Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0009839

Physical Location & Seq

Genomic Coordinates Forward (+)

20326361 .. 20329750

Gene Structure 3390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1177900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGGCTCCTGCCCAACCATTCATGGAGGCTGACCAAGACTGTAAACCATTTGTCAACCCAAAAGTTGAACTTCTTGATGATGATACAGAAATCAGGAGGGCTTCCTTGCCAAACTCTGCTTCTGCTTCGGCATCGGAGGGAAAACACATGGCTTCAATCTTCGACATTGATATAATTCAGTGCACAAGTAATCAGGAGCAGCCTGAAACTGACCATCCTGATGCTGATGCAACTGATGAATATTCAACCTCATTTGCCGACACTACGTCTGACACTGGTAGTTTTTCTGGATTTTGTGAAGAAGGTGAAGTGCAGTCCCATTCGTTTGAGGACAGTACTTTGACATCTGCTTTTGATGCATTTGCGAGGGCATTTCAAAGCAGGAAGAAGAAGTTGACAAATCACTGGAGAAACTTTATACGTCCAGTAATGTGGCGCTGCAATTGGATGGAATTGAGAATTAAGGAAATTGAAGAACAAGCACTAAAGTATTCCAGAGACCTAGGAGTAGCATATGGTAAAAAAAGACATACAGGACTCGACCAATTTCCTTTGGAAGAATTTGGTTCAAAGTCATTGCCATTTTGTAGTCAATTCTGCAGAAAGAAAGCTATGAAGAGGAGGAAACGCAAAAGAGTTGAAGACACAACTGATATAGCATCATATATCTCAAATCATAATGTCTTTTCCTATCTTGAAAATAAAAGATCCGATCATGATGGCACTTCCTTTGCTGATGACTTTAGTAATGCCGTAATCGCAGAGCAGAGTGCGGATTACAACGATAAACTCAGCAGTGGTGATAACTGGGCATTCTTTGAGTACCGAGATGGTGACAAGCCTTTGGAGCATGTCCTTTGGAAAACCAGCTCTGCACATAGTCCAGCATTGTCTCCTGGCACTGGAGACACAATCTCTGCGGGAGCTATATATACTCCAGCTCAACATGTCTCAAGTTTTGTGGAGGGAATCACTGTTCCTGATATAATTGAAAGCACTGTGGGACTACCATCTGCTGTTGACGTTACCTTCCATCAGCCGCAGTTTGGAGACTCAAGCGAAGATATTGTGGATAATGTCCCGATACATAGCGAGGTGGCTGAAGCAGAGAAGCACACTTTCCAAATGATCAACGACCAACCTAAAGAGGAACATGAGCAACCAGAGAAAGACATACAAGAAGCCGTTTTTCCAACTCCACAATCAGACCCTGCTCCCTCGGCAGAAGCTGCTCTTCCTCAGGAGCAATCGACTCTAGAGTCATGCTTGGCTTCAGATGTAAGTTTTCATAGAAACAAGAGAAAGCGAGGGGAGCGAAAAGCAGGTTCGGTTGTTTGGAGCAAGAAATGCTCGGGCAAGCCTGATAGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

458

Amino Acids

51.06

Weight (kDa)

4.99

Isoelectric Point (pI)

51.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59670
fragaria_vesca	FvH4_5g30050
malus_domestica	MD04G1049200.v1.1 MD17G1177900.v1.1
prunus_persica	Prupe.1G207400_v2.0.a1 Prupe.1G207400_v2.0.a1
pyrus_communis	pycom04g04340 pycom17g18680 pycom17g18690
rosa_chinensis	RchiOBHm_Chr7g0224241
rosa_laevigata	RLG00000001911
rosa_multiflora	Rmu_sc0008008.1_g000002 Rmu_sc0023501.1_g000004
rosa_roxburghii	Rroxscaffold_3G00235030
rosa_rugosa	Rorug07G0221600
rosa_samantha	Rh7AG366500 Rh7BG330000 Rh7BG357500 Rh7CG384800 Rh7DG360400
rosa_wichuraiana	Rw7G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1258
Acc36I	ACCTGC	1 cut(s)	1313
AciI	CCGC	3 cut(s)	773, 920, 1040
AclWI	GGATC	1 cut(s)	702
AcsI	RAATTY	1 cut(s)	560
AcuI	CTGAAG	2 cut(s)	1122, 1257
AfaI	GTAC	2 cut(s)	337, 824
AfiI	CCNNNNNNNGG	2 cut(s)	902, 1046
AflIII	ACRYGT	1 cut(s)	946
AgsI	TTSAA	9 cut(s)	68, 156, 246, 377, 473, 570, 641, 698, 992
AhdI	GACNNNNNGTC	1 cut(s)	265
AjnI	CCWGG	1 cut(s)	895
AjuI	GAANNNNNNNTTGG	2 cut(s)	103, 135
AloI	GAACNNNNNNTCC	2 cut(s)	960, 992
AluBI	AGCT	5 cut(s)	611, 870, 926, 941, 1229
AluI	AGCT	5 cut(s)	611, 870, 926, 941, 1229
Alw21I	GWGCWC	1 cut(s)	185
Alw26I	GTCTC	5 cut(s)	492, 897, 900, 955, 1044
Alw44I	GTGCAC	1 cut(s)	181
AlwI	GGATC	1 cut(s)	702
AlwNI	CAGNNNCTG	2 cut(s)	1211, 1229
Ama87I	CYCGRG	1 cut(s)	1351
ApaLI	GTGCAC	1 cut(s)	181
ApeKI	GCWGC	3 cut(s)	199, 438, 1229
ApoI	RAATTY	1 cut(s)	560
AspA2I	CCTAGG	1 cut(s)	502
AspLEI	GCGC	1 cut(s)	438
AsuHPI	GGTGA	3 cut(s)	317, 812, 845
AvaI	CYCGRG	1 cut(s)	1351
AvrII	CCTAGG	1 cut(s)	502
AxyI	CCTNAGG	1 cut(s)	1239
BaeGI	GKGCMC	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	648
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	3 cut(s)	211, 425, 1216
BccI	CCATC	6 cut(s)	222, 442, 713, 824, 1018, 1041
BceAI	ACGGC	2 cut(s)	737, 1169
BciT130I	CCWGG	1 cut(s)	897
BclI	TGATCA	1 cut(s)	1128
BcoDI	GTCTC	5 cut(s)	492, 897, 900, 955, 1044
BfaI	CTAG	2 cut(s)	503, 1256
BfmI	CTRYAG	1 cut(s)	598
BfoI	RGCGCY	1 cut(s)	439
BfuAI	ACCTGC	1 cut(s)	1313
BisI	GCNGC	4 cut(s)	200, 439, 1040, 1230
BlnI	CCTAGG	1 cut(s)	502
BlsI	GCNGC	4 cut(s)	201, 440, 1041, 1231
BmcAI	AGTACT	1 cut(s)	337
Bme1390I	CCNGG	1 cut(s)	897
BmeRI	GACNNNNNGTC	1 cut(s)	265
BmeT110I	CYCGRG	1 cut(s)	1351
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	897
BmrI	ACTGGG	1 cut(s)	817
BmsI	GCATC	5 cut(s)	140, 211, 217, 346, 668
BmuI	ACTGGG	1 cut(s)	817
BpiI	GAAGAC	1 cut(s)	648
BpmI	CTGGAG	3 cut(s)	427, 921, 924
BpuEI	CTTGAG	2 cut(s)	937, 1039
BsaI	GGTCTC	1 cut(s)	492
BsaJI	CCNNGG	2 cut(s)	502, 1218
Bsc4I	CCNNNNNNNGG	2 cut(s)	902, 1046
Bse1I	ACTGG	6 cut(s)	280, 410, 425, 812, 907, 1369
Bse21I	CCTNAGG	1 cut(s)	1239
Bse3DI	GCAATG	1 cut(s)	575
BseBI	CCWGG	1 cut(s)	897
BseDI	CCNNGG	2 cut(s)	502, 1218
BseGI	GGATG	2 cut(s)	214, 453
BseLI	CCNNNNNNNGG	2 cut(s)	902, 1046
BseMI	GCAATG	1 cut(s)	575
BseMII	CTCAG	2 cut(s)	805, 1253
BseNI	ACTGG	6 cut(s)	280, 410, 425, 812, 907, 1369
BseRI	GAGGAG	1 cut(s)	634
BseSI	GKGCMC	1 cut(s)	185
BseXI	GCAGC	3 cut(s)	211, 425, 1216
BsgI	GTGCAG	2 cut(s)	332, 858
BsiHKAI	GWGCWC	1 cut(s)	185
BsiHKCI	CYCGRG	1 cut(s)	1351
BslFI	GGGAC	3 cut(s)	301, 1017, 1064
BslI	CCNNNNNNNGG	2 cut(s)	902, 1046
BsmAI	GTCTC	5 cut(s)	492, 897, 900, 955, 1044
BsmFI	GGGAC	3 cut(s)	301, 1017, 1064
BsmI	GAATGC	1 cut(s)	812
Bso31I	GGTCTC	1 cut(s)	492
BsoBI	CYCGRG	1 cut(s)	1351
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	3 cut(s)	707, 712, 1128
BspACI	CCGC	3 cut(s)	773, 920, 1040
BspCNI	CTCAG	2 cut(s)	804, 1252
BspHI	TCATGA	1 cut(s)	715
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	602
BspMI	ACCTGC	1 cut(s)	1313
BspPI	GGATC	1 cut(s)	702
BspQI	GCTCTTC	1 cut(s)	1239
BspTNI	GGTCTC	1 cut(s)	492
BsrDI	GCAATG	1 cut(s)	575
BsrI	ACTGG	6 cut(s)	280, 410, 425, 812, 907, 1369
BssECI	CCNNGG	2 cut(s)	502, 1218
BssMI	GATC	3 cut(s)	707, 712, 1128
BssT1I	CCWWGG	1 cut(s)	502
Bst2UI	CCWGG	1 cut(s)	897
Bst4CI	ACNGT	4 cut(s)	41, 335, 976, 1000
Bst6I	CTCTTC	2 cut(s)	611, 1239
BstAPI	GCANNNNNTGC	2 cut(s)	1229, 1347
BstC8I	GCNNGC	1 cut(s)	1358
BstDEI	CTNAG	2 cut(s)	791, 1239
BstF5I	GGATG	2 cut(s)	214, 453
BstH2I	RGCGCY	1 cut(s)	439
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	3 cut(s)	710, 715, 1131
BstMAI	GTCTC	5 cut(s)	492, 897, 900, 955, 1044
BstMBI	GATC	3 cut(s)	707, 712, 1128
BstMWI	GCNNNNNNNGC	7 cut(s)	356, 758, 847, 1220, 1229, 1312, 1347
BstNI	CCWGG	1 cut(s)	897
BstNSI	RCATGY	2 cut(s)	854, 950
BstSCI	CCNGG	1 cut(s)	895
BstSFI	CTRYAG	1 cut(s)	598
BstSLI	GKGCMC	1 cut(s)	185
BstV1I	GCAGC	3 cut(s)	211, 425, 1216
BstV2I	GAAGAC	1 cut(s)	648
BstX2I	RGATCY	1 cut(s)	707
BstXI	CCANNNNNNTGG	1 cut(s)	432
BstYI	RGATCY	1 cut(s)	707
Bsu36I	CCTNAGG	1 cut(s)	1239
BtsCI	GGATG	2 cut(s)	214, 453
BtsI	GCAGTG	1 cut(s)	802
BtsIMutI	CAGTG	7 cut(s)	185, 273, 403, 802, 900, 972, 996
BveI	ACCTGC	1 cut(s)	1313
Cac8I	GCNNGC	1 cut(s)	1358
CaiI	CAGNNNCTG	2 cut(s)	1211, 1229
CciI	TCATGA	1 cut(s)	715
CfoI	GCGC	1 cut(s)	438
Csp6I	GTAC	2 cut(s)	336, 823
CspCI	CAANNNNNGTGG	2 cut(s)	942, 977
CviAII	CATG	7 cut(s)	22, 148, 716, 851, 947, 1154, 1263
CviQI	GTAC	2 cut(s)	336, 823
DdeI	CTNAG	2 cut(s)	791, 1239
DpnI	GATC	3 cut(s)	709, 714, 1130
DpnII	GATC	3 cut(s)	707, 712, 1128
DrdI	GACNNNNNNGTC	1 cut(s)	1258
DriI	GACNNNNNGTC	1 cut(s)	265
DseDI	GACNNNNNNGTC	1 cut(s)	1258
Eam1104I	CTCTTC	2 cut(s)	611, 1239
Eam1105I	GACNNNNNGTC	1 cut(s)	265
EarI	CTCTTC	2 cut(s)	611, 1239
Eco130I	CCWWGG	1 cut(s)	502
Eco31I	GGTCTC	1 cut(s)	492
Eco57I	CTGAAG	2 cut(s)	1122, 1257
Eco81I	CCTNAGG	1 cut(s)	1239
Eco88I	CYCGRG	1 cut(s)	1351
EcoRII	CCWGG	1 cut(s)	895
EcoT14I	CCWWGG	1 cut(s)	502
EcoT22I	ATGCAT	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	502
FaeI	CATG	7 cut(s)	25, 151, 719, 854, 950, 1157, 1266
FalI	AAGNNNNNCTT	4 cut(s)	54, 86, 1218, 1250
FaqI	GGGAC	3 cut(s)	301, 1017, 1064
FatI	CATG	7 cut(s)	21, 147, 715, 850, 946, 1153, 1262
FauI	CCCGC	1 cut(s)	913
FauNDI	CATATG	1 cut(s)	514
FbaI	TGATCA	1 cut(s)	1128
Fnu4HI	GCNGC	4 cut(s)	200, 439, 1040, 1230
FokI	GGATG	2 cut(s)	201, 460
Fsp4HI	GCNGC	4 cut(s)	200, 439, 1040, 1230
FspBI	CTAG	2 cut(s)	503, 1256
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	4 cut(s)	200, 439, 1040, 1230
GsuI	CTGGAG	3 cut(s)	427, 921, 924
HaeII	RGCGCY	1 cut(s)	439
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	7 cut(s)	25, 151, 719, 854, 950, 1157, 1266
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HincII	GTYRAC	3 cut(s)	55, 396, 1021
HindII	GTYRAC	3 cut(s)	55, 396, 1021
HinfI	GANTC	5 cut(s)	537, 969, 1052, 1252, 1259
HphI	GGTGA	3 cut(s)	317, 812, 845
Hpy166II	GTNNAC	5 cut(s)	44, 55, 183, 396, 1021
Hpy188I	TCNGA	5 cut(s)	136, 271, 712, 1207, 1276
Hpy8I	GTNNAC	5 cut(s)	44, 55, 183, 396, 1021
HpyAV	CCTTC	2 cut(s)	296, 1039
HpyCH4III	ACNGT	4 cut(s)	41, 335, 976, 1000
HpyCH4IV	ACGT	3 cut(s)	266, 421, 1023
HpyCH4V	TGCA	7 cut(s)	183, 230, 313, 359, 441, 600, 875
HpyF10VI	GCNNNNNNNGC	7 cut(s)	356, 758, 847, 1220, 1229, 1312, 1347
HpyF3I	CTNAG	2 cut(s)	791, 1239
HpySE526I	ACGT	3 cut(s)	266, 421, 1023
Hsp92II	CATG	7 cut(s)	25, 151, 719, 854, 950, 1157, 1266
HspAI	GCGC	1 cut(s)	436
Ksp22I	TGATCA	1 cut(s)	1128
Kzo9I	GATC	3 cut(s)	707, 712, 1128
LguI	GCTCTTC	1 cut(s)	1239
LmnI	GCTCC	8 cut(s)	10, 196, 847, 923, 1219, 1243, 1312, 1338
Lsp1109I	GCAGC	3 cut(s)	211, 425, 1216
LweI	GCATC	5 cut(s)	140, 211, 217, 346, 668
MaeI	CTAG	2 cut(s)	503, 1256
MaeII	ACGT	3 cut(s)	266, 421, 1023
MaeIII	GTNAC	2 cut(s)	833, 1024
MalI	GATC	3 cut(s)	709, 714, 1130
MboI	GATC	3 cut(s)	707, 712, 1128
MfeI	CAATTG	1 cut(s)	442
MflI	RGATCY	1 cut(s)	707
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	9 cut(s)	174, 442, 452, 459, 468, 545, 560, 593, 987
MlyI	GAGTC	4 cut(s)	531, 1046, 1246, 1268
MmeI	TCCRAC	1 cut(s)	1217
Mph1103I	ATGCAT	1 cut(s)	361
MseI	TTAA	1 cut(s)	462
MslI	CAYNNNNRTG	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	897
MunI	CAATTG	1 cut(s)	442
Mva1269I	GAATGC	1 cut(s)	812
MvaI	CCWGG	1 cut(s)	897
MwoI	GCNNNNNNNGC	7 cut(s)	356, 758, 847, 1220, 1229, 1312, 1347
NdeI	CATATG	1 cut(s)	514
NdeII	GATC	3 cut(s)	707, 712, 1128
NlaIII	CATG	7 cut(s)	25, 151, 719, 854, 950, 1157, 1266
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	1199
NmuCI	GTSAC	1 cut(s)	833
NsiI	ATGCAT	1 cut(s)	361
NspI	RCATGY	2 cut(s)	854, 950
PagI	TCATGA	1 cut(s)	715
PciI	ACATGT	1 cut(s)	946
PciSI	GCTCTTC	1 cut(s)	1239
PctI	GAATGC	1 cut(s)	812
PfeI	GAWTC	1 cut(s)	969
PkrI	GCNGC	4 cut(s)	201, 440, 1041, 1231
PleI	GAGTC	4 cut(s)	531, 1046, 1246, 1267
PpsI	GAGTC	4 cut(s)	531, 1046, 1246, 1267
PscI	ACATGT	1 cut(s)	946
Psp6I	CCWGG	1 cut(s)	895
PspGI	CCWGG	1 cut(s)	895
PspN4I	GGNNCC	1 cut(s)	6
PstI	CTGCAG	1 cut(s)	602
PstNI	CAGNNNCTG	2 cut(s)	1211, 1229
PsuI	RGATCY	1 cut(s)	707
RsaI	GTAC	2 cut(s)	337, 824
RsaNI	GTAC	2 cut(s)	336, 823
RseI	CAYNNNNRTG	1 cut(s)	219
SapI	GCTCTTC	1 cut(s)	1239
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	4 cut(s)	200, 439, 1040, 1230
Sau3AI	GATC	3 cut(s)	707, 712, 1128
ScaI	AGTACT	1 cut(s)	337
SchI	GAGTC	4 cut(s)	531, 1046, 1246, 1268
ScrFI	CCNGG	1 cut(s)	897
SduI	GDGCHC	1 cut(s)	185
SfaNI	GCATC	5 cut(s)	140, 211, 217, 346, 668
SfcI	CTRYAG	1 cut(s)	598
SmiMI	CAYNNNNRTG	1 cut(s)	219
SmlI	CTYRAG	2 cut(s)	952, 1054
SmoI	CTYRAG	2 cut(s)	952, 1054
Sse9I	AATT	9 cut(s)	174, 442, 452, 459, 468, 545, 560, 593, 987
SsiI	CCGC	3 cut(s)	773, 920, 1040
SspI	AATATT	1 cut(s)	242
SspMI	CTAG	2 cut(s)	503, 1256
StyD4I	CCNGG	1 cut(s)	895
StyI	CCWWGG	1 cut(s)	502
TaaI	ACNGT	4 cut(s)	41, 335, 976, 1000
TaiI	ACGT	3 cut(s)	269, 424, 1026
TaqI	TCGA	3 cut(s)	162, 540, 1250
TasI	AATT	9 cut(s)	174, 442, 452, 459, 468, 545, 560, 593, 987
TatI	WGTACW	1 cut(s)	335
TauI	GCSGC	1 cut(s)	1042
TfiI	GAWTC	1 cut(s)	969
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	7 cut(s)	185, 280, 410, 802, 907, 979, 1003
TseFI	GTSAC	1 cut(s)	833
TseI	GCWGC	3 cut(s)	199, 438, 1229
Tsp45I	GTSAC	1 cut(s)	833
TspDTI	ATGAA	4 cut(s)	10, 252, 629, 1277
TspRI	CASTG	7 cut(s)	185, 280, 410, 802, 907, 979, 1003
VneI	GTGCAC	1 cut(s)	181
XapI	RAATTY	1 cut(s)	560
XbaI	TCTAGA	1 cut(s)	1255
XceI	RCATGY	2 cut(s)	854, 950
XmaJI	CCTAGG	1 cut(s)	502
XspI	CTAG	2 cut(s)	503, 1256
ZrmI	AGTACT	1 cut(s)	337
Zsp2I	ATGCAT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.