Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023501.1

Orthogroup ID

OG0009839

Physical Location & Seq

Genomic Coordinates Forward (+)

18503 .. 23259

Gene Structure 4757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023501.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

atggcacctgcccaaccatttacagacattgaccaggactgtaaaccatgtgtaaatgcaaaagttgaactacatacagagaacaggaattccctagaaaactcatctttggaggacataccgtgcatgagtaaccgtgacgacaactgcatcaggatgaaatctgtcctgaatggaacagatgaggctttaatgtgcattgcggatgtggatgttgacataatcgaatgtggaaataatcataaccacagcatgaaggctgaaactgaagaccctgatgcaactgaatattcaagctcctttgcagacactgtgtctgacactgagaattttagtgaaggtgaagtggaatcccagtcctttccgcagaatggtttgacatctgcttttgatgcatttagtagtgcatttcaaatgaggaagaagaagttgacaaatcactggaggacctttatacgtcctgtgatgtggcggtgcaaatggatggaattgagaattaaagaaattgaatcacaagaattgaattattcccgagcgcttgcagcatatgatcaaagaaaacgttcagcatttgaccaatctatattagaagaatctggttcaaagtcattgccattttctagtcagggactacgaaaaaaatctatcaagcggaggaaacgcaagagaattgaagagacaactgatattgcgtcgtatatatcacatcataacgcgttttcctattttgaaaacaagagatccgatcctgatagcacatctctggctgacgaatttagtaatgcagagttcaatattggggatctggtaatgcctgaaagtgtagtttccagtttcggggaggctatccctgcttctgatataatagaaagctctgtgggactattgtctgctactgatgccatcttccatcagccgcagtttagcgaatcaagtgaagatattgtggataatgtcttgatacataatgcggcagaaggagagaagcgcactttccaaaggatgagtgacgaacccaaagagaatcatcagcagcaagcagaggaaggcaaacaagaaggtccttgggcaactctttcatcaactgttgaatcatgtttaggattagatgtaaattttccaagaaacaagagaaaaagaggggagcgaagaactggttcagatgtttggagcaagaaatgctcaggcgagcctggtagccaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

401

Amino Acids

45.18

Weight (kDa)

4.99

Isoelectric Point (pI)

62.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59670
fragaria_vesca	FvH4_5g30050
malus_domestica	MD04G1049200.v1.1 MD17G1177900.v1.1
prunus_persica	Prupe.1G207400_v2.0.a1 Prupe.1G207400_v2.0.a1
pyrus_communis	pycom04g04340 pycom17g18680 pycom17g18690
rosa_chinensis	RchiOBHm_Chr7g0224241
rosa_laevigata	RLG00000001911
rosa_multiflora	Rmu_sc0008008.1_g000002 Rmu_sc0023501.1_g000004
rosa_roxburghii	Rroxscaffold_3G00235030
rosa_rugosa	Rorug07G0221600
rosa_samantha	Rh7AG366500 Rh7BG330000 Rh7BG357500 Rh7CG384800 Rh7DG360400
rosa_wichuraiana	Rw7G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	16
Acc36I	ACCTGC	1 cut(s)	16
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	716
AciI	CCGC	6 cut(s)	203, 365, 472, 652, 917, 971
AclI	AACGTT	1 cut(s)	562
AclWI	GGATC	3 cut(s)	735, 740, 810
AcsI	RAATTY	4 cut(s)	88, 328, 773, 1114
AcuI	CTGAAG	1 cut(s)	288
AfeI	AGCGCT	1 cut(s)	537
AfiI	CCNNNNNNNGG	2 cut(s)	371, 837
AflIII	ACRYGT	1 cut(s)	714
AhdI	GACNNNNNGTC	1 cut(s)	313
AjnI	CCWGG	2 cut(s)	33, 1192
AloI	GAACNNNNNNTCC	2 cut(s)	74, 106
AluBI	AGCT	2 cut(s)	297, 873
AluI	AGCT	2 cut(s)	297, 873
Alw26I	GTCTC	1 cut(s)	671
AlwI	GGATC	3 cut(s)	735, 740, 810
AlwNI	CAGNNNCTG	1 cut(s)	311
Ama87I	CYCGRG	1 cut(s)	531
Aor51HI	AGCGCT	1 cut(s)	537
ApeKI	GCWGC	2 cut(s)	542, 1033
ApoI	RAATTY	4 cut(s)	88, 328, 773, 1114
Asp700I	GAANNNNTTC	2 cut(s)	562, 1156
AspLEI	GCGC	2 cut(s)	538, 990
AspS9I	GGNCC	2 cut(s)	447, 1061
AsuHPI	GGTGA	1 cut(s)	353
AvaI	CYCGRG	1 cut(s)	531
AvaII	GGWCC	2 cut(s)	447, 1061
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	554, 1045
BccI	CCATC	3 cut(s)	478, 911, 918
BciT130I	CCWGG	2 cut(s)	35, 1194
BclI	TGATCA	1 cut(s)	550
BcoDI	GTCTC	1 cut(s)	671
BfaI	CTAG	2 cut(s)	95, 621
BfoI	RGCGCY	1 cut(s)	539
BfuAI	ACCTGC	1 cut(s)	16
BisI	GCNGC	4 cut(s)	543, 917, 972, 1034
BlsI	GCNGC	4 cut(s)	544, 918, 973, 1035
Bme1390I	CCNGG	2 cut(s)	35, 1194
Bme18I	GGWCC	2 cut(s)	447, 1061
BmeRI	GACNNNNNGTC	1 cut(s)	313
BmeT110I	CYCGRG	1 cut(s)	531
BmgT120I	GGNCC	2 cut(s)	447, 1061
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	35, 1194
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	4 cut(s)	159, 268, 382, 889
BmuI	ACTGGG	1 cut(s)	349
BoxI	GACNNNNGTC	1 cut(s)	886
BpiI	GAAGAC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	463
Bpu10I	CCTNAGC	1 cut(s)	1183
BsaJI	CCNNGG	1 cut(s)	1064
Bsc4I	CCNNNNNNNGG	2 cut(s)	371, 837
Bse1I	ACTGG	4 cut(s)	355, 446, 831, 1159
Bse3DI	GCAATG	2 cut(s)	198, 608
BseBI	CCWGG	2 cut(s)	35, 1194
BseDI	CCNNGG	1 cut(s)	1064
BseGI	GGATG	5 cut(s)	162, 211, 217, 489, 1008
BseLI	CCNNNNNNNGG	2 cut(s)	371, 837
BseMI	GCAATG	2 cut(s)	198, 608
BseMII	CTCAG	2 cut(s)	315, 1197
BseNI	ACTGG	4 cut(s)	355, 446, 831, 1159
BseXI	GCAGC	2 cut(s)	554, 1045
Bsh1236I	CGCG	1 cut(s)	716
BshNI	GGYRCC	1 cut(s)	4
BsiHKCI	CYCGRG	1 cut(s)	531
BslFI	GGGAC	2 cut(s)	642, 894
BslI	CCNNNNNNNGG	2 cut(s)	371, 837
BsmAI	GTCTC	1 cut(s)	671
BsmFI	GGGAC	2 cut(s)	642, 894
BsoBI	CYCGRG	1 cut(s)	531
Bsp143I	GATC	4 cut(s)	550, 740, 745, 802
BspACI	CCGC	6 cut(s)	203, 365, 472, 652, 917, 971
BspCNI	CTCAG	2 cut(s)	316, 1196
BspFNI	CGCG	1 cut(s)	716
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	16
BspPI	GGATC	3 cut(s)	735, 740, 810
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	2 cut(s)	198, 608
BsrI	ACTGG	4 cut(s)	355, 446, 831, 1159
BssECI	CCNNGG	1 cut(s)	1064
BssMI	GATC	4 cut(s)	550, 740, 745, 802
BssT1I	CCWWGG	1 cut(s)	1064
Bst2UI	CCWGG	2 cut(s)	35, 1194
Bst4CI	ACNGT	5 cut(s)	41, 123, 137, 313, 1087
Bst6I	CTCTTC	1 cut(s)	669
BstAPI	GCANNNNNTGC	1 cut(s)	1179
BstC8I	GCNNGC	3 cut(s)	540, 1038, 1190
BstDEI	CTNAG	2 cut(s)	324, 1183
BstF5I	GGATG	5 cut(s)	162, 211, 217, 489, 1008
BstFNI	CGCG	1 cut(s)	716
BstH2I	RGCGCY	1 cut(s)	539
BstHHI	GCGC	2 cut(s)	538, 990
BstKTI	GATC	4 cut(s)	553, 743, 748, 805
BstMAI	GTCTC	1 cut(s)	671
BstMBI	GATC	4 cut(s)	550, 740, 745, 802
BstMWI	GCNNNNNNNGC	5 cut(s)	392, 542, 851, 899, 1179
BstNI	CCWGG	2 cut(s)	35, 1194
BstPAI	GACNNNNGTC	1 cut(s)	886
BstSCI	CCNGG	2 cut(s)	33, 1192
BstUI	CGCG	1 cut(s)	716
BstV1I	GCAGC	2 cut(s)	554, 1045
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	2 cut(s)	740, 802
BstYI	RGATCY	2 cut(s)	740, 802
BtsCI	GGATG	5 cut(s)	162, 211, 217, 489, 1008
BtsIMutI	CAGTG	3 cut(s)	309, 321, 439
BveI	ACCTGC	1 cut(s)	16
Cac8I	GCNNGC	3 cut(s)	540, 1038, 1190
CaiI	CAGNNNCTG	1 cut(s)	311
CfoI	GCGC	2 cut(s)	538, 990
Cfr13I	GGNCC	2 cut(s)	447, 1061
CseI	GACGC	1 cut(s)	681
CviAII	CATG	4 cut(s)	48, 127, 253, 1095
CviJI	RGCY	9 cut(s)	188, 260, 297, 767, 845, 873, 916, 1192, 1200
CviKI_1	RGCY	9 cut(s)	188, 260, 297, 767, 845, 873, 916, 1192, 1200
DdeI	CTNAG	2 cut(s)	324, 1183
DpnI	GATC	4 cut(s)	552, 742, 747, 804
DpnII	GATC	4 cut(s)	550, 740, 745, 802
DriI	GACNNNNNGTC	1 cut(s)	313
Eam1104I	CTCTTC	1 cut(s)	669
Eam1105I	GACNNNNNGTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	669
Eco130I	CCWWGG	1 cut(s)	1064
Eco47I	GGWCC	2 cut(s)	447, 1061
Eco47III	AGCGCT	1 cut(s)	537
Eco57I	CTGAAG	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	531
EcoO109I	RGGNCCY	2 cut(s)	447, 1061
EcoRI	GAATTC	1 cut(s)	88
EcoRII	CCWGG	2 cut(s)	33, 1192
EcoT14I	CCWWGG	1 cut(s)	1064
EcoT22I	ATGCAT	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	1064
FaeI	CATG	4 cut(s)	51, 130, 256, 1098
FaqI	GGGAC	2 cut(s)	642, 894
FatI	CATG	4 cut(s)	47, 126, 252, 1094
FauNDI	CATATG	1 cut(s)	547
FbaI	TGATCA	1 cut(s)	550
Fnu4HI	GCNGC	4 cut(s)	543, 917, 972, 1034
FokI	GGATG	5 cut(s)	169, 218, 224, 496, 1015
Fsp4HI	GCNGC	4 cut(s)	543, 917, 972, 1034
FspBI	CTAG	2 cut(s)	95, 621
GlaI	GCGC	2 cut(s)	537, 989
GluI	GCNGC	4 cut(s)	543, 917, 972, 1034
GsuI	CTGGAG	1 cut(s)	463
HaeII	RGCGCY	1 cut(s)	539
HgaI	GACGC	1 cut(s)	681
HhaI	GCGC	2 cut(s)	538, 990
Hin1II	CATG	4 cut(s)	51, 130, 256, 1098
Hin6I	GCGC	2 cut(s)	536, 988
HinP1I	GCGC	2 cut(s)	536, 988
HincII	GTYRAC	2 cut(s)	217, 432
HindII	GTYRAC	2 cut(s)	217, 432
HinfI	GANTC	6 cut(s)	350, 509, 593, 929, 1024, 1091
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	3 cut(s)	44, 217, 432
Hpy188I	TCNGA	4 cut(s)	319, 745, 859, 1162
Hpy188III	TCNNGA	5 cut(s)	154, 169, 531, 749, 958
Hpy8I	GTNNAC	3 cut(s)	44, 217, 432
Hpy99I	CGWCG	1 cut(s)	697
HpyAV	CCTTC	5 cut(s)	250, 332, 971, 1040, 1052
HpyCH4III	ACNGT	5 cut(s)	41, 123, 137, 313, 1087
HpyCH4IV	ACGT	2 cut(s)	457, 562
HpyF10VI	GCNNNNNNNGC	5 cut(s)	392, 542, 851, 899, 1179
HpyF3I	CTNAG	2 cut(s)	324, 1183
HpySE526I	ACGT	2 cut(s)	457, 562
Hsp92II	CATG	4 cut(s)	51, 130, 256, 1098
HspAI	GCGC	2 cut(s)	536, 988
Ksp22I	TGATCA	1 cut(s)	550
Kzo9I	GATC	4 cut(s)	550, 740, 745, 802
LmnI	GCTCC	3 cut(s)	302, 1144, 1170
Lsp1109I	GCAGC	2 cut(s)	554, 1045
LweI	GCATC	4 cut(s)	159, 268, 382, 889
MaeI	CTAG	2 cut(s)	95, 621
MaeII	ACGT	2 cut(s)	457, 562
MaeIII	GTNAC	3 cut(s)	131, 137, 1007
MalI	GATC	4 cut(s)	552, 742, 747, 804
MboI	GATC	4 cut(s)	550, 740, 745, 802
MboII	GAAGA	8 cut(s)	281, 433, 436, 602, 686, 898, 950, 1161
MflI	RGATCY	2 cut(s)	740, 802
MluI	ACGCGT	1 cut(s)	714
MnlI	CCTC	8 cut(s)	106, 178, 411, 438, 648, 835, 1036, 1133
Mph1103I	ATGCAT	1 cut(s)	397
MroXI	GAANNNNTTC	2 cut(s)	562, 1156
MseI	TTAA	2 cut(s)	191, 498
MslI	CAYNNNNRTG	1 cut(s)	155
MspR9I	CCNGG	2 cut(s)	35, 1194
MvaI	CCWGG	2 cut(s)	35, 1194
MvnI	CGCG	1 cut(s)	716
MwoI	GCNNNNNNNGC	5 cut(s)	392, 542, 851, 899, 1179
NdeI	CATATG	1 cut(s)	547
NdeII	GATC	4 cut(s)	550, 740, 745, 802
NlaIII	CATG	4 cut(s)	51, 130, 256, 1098
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	137, 1007
NsiI	ATGCAT	1 cut(s)	397
PaqCI	CACCTGC	1 cut(s)	16
PdmI	GAANNNNTTC	2 cut(s)	562, 1156
PfeI	GAWTC	6 cut(s)	350, 509, 593, 929, 1024, 1091
PkrI	GCNGC	4 cut(s)	544, 918, 973, 1035
PpuMI	RGGWCCY	2 cut(s)	447, 1061
PshAI	GACNNNNGTC	1 cut(s)	886
Psp1406I	AACGTT	1 cut(s)	562
Psp5II	RGGWCCY	2 cut(s)	447, 1061
Psp6I	CCWGG	2 cut(s)	33, 1192
PspGI	CCWGG	2 cut(s)	33, 1192
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	447, 1061
PspPPI	RGGWCCY	2 cut(s)	447, 1061
PstNI	CAGNNNCTG	1 cut(s)	311
PsuI	RGATCY	2 cut(s)	740, 802
RseI	CAYNNNNRTG	1 cut(s)	155
SaqAI	TTAA	2 cut(s)	191, 498
SatI	GCNGC	4 cut(s)	543, 917, 972, 1034
Sau3AI	GATC	4 cut(s)	550, 740, 745, 802
Sau96I	GGNCC	2 cut(s)	447, 1061
ScrFI	CCNGG	2 cut(s)	35, 1194
SetI	ASST	8 cut(s)	10, 299, 343, 452, 460, 565, 875, 1063
SfaNI	GCATC	4 cut(s)	159, 268, 382, 889
SinI	GGWCC	2 cut(s)	447, 1061
SmiMI	CAYNNNNRTG	1 cut(s)	155
SsiI	CCGC	6 cut(s)	203, 365, 472, 652, 917, 971
SspI	AATATT	2 cut(s)	290, 796
SspMI	CTAG	2 cut(s)	95, 621
StyD4I	CCNGG	2 cut(s)	33, 1192
StyI	CCWWGG	1 cut(s)	1064
TaaI	ACNGT	5 cut(s)	41, 123, 137, 313, 1087
TaiI	ACGT	2 cut(s)	460, 565
TaqI	TCGA	1 cut(s)	225
TauI	GCSGC	2 cut(s)	919, 974
TfiI	GAWTC	6 cut(s)	350, 509, 593, 929, 1024, 1091
Tru1I	TTAA	2 cut(s)	191, 498
Tru9I	TTAA	2 cut(s)	191, 498
TscAI	CASTG	3 cut(s)	316, 328, 446
TseFI	GTSAC	2 cut(s)	137, 1007
TseI	GCWGC	2 cut(s)	542, 1033
Tsp45I	GTSAC	2 cut(s)	137, 1007
TspDTI	ATGAA	3 cut(s)	173, 269, 1068
TspRI	CASTG	3 cut(s)	316, 328, 446
VpaK11BI	GGWCC	2 cut(s)	447, 1061
XapI	RAATTY	4 cut(s)	88, 328, 773, 1114
XmnI	GAANNNNTTC	2 cut(s)	562, 1156
XspI	CTAG	2 cut(s)	95, 621
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.