Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008008.1

Orthogroup ID

OG0009839

Physical Location & Seq

Genomic Coordinates Reverse (-)

5544 .. 7061

Gene Structure 1518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008008.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atggcacctgctcaaccatttacagacattgaccaagactgtaaaccatgtgtaaatgcaaaagttgaactacatacagagaacaggaattccctagaaaactcatctttggaggacataccgtgcatgagtaaccgtgacgacaactgcatcaggatgaaatctgtcctgaatggaacagatgaggctttaatgtgcattgcggatgtggatgttgacataatcgaatgtggaaataatcattaccacagcatgaaggctgaaactgaagaccctgatgcaactgaatattcaagctcctttgcggacactgtgtctgacactgagaattttagtgaaggtgaagtggaatcccagtcctttccacagaatggtttgacatctgcttttgatgcatttagtagtgcatttcaaatgaggaagaagaagttgacaaatcactggaggacctttatacgtcctgtgatgtggcggtgcaaatggatggaattgagaattaaagaaattgaatcacaagaattgaattattcccgagcgcttgcagcatatgatcaaagaaaacgttcagcatttgaccaatctatattagaagaatctggttcaaagtcattgccattttctagtcagggactacgaaaaaaatctatcaagcggaggaaacgcaagagaattgaagagacaactgatattgcgtcgtatatatcacatcataacgcgttttcctattttgaaaacaagagatccgatcctgatagcacatctctggctgacgaatttagtaatgcaggtaatagtttttgccttgtgttgttctttttcattgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

275

Amino Acids

31.5

Weight (kDa)

5.15

Isoelectric Point (pI)

60.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59670
fragaria_vesca	FvH4_5g30050
malus_domestica	MD04G1049200.v1.1 MD17G1177900.v1.1
prunus_persica	Prupe.1G207400_v2.0.a1 Prupe.1G207400_v2.0.a1
pyrus_communis	pycom04g04340 pycom17g18680 pycom17g18690
rosa_chinensis	RchiOBHm_Chr7g0224241
rosa_laevigata	RLG00000001911
rosa_multiflora	Rmu_sc0008008.1_g000002 Rmu_sc0023501.1_g000004
rosa_roxburghii	Rroxscaffold_3G00235030
rosa_rugosa	Rorug07G0221600
rosa_samantha	Rh7AG366500 Rh7BG330000 Rh7BG357500 Rh7CG384800 Rh7DG360400
rosa_wichuraiana	Rw7G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	16
Acc36I	ACCTGC	2 cut(s)	16, 776
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	371
AccII	CGCG	1 cut(s)	716
AciI	CCGC	4 cut(s)	203, 305, 472, 652
AclI	AACGTT	1 cut(s)	562
AclWI	GGATC	2 cut(s)	735, 740
AcsI	RAATTY	3 cut(s)	88, 328, 773
AcuI	CTGAAG	1 cut(s)	288
AfeI	AGCGCT	1 cut(s)	537
AfiI	CCNNNNNNNGG	1 cut(s)	371
AflIII	ACRYGT	1 cut(s)	714
AgsI	TTSAA	9 cut(s)	68, 294, 413, 509, 523, 603, 674, 731, 824
AhdI	GACNNNNNGTC	1 cut(s)	313
AloI	GAACNNNNNNTCC	2 cut(s)	74, 106
AluBI	AGCT	1 cut(s)	297
AluI	AGCT	1 cut(s)	297
Alw26I	GTCTC	1 cut(s)	671
AlwI	GGATC	2 cut(s)	735, 740
Ama87I	CYCGRG	1 cut(s)	531
Aor51HI	AGCGCT	1 cut(s)	537
ApeKI	GCWGC	1 cut(s)	542
ApoI	RAATTY	3 cut(s)	88, 328, 773
Asp700I	GAANNNNTTC	1 cut(s)	562
AspLEI	GCGC	1 cut(s)	538
AspS9I	GGNCC	1 cut(s)	447
AsuHPI	GGTGA	1 cut(s)	353
AvaI	CYCGRG	1 cut(s)	531
AvaII	GGWCC	1 cut(s)	447
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	554
BccI	CCATC	1 cut(s)	478
BclI	TGATCA	1 cut(s)	550
BcoDI	GTCTC	1 cut(s)	671
BfaI	CTAG	2 cut(s)	95, 621
BfoI	RGCGCY	1 cut(s)	539
BfuAI	ACCTGC	2 cut(s)	16, 776
BisI	GCNGC	1 cut(s)	543
BlsI	GCNGC	1 cut(s)	544
Bme18I	GGWCC	1 cut(s)	447
BmeRI	GACNNNNNGTC	1 cut(s)	313
BmeT110I	CYCGRG	1 cut(s)	531
BmgT120I	GGNCC	1 cut(s)	447
BmiI	GGNNCC	1 cut(s)	6
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	3 cut(s)	159, 268, 382
BmuI	ACTGGG	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	463
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse1I	ACTGG	2 cut(s)	355, 446
Bse3DI	GCAATG	2 cut(s)	198, 608
BseGI	GGATG	4 cut(s)	162, 211, 217, 489
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMI	GCAATG	2 cut(s)	198, 608
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	2 cut(s)	355, 446
BseXI	GCAGC	1 cut(s)	554
Bsh1236I	CGCG	1 cut(s)	716
BshNI	GGYRCC	1 cut(s)	4
BsiHKCI	CYCGRG	1 cut(s)	531
BslFI	GGGAC	1 cut(s)	642
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmAI	GTCTC	1 cut(s)	671
BsmFI	GGGAC	1 cut(s)	642
BsoBI	CYCGRG	1 cut(s)	531
Bsp143I	GATC	3 cut(s)	550, 740, 745
BspACI	CCGC	4 cut(s)	203, 305, 472, 652
BspCNI	CTCAG	1 cut(s)	316
BspFNI	CGCG	1 cut(s)	716
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	2 cut(s)	16, 776
BspPI	GGATC	2 cut(s)	735, 740
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	2 cut(s)	198, 608
BsrI	ACTGG	2 cut(s)	355, 446
BssMI	GATC	3 cut(s)	550, 740, 745
Bst4CI	ACNGT	4 cut(s)	41, 123, 137, 313
Bst6I	CTCTTC	1 cut(s)	669
BstC8I	GCNNGC	1 cut(s)	540
BstDEI	CTNAG	1 cut(s)	324
BstF5I	GGATG	4 cut(s)	162, 211, 217, 489
BstFNI	CGCG	1 cut(s)	716
BstH2I	RGCGCY	1 cut(s)	539
BstHHI	GCGC	1 cut(s)	538
BstKTI	GATC	3 cut(s)	553, 743, 748
BstMAI	GTCTC	1 cut(s)	671
BstMBI	GATC	3 cut(s)	550, 740, 745
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 542
BstUI	CGCG	1 cut(s)	716
BstV1I	GCAGC	1 cut(s)	554
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	1 cut(s)	740
BstYI	RGATCY	1 cut(s)	740
BtsCI	GGATG	4 cut(s)	162, 211, 217, 489
BtsIMutI	CAGTG	3 cut(s)	309, 321, 439
BveI	ACCTGC	2 cut(s)	16, 776
Cac8I	GCNNGC	1 cut(s)	540
CfoI	GCGC	1 cut(s)	538
Cfr13I	GGNCC	1 cut(s)	447
CseI	GACGC	1 cut(s)	681
CviAII	CATG	3 cut(s)	48, 127, 253
CviJI	RGCY	4 cut(s)	188, 260, 297, 767
CviKI_1	RGCY	4 cut(s)	188, 260, 297, 767
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	3 cut(s)	552, 742, 747
DpnII	GATC	3 cut(s)	550, 740, 745
DriI	GACNNNNNGTC	1 cut(s)	313
Eam1104I	CTCTTC	1 cut(s)	669
Eam1105I	GACNNNNNGTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	669
Eco47I	GGWCC	1 cut(s)	447
Eco47III	AGCGCT	1 cut(s)	537
Eco57I	CTGAAG	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	531
EcoO109I	RGGNCCY	1 cut(s)	447
EcoRI	GAATTC	1 cut(s)	88
EcoT22I	ATGCAT	1 cut(s)	397
FaeI	CATG	3 cut(s)	51, 130, 256
FaqI	GGGAC	1 cut(s)	642
FatI	CATG	3 cut(s)	47, 126, 252
FauNDI	CATATG	1 cut(s)	547
FbaI	TGATCA	1 cut(s)	550
Fnu4HI	GCNGC	1 cut(s)	543
FokI	GGATG	4 cut(s)	169, 218, 224, 496
Fsp4HI	GCNGC	1 cut(s)	543
FspBI	CTAG	2 cut(s)	95, 621
GlaI	GCGC	1 cut(s)	537
GluI	GCNGC	1 cut(s)	543
GsuI	CTGGAG	1 cut(s)	463
HaeII	RGCGCY	1 cut(s)	539
HgaI	GACGC	1 cut(s)	681
HhaI	GCGC	1 cut(s)	538
Hin1II	CATG	3 cut(s)	51, 130, 256
Hin6I	GCGC	1 cut(s)	536
HinP1I	GCGC	1 cut(s)	536
HincII	GTYRAC	2 cut(s)	217, 432
HindII	GTYRAC	2 cut(s)	217, 432
HinfI	GANTC	3 cut(s)	350, 509, 593
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	3 cut(s)	44, 217, 432
Hpy188I	TCNGA	2 cut(s)	319, 745
Hpy188III	TCNNGA	4 cut(s)	154, 169, 531, 749
Hpy8I	GTNNAC	3 cut(s)	44, 217, 432
Hpy99I	CGWCG	1 cut(s)	697
HpyAV	CCTTC	2 cut(s)	250, 332
HpyCH4III	ACNGT	4 cut(s)	41, 123, 137, 313
HpyCH4IV	ACGT	2 cut(s)	457, 562
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 542
HpyF3I	CTNAG	1 cut(s)	324
HpySE526I	ACGT	2 cut(s)	457, 562
Hsp92II	CATG	3 cut(s)	51, 130, 256
HspAI	GCGC	1 cut(s)	536
Ksp22I	TGATCA	1 cut(s)	550
Kzo9I	GATC	3 cut(s)	550, 740, 745
LmnI	GCTCC	1 cut(s)	302
Lsp1109I	GCAGC	1 cut(s)	554
LweI	GCATC	3 cut(s)	159, 268, 382
MaeI	CTAG	2 cut(s)	95, 621
MaeII	ACGT	2 cut(s)	457, 562
MaeIII	GTNAC	2 cut(s)	131, 137
MalI	GATC	3 cut(s)	552, 742, 747
MboI	GATC	3 cut(s)	550, 740, 745
MboII	GAAGA	5 cut(s)	281, 433, 436, 602, 686
MflI	RGATCY	1 cut(s)	740
MluCI	AATT	9 cut(s)	88, 328, 488, 495, 504, 518, 523, 669, 773
MluI	ACGCGT	1 cut(s)	714
MnlI	CCTC	5 cut(s)	106, 178, 411, 438, 648
Mph1103I	ATGCAT	1 cut(s)	397
MroXI	GAANNNNTTC	1 cut(s)	562
MseI	TTAA	2 cut(s)	191, 498
MslI	CAYNNNNRTG	1 cut(s)	155
MvnI	CGCG	1 cut(s)	716
MwoI	GCNNNNNNNGC	2 cut(s)	392, 542
NdeI	CATATG	1 cut(s)	547
NdeII	GATC	3 cut(s)	550, 740, 745
NlaIII	CATG	3 cut(s)	51, 130, 256
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	137
NsiI	ATGCAT	1 cut(s)	397
PaqCI	CACCTGC	1 cut(s)	16
PdmI	GAANNNNTTC	1 cut(s)	562
PfeI	GAWTC	3 cut(s)	350, 509, 593
PflMI	CCANNNNNTGG	1 cut(s)	371
PkrI	GCNGC	1 cut(s)	544
PpuMI	RGGWCCY	1 cut(s)	447
Psp1406I	AACGTT	1 cut(s)	562
Psp5II	RGGWCCY	1 cut(s)	447
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	447
PspPPI	RGGWCCY	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	740
RseI	CAYNNNNRTG	1 cut(s)	155
SaqAI	TTAA	2 cut(s)	191, 498
SatI	GCNGC	1 cut(s)	543
Sau3AI	GATC	3 cut(s)	550, 740, 745
Sau96I	GGNCC	1 cut(s)	447
SetI	ASST	7 cut(s)	10, 299, 343, 452, 460, 565, 790
SfaNI	GCATC	3 cut(s)	159, 268, 382
SinI	GGWCC	1 cut(s)	447
SmiMI	CAYNNNNRTG	1 cut(s)	155
Sse9I	AATT	9 cut(s)	88, 328, 488, 495, 504, 518, 523, 669, 773
SsiI	CCGC	4 cut(s)	203, 305, 472, 652
SspI	AATATT	1 cut(s)	290
SspMI	CTAG	2 cut(s)	95, 621
TaaI	ACNGT	4 cut(s)	41, 123, 137, 313
TaiI	ACGT	2 cut(s)	460, 565
TaqI	TCGA	1 cut(s)	225
TasI	AATT	9 cut(s)	88, 328, 488, 495, 504, 518, 523, 669, 773
TfiI	GAWTC	3 cut(s)	350, 509, 593
Tru1I	TTAA	2 cut(s)	191, 498
Tru9I	TTAA	2 cut(s)	191, 498
TscAI	CASTG	3 cut(s)	316, 328, 446
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	1 cut(s)	542
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	3 cut(s)	173, 269, 808
TspRI	CASTG	3 cut(s)	316, 328, 446
Van91I	CCANNNNNTGG	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	447
XapI	RAATTY	3 cut(s)	88, 328, 773
XmnI	GAANNNNTTC	1 cut(s)	562
XspI	CTAG	2 cut(s)	95, 621
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.