RLG00000001911

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009839
Physical Location & Seq
Forward (+)
22929511 .. 22933773
4263 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001911

Sequence Viewer

Length: 1515 bp
ATGGCACCTGTCCAACCATTTACAGACATTGACCAAGACAGTAAACCATGTATAAATGCAAAAGTTGAACTGCATACAGAGAACGGGAATTCCCTAGAAACCTCATCTTTGGAGGGGATACCGTGCATGAGTAACCGTGACGACAACTGCATCAGGATGAAATCTGTCCTGAATGGAAATGATGAGGCTTTAATGTGCATTGCGGATGTGGATGTTGACATAATCGAATGTGGAAATAATCATAACCACAGCTTGAGGGCTGAAACTGAAGACCCTGATGCGACTGAATATTCAAGCTCCTTTGCGGACACTGTGTCTGACACTGAGAATTTTAGTGAAGGTGAAGTGGAATCCCAGTCCTTTCCGCAGAATGGTTTGACATCTGCTTTTGATGCATTTAGTAGTGCATTTCAAATGAGGAAGAAGAAGTTGACAAATCACTGGAGGACCTTTATACGTCCTGTGATGTGGCGGTGCAAATGGATGGAATTGAGAATTAAAGAAATTGAATCACAAGAATTGAATTATTCCCGAGCGCTTGCAGCATATGATCAAAGAAAACGTTTAGCATTCGACCAATTTATATTAGAAGAATCCGGTTCAAAGTCATTGCCATTTTCTAGTCAGGGCCTACGAAAAAAATCTATCAAGCGGAGGAAACGCAAGAGAATTGAAGAGACAACAGATATTGCATCGTATATATCACATCATAACGCGTTTTCCTATTTCGAAAATAAGAGATCCGATCCTGATAGCACATCTCTGGCTGACGAATTTAGTAATGCAGTAATCACAGAACACAGTGCTGATTACAATGATAAACTCAGCACAGCCGATGAGTGGTCGCTCCTTGAGTTTCGAGATGGTGATAAATCCTTGGAGCATGTCCTTTGGAAAATCGAGACACTGCACTCTTGGGTTCACAAGCTGAAGAATCAAATTGATGTGGTGATGCCCAAAACTGCTGCTATATTTTCTTCCTCCGAGAATTTGAGCATTATTGTACCCTGTGATGGACAGACCAGCTCTGCCCATAGTCCAGCATTCTCTGCTGGCAATGGAGATGGAATATATGCTACAACTCAGCAAACTTCAGAGTTCAATATTGGGGATCTGGTAATGCCTGAAAGTGTAGTTTCCAGTTTTGGGGACGCTATCCCTGCTCCTGATATAATAGAAAGCTCTGTGGGACTACTGTCTGCTACTGATGCCATCTTCAATCGGCCGCAGTTTAGTGAATCAAGTGAAGATATTGTGGATAATGTCTTGATACATAATGCGGCAGAAGGAGAGAAGCGCACTTTCCAAAGGATGAGTGAGGAACCCAAAGAGAATCATCAGCAGCAACCAGAGGAAGGCAAACAAGAAGGGCCTTGTGCAACTCCTTCATCGACTGTTGAATCATGTTTAGGATTTGATGTAAATTTTCCAAGAAACAAGAGAAAAAGAGGGGAGCGAAGAACCGGTTCAGATGTTTGGAGCAAGAAATGCTCAGGCGAGCCTGGTAGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

505

Amino Acids

56.42

Weight (kDa)

4.98

Isoelectric Point (pI)

57.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 716
AciI CCGC 7 cut(s) 203, 305, 365, 472, 652, 1226, 1280
AclI AACGTT 1 cut(s) 562
AclWI GGATC 3 cut(s) 735, 740, 1119
AcoI YGGCCR 1 cut(s) 1223
AcsI RAATTY 5 cut(s) 88, 328, 773, 988, 1423
AcuI CTGAAG 3 cut(s) 288, 950, 1077
AfaI GTAC 1 cut(s) 1005
AfeI AGCGCT 1 cut(s) 537
AfiI CCNNNNNNNGG 5 cut(s) 371, 840, 1013, 1146, 1355
AflIII ACRYGT 1 cut(s) 714
AgeI ACCGGT 1 cut(s) 1463
AhdI GACNNNNNGTC 1 cut(s) 313
AjnI CCWGG 1 cut(s) 1501
AloI GAACNNNNNNTCC 2 cut(s) 74, 106
AluBI AGCT 5 cut(s) 252, 297, 928, 1026, 1182
AluI AGCT 5 cut(s) 252, 297, 928, 1026, 1182
Alw26I GTCTC 2 cut(s) 671, 896
AlwI GGATC 3 cut(s) 735, 740, 1119
Ama87I CYCGRG 1 cut(s) 531
Aor51HI AGCGCT 1 cut(s) 537
AoxI GGCC 3 cut(s) 628, 1223, 1370
ApeKI GCWGC 3 cut(s) 542, 965, 1342
ApoI RAATTY 5 cut(s) 88, 328, 773, 988, 1423
AsiGI ACCGGT 1 cut(s) 1463
Asp700I GAANNNNTTC 1 cut(s) 1465
AspLEI GCGC 2 cut(s) 538, 1299
AspS9I GGNCC 3 cut(s) 447, 628, 1370
AsuHPI GGTGA 3 cut(s) 353, 878, 961
AsuII TTCGAA 1 cut(s) 729
AvaI CYCGRG 1 cut(s) 531
AvaII GGWCC 1 cut(s) 447
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 276
BbvI GCAGC 3 cut(s) 554, 952, 1354
BccI CCATC 5 cut(s) 478, 857, 1007, 1058, 1220
BciT130I CCWGG 1 cut(s) 1503
BciVI GTATCC 1 cut(s) 111
BclI TGATCA 1 cut(s) 550
BcoDI GTCTC 2 cut(s) 671, 896
BfaI CTAG 2 cut(s) 95, 621
BfoI RGCGCY 1 cut(s) 539
BfuI GTATCC 1 cut(s) 111
BisI GCNGC 5 cut(s) 543, 966, 1226, 1281, 1343
BlsI GCNGC 5 cut(s) 544, 967, 1227, 1282, 1344
Bme1390I CCNGG 1 cut(s) 1503
Bme18I GGWCC 1 cut(s) 447
BmeRI GACNNNNNGTC 1 cut(s) 313
BmeT110I CYCGRG 1 cut(s) 531
BmgT120I GGNCC 3 cut(s) 447, 628, 1370
BmiI GGNNCC 2 cut(s) 6, 1323
BmrFI CCNGG 1 cut(s) 1503
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 6 cut(s) 159, 268, 382, 701, 942, 1198
BmuI ACTGGG 1 cut(s) 349
BoxI GACNNNNGTC 1 cut(s) 1195
BpiI GAAGAC 1 cut(s) 276
BpmI CTGGAG 1 cut(s) 463
Bpu10I CCTNAGC 1 cut(s) 1492
Bpu14I TTCGAA 1 cut(s) 729
BpuEI CTTGAG 2 cut(s) 274, 872
BsaJI CCNNGG 1 cut(s) 876
BsaWI WCCGGW 2 cut(s) 596, 1463
Bsc4I CCNNNNNNNGG 5 cut(s) 371, 840, 1013, 1146, 1355
Bse118I RCCGGY 1 cut(s) 1463
Bse1I ACTGG 3 cut(s) 355, 446, 1140
Bse3DI GCAATG 3 cut(s) 198, 608, 1063
BseBI CCWGG 1 cut(s) 1503
BseDI CCNNGG 1 cut(s) 876
BseGI GGATG 5 cut(s) 162, 211, 217, 489, 1317
BseLI CCNNNNNNNGG 5 cut(s) 371, 840, 1013, 1146, 1355
BseMI GCAATG 3 cut(s) 198, 608, 1063
BseMII CTCAG 4 cut(s) 315, 838, 1097, 1506
BseNI ACTGG 3 cut(s) 355, 446, 1140
BseX3I CGGCCG 1 cut(s) 1223
BseXI GCAGC 3 cut(s) 554, 952, 1354
BsgI GTGCAG 1 cut(s) 893
Bsh1236I CGCG 1 cut(s) 716
Bsh1285I CGRYCG 1 cut(s) 1226
BshFI GGCC 3 cut(s) 630, 1225, 1372
BshNI GGYRCC 1 cut(s) 4
BshTI ACCGGT 1 cut(s) 1463
BsiEI CGRYCG 1 cut(s) 1226
BsiHKCI CYCGRG 1 cut(s) 531
BsiSI CCGG 2 cut(s) 597, 1464
BslFI GGGAC 2 cut(s) 1163, 1203
BslI CCNNNNNNNGG 5 cut(s) 371, 840, 1013, 1146, 1355
BsmAI GTCTC 2 cut(s) 671, 896
BsmFI GGGAC 2 cut(s) 1163, 1203
BsmI GAATGC 2 cut(s) 569, 1043
BsnI GGCC 3 cut(s) 630, 1225, 1372
BsoBI CYCGRG 1 cut(s) 531
Bsp119I TTCGAA 1 cut(s) 729
Bsp143I GATC 4 cut(s) 550, 740, 745, 1111
BspACI CCGC 7 cut(s) 203, 305, 365, 472, 652, 1226, 1280
BspANI GGCC 3 cut(s) 630, 1225, 1372
BspCNI CTCAG 4 cut(s) 316, 837, 1096, 1505
BspFNI CGCG 1 cut(s) 716
BspLI GGNNCC 2 cut(s) 6, 1323
BspPI GGATC 3 cut(s) 735, 740, 1119
BspT104I TTCGAA 1 cut(s) 729
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 3 cut(s) 198, 608, 1063
BsrFI RCCGGY 1 cut(s) 1463
BsrI ACTGG 3 cut(s) 355, 446, 1140
BssAI RCCGGY 1 cut(s) 1463
BssECI CCNNGG 1 cut(s) 876
BssMI GATC 4 cut(s) 550, 740, 745, 1111
BssT1I CCWWGG 1 cut(s) 876
Bst2UI CCWGG 1 cut(s) 1503
Bst4CI ACNGT 7 cut(s) 41, 123, 137, 313, 803, 1197, 1396
Bst6I CTCTTC 1 cut(s) 669
BstAPI GCANNNNNTGC 2 cut(s) 1049, 1488
BstBI TTCGAA 1 cut(s) 729
BstC8I GCNNGC 3 cut(s) 540, 1054, 1499
BstDEI CTNAG 4 cut(s) 324, 824, 1083, 1492
BstF5I GGATG 5 cut(s) 162, 211, 217, 489, 1317
BstFNI CGCG 1 cut(s) 716
BstH2I RGCGCY 1 cut(s) 539
BstHHI GCGC 2 cut(s) 538, 1299
BstKTI GATC 4 cut(s) 553, 743, 748, 1114
BstMAI GTCTC 2 cut(s) 671, 896
BstMBI GATC 4 cut(s) 550, 740, 745, 1111
BstMCI CGRYCG 1 cut(s) 1226
BstMWI GCNNNNNNNGC 6 cut(s) 392, 542, 1049, 1160, 1208, 1488
BstNI CCWGG 1 cut(s) 1503
BstNSI RCATGY 1 cut(s) 887
BstPAI GACNNNNGTC 1 cut(s) 1195
BstSCI CCNGG 1 cut(s) 1501
BstUI CGCG 1 cut(s) 716
BstV1I GCAGC 3 cut(s) 554, 952, 1354
BstV2I GAAGAC 1 cut(s) 276
BstX2I RGATCY 2 cut(s) 740, 1111
BstYI RGATCY 2 cut(s) 740, 1111
BstZI CGGCCG 1 cut(s) 1223
BsuI GTATCC 1 cut(s) 111
BsuRI GGCC 3 cut(s) 630, 1225, 1372
BtsCI GGATG 5 cut(s) 162, 211, 217, 489, 1317
BtsI GCAGTG 1 cut(s) 905
BtsIMutI CAGTG 5 cut(s) 309, 321, 439, 808, 905
Cac8I GCNNGC 3 cut(s) 540, 1054, 1499
CfoI GCGC 2 cut(s) 538, 1299
Cfr10I RCCGGY 1 cut(s) 1463
Cfr13I GGNCC 3 cut(s) 447, 628, 1370
CseI GACGC 1 cut(s) 1160
Csp6I GTAC 1 cut(s) 1004
CspAI ACCGGT 1 cut(s) 1463
CviAII CATG 4 cut(s) 48, 127, 884, 1404
CviQI GTAC 1 cut(s) 1004
DdeI CTNAG 4 cut(s) 324, 824, 1083, 1492
DpnI GATC 4 cut(s) 552, 742, 747, 1113
DpnII GATC 4 cut(s) 550, 740, 745, 1111
DriI GACNNNNNGTC 1 cut(s) 313
EaeI YGGCCR 1 cut(s) 1223
EagI CGGCCG 1 cut(s) 1223
Eam1104I CTCTTC 1 cut(s) 669
Eam1105I GACNNNNNGTC 1 cut(s) 313
EarI CTCTTC 1 cut(s) 669
EclXI CGGCCG 1 cut(s) 1223
Eco130I CCWWGG 1 cut(s) 876
Eco47I GGWCC 1 cut(s) 447
Eco47III AGCGCT 1 cut(s) 537
Eco52I CGGCCG 1 cut(s) 1223
Eco57I CTGAAG 3 cut(s) 288, 950, 1077
Eco88I CYCGRG 1 cut(s) 531
EcoO109I RGGNCCY 3 cut(s) 447, 628, 1370
EcoRI GAATTC 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 1501
EcoT14I CCWWGG 1 cut(s) 876
EcoT22I ATGCAT 1 cut(s) 397
ErhI CCWWGG 1 cut(s) 876
FaeI CATG 4 cut(s) 51, 130, 887, 1407
FaqI GGGAC 2 cut(s) 1163, 1203
FatI CATG 4 cut(s) 47, 126, 883, 1403
FauNDI CATATG 1 cut(s) 547
FbaI TGATCA 1 cut(s) 550
Fnu4HI GCNGC 5 cut(s) 543, 966, 1226, 1281, 1343
FokI GGATG 5 cut(s) 169, 218, 224, 496, 1324
Fsp4HI GCNGC 5 cut(s) 543, 966, 1226, 1281, 1343
FspBI CTAG 2 cut(s) 95, 621
GlaI GCGC 2 cut(s) 537, 1298
GluI GCNGC 5 cut(s) 543, 966, 1226, 1281, 1343
GsuI CTGGAG 1 cut(s) 463
HaeII RGCGCY 1 cut(s) 539
HaeIII GGCC 3 cut(s) 630, 1225, 1372
HapII CCGG 2 cut(s) 597, 1464
HgaI GACGC 1 cut(s) 1160
HhaI GCGC 2 cut(s) 538, 1299
Hin1II CATG 4 cut(s) 51, 130, 887, 1407
Hin6I GCGC 2 cut(s) 536, 1297
HinP1I GCGC 2 cut(s) 536, 1297
HincII GTYRAC 2 cut(s) 217, 432
HindII GTYRAC 2 cut(s) 217, 432
HinfI GANTC 7 cut(s) 350, 509, 593, 934, 1238, 1333, 1400
HpaII CCGG 2 cut(s) 597, 1464
HphI GGTGA 3 cut(s) 353, 878, 961
Hpy166II GTNNAC 4 cut(s) 44, 217, 432, 922
Hpy188I TCNGA 5 cut(s) 319, 745, 985, 1096, 1471
Hpy188III TCNNGA 8 cut(s) 154, 169, 531, 749, 860, 901, 1166, 1267
Hpy8I GTNNAC 4 cut(s) 44, 217, 432, 922
HpyAV CCTTC 5 cut(s) 332, 1280, 1349, 1361, 1395
HpyCH4III ACNGT 7 cut(s) 41, 123, 137, 313, 803, 1197, 1396
HpyCH4IV ACGT 2 cut(s) 457, 562
HpyF10VI GCNNNNNNNGC 6 cut(s) 392, 542, 1049, 1160, 1208, 1488
HpyF3I CTNAG 4 cut(s) 324, 824, 1083, 1492
HpySE526I ACGT 2 cut(s) 457, 562
Hsp92II CATG 4 cut(s) 51, 130, 887, 1407
HspAI GCGC 2 cut(s) 536, 1297
Ksp22I TGATCA 1 cut(s) 550
Kzo9I GATC 4 cut(s) 550, 740, 745, 1111
LmnI GCTCC 6 cut(s) 302, 852, 880, 1168, 1453, 1479
Lsp1109I GCAGC 3 cut(s) 554, 952, 1354
LweI GCATC 6 cut(s) 159, 268, 382, 701, 942, 1198
MaeI CTAG 2 cut(s) 95, 621
MaeII ACGT 2 cut(s) 457, 562
MaeIII GTNAC 2 cut(s) 131, 137
MalI GATC 4 cut(s) 552, 742, 747, 1113
MboI GATC 4 cut(s) 550, 740, 745, 1111
MflI RGATCY 2 cut(s) 740, 1111
MluI ACGCGT 1 cut(s) 714
MmeI TCCRAC 1 cut(s) 37
Mph1103I ATGCAT 1 cut(s) 397
MroXI GAANNNNTTC 1 cut(s) 1465
MseI TTAA 2 cut(s) 191, 498
MslI CAYNNNNRTG 1 cut(s) 155
MspI CCGG 2 cut(s) 597, 1464
MspR9I CCNGG 1 cut(s) 1503
Mva1269I GAATGC 2 cut(s) 569, 1043
MvaI CCWGG 1 cut(s) 1503
MvnI CGCG 1 cut(s) 716
MwoI GCNNNNNNNGC 6 cut(s) 392, 542, 1049, 1160, 1208, 1488
NdeI CATATG 1 cut(s) 547
NdeII GATC 4 cut(s) 550, 740, 745, 1111
NlaIII CATG 4 cut(s) 51, 130, 887, 1407
NlaIV GGNNCC 2 cut(s) 6, 1323
NmuCI GTSAC 1 cut(s) 137
NsiI ATGCAT 1 cut(s) 397
NspI RCATGY 1 cut(s) 887
NspV TTCGAA 1 cut(s) 729
PctI GAATGC 2 cut(s) 569, 1043
PdmI GAANNNNTTC 1 cut(s) 1465
PfeI GAWTC 7 cut(s) 350, 509, 593, 934, 1238, 1333, 1400
PinAI ACCGGT 1 cut(s) 1463
PkrI GCNGC 5 cut(s) 544, 967, 1227, 1282, 1344
PpuMI RGGWCCY 1 cut(s) 447
PshAI GACNNNNGTC 1 cut(s) 1195
Psp1406I AACGTT 1 cut(s) 562
Psp5II RGGWCCY 1 cut(s) 447
Psp6I CCWGG 1 cut(s) 1501
PspGI CCWGG 1 cut(s) 1501
PspN4I GGNNCC 2 cut(s) 6, 1323
PspPI GGNCC 3 cut(s) 447, 628, 1370
PspPPI RGGWCCY 1 cut(s) 447
PsuI RGATCY 2 cut(s) 740, 1111
RsaI GTAC 1 cut(s) 1005
RsaNI GTAC 1 cut(s) 1004
RseI CAYNNNNRTG 1 cut(s) 155
SaqAI TTAA 2 cut(s) 191, 498
SatI GCNGC 5 cut(s) 543, 966, 1226, 1281, 1343
Sau3AI GATC 4 cut(s) 550, 740, 745, 1111
Sau96I GGNCC 3 cut(s) 447, 628, 1370
ScrFI CCNGG 1 cut(s) 1503
SfaNI GCATC 6 cut(s) 159, 268, 382, 701, 942, 1198
SfuI TTCGAA 1 cut(s) 729
SinI GGWCC 1 cut(s) 447
SmiMI CAYNNNNRTG 1 cut(s) 155
SmlI CTYRAG 2 cut(s) 253, 851
SmoI CTYRAG 2 cut(s) 253, 851
SsiI CCGC 7 cut(s) 203, 305, 365, 472, 652, 1226, 1280
SspI AATATT 2 cut(s) 290, 1105
SspMI CTAG 2 cut(s) 95, 621
StyD4I CCNGG 1 cut(s) 1501
StyI CCWWGG 1 cut(s) 876
TaaI ACNGT 7 cut(s) 41, 123, 137, 313, 803, 1197, 1396
TaiI ACGT 2 cut(s) 460, 565
TaqI TCGA 6 cut(s) 225, 573, 729, 859, 900, 1391
TauI GCSGC 2 cut(s) 1228, 1283
TfiI GAWTC 7 cut(s) 350, 509, 593, 934, 1238, 1333, 1400
Tru1I TTAA 2 cut(s) 191, 498
Tru9I TTAA 2 cut(s) 191, 498
TscAI CASTG 5 cut(s) 316, 328, 446, 808, 912
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 3 cut(s) 542, 965, 1342
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 2 cut(s) 173, 1377
TspRI CASTG 5 cut(s) 316, 328, 446, 808, 912
VpaK11BI GGWCC 1 cut(s) 447
XapI RAATTY 5 cut(s) 88, 328, 773, 988, 1423
XceI RCATGY 1 cut(s) 887
XmnI GAANNNNTTC 1 cut(s) 1465
XspI CTAG 2 cut(s) 95, 621
Zsp2I ATGCAT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.