) 211, 698, 703, 1084, 1287
BspACI CCGC 3 cut(s) 589, 1034, 1474
BspCNI CTCAG 3 cut(s) 217, 1411, 1523
BspFNI CGCG 1 cut(s) 1275
BspLI GGNNCC 2 cut(s) 6, 153
BspMI ACCTGC 2 cut(s) 1378, 1472
BspPI GGATC 4 cut(s) 206, 693, 698, 1092
BspTNI GGTCTC 1 cut(s) 483
BsrBI CCGCTC 1 cut(s) 1474
BsrDI GCAATG 3 cut(s) 566, 720, 1021
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 4 cut(s) 155, 401, 793, 803
BssAI RCCGGY 1 cut(s) 248
BssHII GCGCGC 1 cut(s) 1273
BssMI GATC 5 cut(s) 211, 698, 703, 1084, 1287
Bst2UI CCWGG 2 cut(s) 373, 1011
Bst4CI ACNGT 6 cut(s) 200, 865, 1135, 1159, 1170, 1203
Bst6I CTCTTC 1 cut(s) 602
BstAPI GCANNNNNTGC 2 cut(s) 1388, 1506
BstC8I GCNNGC 3 cut(s) 250, 1275, 1517
BstDEI CTNAG 3 cut(s) 204, 1398, 1510
BstF5I GGATG 2 cut(s) 232, 444
BstFNI CGCG 1 cut(s) 1275
BstH2I RGCGCY 1 cut(s) 430
BstHHI GCGC 3 cut(s) 429, 1275, 1277
BstKTI GATC 5 cut(s) 214, 701, 706, 1087, 1290
BstMAI GTCTC 5 cut(s) 483, 854, 1011, 1114, 1203
BstMBI GATC 5 cut(s) 211, 698, 703, 1084, 1287
BstMWI GCNNNNNNNGC 5 cut(s) 1262, 1379, 1388, 1471, 1506
BstNI CCWGG 2 cut(s) 373, 1011
BstNSI RCATGY 2 cut(s) 845, 1064
BstPAI GACNNNNGTC 1 cut(s) 1168
BstSCI CCNGG 2 cut(s) 371, 1009
BstSLI GKGCMC 2 cut(s) 185, 870
BstUI CGCG 1 cut(s) 1275
BstV1I GCAGC 3 cut(s) 416, 910, 1243
BstV2I GAAGAC 1 cut(s) 639
BstX2I RGATCY 2 cut(s) 698, 1084
BstYI RGATCY 2 cut(s) 698, 1084
Bsu36I CCTNAGG 1 cut(s) 1398
BtrI CACGTC 1 cut(s) 717
BtsCI GGATG 2 cut(s) 232, 444
BtsIMutI CAGTG 6 cut(s) 185, 264, 394, 870, 1131, 1155
BveI ACCTGC 2 cut(s) 1378, 1472
Cac8I GCNNGC 3 cut(s) 250, 1275, 1517
CaiI CAGNNNCTG 1 cut(s) 1370
CfoI GCGC 3 cut(s) 429, 1275, 1277
Cfr10I RCCGGY 1 cut(s) 248
Csp6I GTAC 6 cut(s) 201, 360, 540, 786, 814, 962
CspCI CAANNNNNGTGG 2 cut(s) 1101, 1136
CviAII CATG 5 cut(s) 22, 148, 842, 1061, 1422
CviQI GTAC 6 cut(s) 201, 360, 540, 786, 814, 962
DdeI CTNAG 3 cut(s) 204, 1398, 1510
DpnI GATC 5 cut(s) 213, 700, 705, 1086, 1289
DpnII GATC 5 cut(s) 211, 698, 703, 1084, 1287
DriI GACNNNNNGTC 1 cut(s) 715
Eam1104I CTCTTC 1 cut(s) 602
Eam1105I GACNNNNNGTC 1 cut(s) 715
EarI CTCTTC 1 cut(s) 602
Eco24I GRGCYC 1 cut(s) 1521
Eco31I GGTCTC 1 cut(s) 483
Eco32I GATATC 1 cut(s) 97
Eco57I CTGAAG 2 cut(s) 1035, 1281
Eco81I CCTNAGG 1 cut(s) 1398
EcoRII CCWGG 2 cut(s) 371, 1009
EcoRV GATATC 1 cut(s) 97
EcoT22I ATGCAT 1 cut(s) 352
EcoT38I GRGCYC 1 cut(s) 1521
FaeI CATG 5 cut(s) 25, 151, 845, 1064, 1425
FalI AAGNNNNNCTT 2 cut(s) 60, 92
FaqI GGGAC 1 cut(s) 1176
FatI CATG 5 cut(s) 21, 147, 841, 1060, 1421
FauI CCCGC 1 cut(s) 1027
FauNDI CATATG 1 cut(s) 505
FbaI TGATCA 1 cut(s) 1287
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 3 cut(s) 430, 924, 1257
FokI GGATG 2 cut(s) 239, 451
FriOI GRGCYC 1 cut(s) 1521
Fsp4HI GCNGC 3 cut(s) 430, 924, 1257
FspBI CTAG 3 cut(s) 927, 1415, 1449
GlaI GCGC 3 cut(s) 428, 1274, 1276
GluI GCNGC 3 cut(s) 430, 924, 1257
GsuI CTGGAG 2 cut(s) 138, 418
HaeII RGCGCY 1 cut(s) 430
HapII CCGG 1 cut(s) 249
HhaI GCGC 3 cut(s) 429, 1275, 1277
Hin1II CATG 5 cut(s) 25, 151, 845, 1064, 1425
Hin6I GCGC 3 cut(s) 427, 1273, 1275
HinP1I GCGC 3 cut(s) 427, 1273, 1275
HincII GTYRAC 5 cut(s) 61, 163, 387, 584, 1180
HindII GTYRAC 5 cut(s) 61, 163, 387, 584, 1180
HinfI GANTC 5 cut(s) 450, 528, 1128, 1211, 1418
HpaII CCGG 1 cut(s) 249
HphI GGTGA 4 cut(s) 308, 803, 836, 919
Hpy166II GTNNAC 8 cut(s) 61, 163, 183, 387, 584, 868, 880, 1180
Hpy188I TCNGA 7 cut(s) 101, 136, 262, 703, 1208, 1366, 1435
Hpy8I GTNNAC 8 cut(s) 61, 163, 183, 387, 584, 868, 880, 1180
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 4 cut(s) 96, 287, 503, 1198
HpyCH4III ACNGT 6 cut(s) 200, 865, 1135, 1159, 1170, 1203
HpyCH4IV ACGT 5 cut(s) 257, 412, 538, 716, 1182
HpyF10VI GCNNNNNNNGC 5 cut(s) 1262, 1379, 1388, 1471, 1506
HpyF3I CTNAG 3 cut(s) 204, 1398, 1510
HpySE526I ACGT 5 cut(s) 257, 412, 538, 716, 1182
Hsp92II CATG 5 cut(s) 25, 151, 845, 1064, 1425
HspAI GCGC 3 cut(s) 427, 1273, 1275
KroI GCCGGC 1 cut(s) 248
KroNI GCCGGC 1 cut(s) 250
Ksp22I TGATCA 1 cut(s) 1287
Kzo9I GATC 5 cut(s) 211, 698, 703, 1084, 1287
LmnI GCTCC 9 cut(s) 10, 42, 157, 402, 838, 1037, 1378, 1471, 1497
Lsp1109I GCAGC 3 cut(s) 416, 910, 1243
LweI GCATC 5 cut(s) 140, 208, 337, 659, 961
MaeI CTAG 3 cut(s) 927, 1415, 1449
MaeII ACGT 5 cut(s) 257, 412, 538, 716, 1182
MaeIII GTNAC 3 cut(s) 306, 824, 1183
MalI GATC 5 cut(s) 213, 700, 705, 1086, 1289
MbiI CCGCTC 1 cut(s) 1474
MboI GATC 5 cut(s) 211, 698, 703, 1084, 1287
MboII GAAGA 9 cut(s) 302, 330, 388, 391, 560, 619, 644, 927, 1232
MflI RGATCY 2 cut(s) 698, 1084
MhlI GDGCHC 3 cut(s) 185, 870, 1521
MluCI AATT 9 cut(s) 174, 271, 443, 459, 551, 855, 946, 1146, 1441
MlyI GAGTC 2 cut(s) 1205, 1427
MmeI TCCRAC 2 cut(s) 285, 1376
Mph1103I ATGCAT 1 cut(s) 352
MroNI GCCGGC 1 cut(s) 248
MroXI GAANNNNTTC 1 cut(s) 106
MseI TTAA 2 cut(s) 735, 887
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 2 cut(s) 373, 1011
Mva1269I GAATGC 1 cut(s) 803
MvaI CCWGG 2 cut(s) 373, 1011
MvnI CGCG 1 cut(s) 1275
MwoI GCNNNNNNNGC 5 cut(s) 1262, 1379, 1388, 1471, 1506
NaeI GCCGGC 1 cut(s) 250
NdeI CATATG 1 cut(s) 505
NdeII GATC 5 cut(s) 211, 698, 703, 1084, 1287
NgoMIV GCCGGC 1 cut(s) 248
NlaIII CATG 5 cut(s) 25, 151, 845, 1064, 1425
NlaIV GGNNCC 2 cut(s) 6, 153
NmuCI GTSAC 2 cut(s) 306, 824
NsiI ATGCAT 1 cut(s) 352
NspI RCATGY 2 cut(s) 845, 1064
PauI GCGCGC 1 cut(s) 1273
PciI ACATGT 1 cut(s) 1060
PctI GAATGC 1 cut(s) 803
PdiI GCCGGC 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 106
PfeI GAWTC 3 cut(s) 450, 528, 1128
PkrI GCNGC 3 cut(s) 431, 925, 1258
PleI GAGTC 2 cut(s) 1205, 1426
PpsI GAGTC 2 cut(s) 1205, 1426
PscI ACATGT 1 cut(s) 1060
PshAI GACNNNNGTC 1 cut(s) 1168
Psp6I CCWGG 2 cut(s) 371, 1009
PspGI CCWGG 2 cut(s) 371, 1009
PspN4I GGNNCC 2 cut(s) 6, 153
PstNI CAGNNNCTG 1 cut(s) 1370
PsuI RGATCY 2 cut(s) 698, 1084
PteI GCGCGC 1 cut(s) 1273
RsaI GTAC 6 cut(s) 202, 361, 541, 787, 815, 963
RsaNI GTAC 6 cut(s) 201, 360, 540, 786, 814, 962
SalI GTCGAC 1 cut(s) 161
SaqAI TTAA 2 cut(s) 735, 887
SatI GCNGC 3 cut(s) 430, 924, 1257
Sau3AI GATC 5 cut(s) 211, 698, 703, 1084, 1287
ScaI AGTACT 1 cut(s) 202
SchI GAGTC 2 cut(s) 1205, 1427
ScrFI CCNGG 2 cut(s) 373, 1011
SduI GDGCHC 3 cut(s) 185, 870, 1521
SfaNI GCATC 5 cut(s) 140, 208, 337, 659, 961
SmlI CTYRAG 2 cut(s) 1111, 1213
SmoI CTYRAG 2 cut(s) 1111, 1213
Sse9I AATT 9 cut(s) 174, 271, 443, 459, 551, 855, 946, 1146, 1441
SsiI CCGC 3 cut(s) 589, 1034, 1474
SspI AATATT 1 cut(s) 233
SspMI CTAG 3 cut(s) 927, 1415, 1449
StyD4I CCNGG 2 cut(s) 371, 1009
TaaI ACNGT 6 cut(s) 200, 865, 1135, 1159, 1170, 1203
TaiI ACGT 5 cut(s) 260, 415, 541, 719, 1185
TaqI TCGA 3 cut(s) 162, 496, 531
TasI AATT 9 cut(s) 174, 271, 443, 459, 551, 855, 946, 1146, 1441
TatI WGTACW 2 cut(s) 200, 359
TfiI GAWTC 3 cut(s) 450, 528, 1128
Tru1I TTAA 2 cut(s) 735, 887
Tru9I TTAA 2 cut(s) 735, 887
TscAI CASTG 6 cut(s) 185, 271, 401, 870, 1138, 1162
TseFI GTSAC 2 cut(s) 306, 824
TseI GCWGC 3 cut(s) 429, 923, 1256
Tsp45I GTSAC 2 cut(s) 306, 824
TspDTI ATGAA 2 cut(s) 243, 620
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 6 cut(s) 185, 271, 401, 870, 1138, 1162
VneI GTGCAC 2 cut(s) 181, 866
XapI RAATTY 3 cut(s) 551, 946, 1441
XbaI TCTAGA 1 cut(s) 1414
XceI RCATGY 2 cut(s) 845, 1064
XmiI GTMKAC 1 cut(s) 162
XmnI GAANNNNTTC 1 cut(s) 106
XspI CTAG 3 cut(s) 927, 1415, 1449
ZrmI AGTACT 1 cut(s) 202
Zsp2I ATGCAT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.