polyadenylation-dependent mRNA catabolic process
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G12990 AT3G12990 AT3G12990 AT3G12990 AT3G60500 AT3G60500 AT3G60500 AT3G60500 |
| fragaria_vesca | FvH4_1g30010 FvH4_1g30010 |
| malus_domestica | MD03G1172100.v1.1 MD11G1189800.v1.1 |
| prunus_persica | Prupe.4G254800_v2.0.a1 Prupe.4G254800_v2.0.a1 Prupe.4G254800_v2.0.a1 |
| pyrus_communis | pycom03g12920 |
| rosa_chinensis | RchiOBHm_Chr2g0134251 RchiOBHm_Chr3g0492251 |
| rosa_laevigata | RLG00000022789 |
| rosa_multiflora | Rmu_sc0000418.1_g000008 Rmu_sc0002530.1_g000013 Rmu_sc0003579.1_g000006 |
| rosa_roxburghii | Rroxscaffold_6G00392470 |
| rosa_rugosa | Rorug02G0315300 Rorug03G0252700 |
| rosa_samantha | Rh2AG367900 Rh2BG374300 Rh2CG351900 Rh2DG391500 Rh3AG302700 Rh3BG338700 Rh3CG335800 Rh3DG337900 |
| rosa_wichuraiana | Rw3G026700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 2 cut(s) | 721, 1182 |
| AciI | CCGC | 2 cut(s) | 1053, 1300 |
| AclWI | GGATC | 3 cut(s) | 269, 1124, 1137 |
| AcsI | RAATTY | 2 cut(s) | 50, 257 |
| AcuI | CTGAAG | 1 cut(s) | 915 |
| AfaI | GTAC | 1 cut(s) | 207 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 233, 733, 1065 |
| AflIII | ACRYGT | 1 cut(s) | 979 |
| AgsI | TTSAA | 7 cut(s) | 161, 662, 792, 833, 986, 1048, 1122 |
| AjnI | CCWGG | 2 cut(s) | 289, 298 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 147, 179, 385, 417 |
| Alw21I | GWGCWC | 2 cut(s) | 81, 1154 |
| Alw26I | GTCTC | 2 cut(s) | 243, 493 |
| AlwI | GGATC | 3 cut(s) | 269, 1124, 1137 |
| Ama87I | CYCGRG | 1 cut(s) | 972 |
| AoxI | GGCC | 1 cut(s) | 97 |
| ApeKI | GCWGC | 7 cut(s) | 458, 470, 479, 797, 800, 959, 1037 |
| ApoI | RAATTY | 2 cut(s) | 50, 257 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 570 |
| AspLEI | GCGC | 2 cut(s) | 722, 1183 |
| AspS9I | GGNCC | 4 cut(s) | 646, 905, 1055, 1069 |
| AsuC2I | CCSGG | 1 cut(s) | 735 |
| AsuHPI | GGTGA | 2 cut(s) | 652, 877 |
| AvaI | CYCGRG | 1 cut(s) | 972 |
| AvaII | GGWCC | 4 cut(s) | 646, 905, 1055, 1069 |
| BamHI | GGATCC | 1 cut(s) | 1129 |
| BanII | GRGCYC | 1 cut(s) | 81 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 528, 560 |
| Bbv12I | GWGCWC | 2 cut(s) | 81, 1154 |
| BbvI | GCAGC | 7 cut(s) | 445, 457, 491, 784, 787, 946, 1024 |
| BccI | CCATC | 4 cut(s) | 83, 391, 637, 1250 |
| BceAI | ACGGC | 2 cut(s) | 339, 1183 |
| BciT130I | CCWGG | 2 cut(s) | 291, 300 |
| BciVI | GTATCC | 1 cut(s) | 1234 |
| BclI | TGATCA | 1 cut(s) | 540 |
| BcnI | CCSGG | 1 cut(s) | 735 |
| BcoDI | GTCTC | 2 cut(s) | 243, 493 |
| BfaI | CTAG | 2 cut(s) | 386, 554 |
| BfmI | CTRYAG | 4 cut(s) | 309, 513, 912, 960 |
| BfuI | GTATCC | 1 cut(s) | 1234 |
| BisI | GCNGC | 7 cut(s) | 459, 471, 480, 798, 801, 960, 1038 |
| BlsI | GCNGC | 7 cut(s) | 460, 472, 481, 799, 802, 961, 1039 |
| Bme1390I | CCNGG | 3 cut(s) | 291, 300, 735 |
| Bme18I | GGWCC | 4 cut(s) | 646, 905, 1055, 1069 |
| BmeT110I | CYCGRG | 1 cut(s) | 972 |
| BmgT120I | GGNCC | 4 cut(s) | 646, 905, 1055, 1069 |
| BmiI | GGNNCC | 6 cut(s) | 567, 648, 1057, 1070, 1071, 1131 |
| BmrFI | CCNGG | 3 cut(s) | 291, 300, 735 |
| BmsI | GCATC | 2 cut(s) | 445, 1267 |
| BpuMI | CCSGG | 1 cut(s) | 735 |
| Bsa29I | ATCGAT | 1 cut(s) | 333 |
| BsaI | GGTCTC | 2 cut(s) | 243, 493 |
| BsaJI | CCNNGG | 1 cut(s) | 734 |
| BsaWI | WCCGGW | 1 cut(s) | 1220 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 576, 606 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 233, 733, 1065 |
| Bse3DI | GCAATG | 1 cut(s) | 769 |
| BseBI | CCWGG | 2 cut(s) | 291, 300 |
| BseCI | ATCGAT | 1 cut(s) | 333 |
| BseDI | CCNNGG | 1 cut(s) | 734 |
| BseGI | GGATG | 4 cut(s) | 547, 874, 1096, 1261 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 233, 733, 1065 |
| BseMI | GCAATG | 1 cut(s) | 769 |
| BseMII | CTCAG | 5 cut(s) | 66, 94, 212, 957, 1092 |
| BseRI | GAGGAG | 1 cut(s) | 534 |
| BseXI | GCAGC | 7 cut(s) | 445, 457, 491, 784, 787, 946, 1024 |
| BsgI | GTGCAG | 2 cut(s) | 378, 493 |
| Bsh1285I | CGRYCG | 1 cut(s) | 337 |
| BshFI | GGCC | 1 cut(s) | 99 |
| BshVI | ATCGAT | 1 cut(s) | 333 |
| BsiEI | CGRYCG | 1 cut(s) | 337 |
| BsiHKAI | GWGCWC | 2 cut(s) | 81, 1154 |
| BsiHKCI | CYCGRG | 1 cut(s) | 972 |
| BsiSI | CCGG | 2 cut(s) | 734, 1221 |
| BslFI | GGGAC | 3 cut(s) | 336, 1041, 1082 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 233, 733, 1065 |
| BsmAI | GTCTC | 2 cut(s) | 243, 493 |
| BsmFI | GGGAC | 3 cut(s) | 336, 1041, 1082 |
| BsnI | GGCC | 1 cut(s) | 99 |
| Bso31I | GGTCTC | 2 cut(s) | 243, 493 |
| BsoBI | CYCGRG | 1 cut(s) | 972 |
| Bsp1286I | GDGCHC | 2 cut(s) | 81, 1154 |
| Bsp143I | GATC | 7 cut(s) | 246, 274, 334, 540, 813, 946, 1129 |
| BspACI | CCGC | 2 cut(s) | 1053, 1300 |
| BspANI | GGCC | 1 cut(s) | 99 |
| BspCNI | CTCAG | 5 cut(s) | 67, 93, 211, 956, 1091 |
| BspDI | ATCGAT | 1 cut(s) | 333 |
| BspHI | TCATGA | 1 cut(s) | 486 |
| BspLI | GGNNCC | 6 cut(s) | 567, 648, 1057, 1070, 1071, 1131 |
| BspMAI | CTGCAG | 2 cut(s) | 313, 964 |
| BspPI | GGATC | 3 cut(s) | 269, 1124, 1137 |
| BspTNI | GGTCTC | 2 cut(s) | 243, 493 |
| BsrDI | GCAATG | 1 cut(s) | 769 |
| BssECI | CCNNGG | 1 cut(s) | 734 |
| BssMI | GATC | 7 cut(s) | 246, 274, 334, 540, 813, 946, 1129 |
| Bst2UI | CCWGG | 2 cut(s) | 291, 300 |
| Bst4CI | ACNGT | 6 cut(s) | 37, 514, 691, 697, 845, 913 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 467 |
| BstC8I | GCNNGC | 2 cut(s) | 116, 776 |
| BstDEI | CTNAG | 8 cut(s) | 75, 80, 198, 344, 448, 943, 1078, 1140 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 231 |
| BstF5I | GGATG | 4 cut(s) | 547, 874, 1096, 1261 |
| BstHHI | GCGC | 2 cut(s) | 722, 1183 |
| BstKTI | GATC | 7 cut(s) | 249, 277, 337, 543, 816, 949, 1132 |
| BstMAI | GTCTC | 2 cut(s) | 243, 493 |
| BstMBI | GATC | 7 cut(s) | 246, 274, 334, 540, 813, 946, 1129 |
| BstMCI | CGRYCG | 1 cut(s) | 337 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 76, 467, 476, 479, 717 |
| BstNI | CCWGG | 2 cut(s) | 291, 300 |
| BstNSI | RCATGY | 1 cut(s) | 983 |
| BstSCI | CCNGG | 3 cut(s) | 289, 298, 733 |
| BstSFI | CTRYAG | 4 cut(s) | 309, 513, 912, 960 |
| BstV1I | GCAGC | 7 cut(s) | 445, 457, 491, 784, 787, 946, 1024 |
| BstX2I | RGATCY | 1 cut(s) | 1129 |
| BstYI | RGATCY | 1 cut(s) | 1129 |
| Bsu15I | ATCGAT | 1 cut(s) | 333 |
| BsuI | GTATCC | 1 cut(s) | 1234 |
| BsuRI | GGCC | 1 cut(s) | 99 |
| BsuTUI | ATCGAT | 1 cut(s) | 333 |
| BtsCI | GGATG | 4 cut(s) | 547, 874, 1096, 1261 |
| BtsI | GCAGTG | 1 cut(s) | 318 |
| BtsIMutI | CAGTG | 3 cut(s) | 318, 510, 1100 |
| Cac8I | GCNNGC | 2 cut(s) | 116, 776 |
| CciI | TCATGA | 1 cut(s) | 486 |
| CfoI | GCGC | 2 cut(s) | 722, 1183 |
| Cfr13I | GGNCC | 4 cut(s) | 646, 905, 1055, 1069 |
| ClaI | ATCGAT | 1 cut(s) | 333 |
| CseI | GACGC | 2 cut(s) | 333, 767 |
| Csp6I | GTAC | 1 cut(s) | 206 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 558, 593 |
| CviAII | CATG | 3 cut(s) | 176, 487, 980 |
| CviQI | GTAC | 1 cut(s) | 206 |
| DdeI | CTNAG | 8 cut(s) | 75, 80, 198, 344, 448, 943, 1078, 1140 |
| DpnI | GATC | 7 cut(s) | 248, 276, 336, 542, 815, 948, 1131 |
| DpnII | GATC | 7 cut(s) | 246, 274, 334, 540, 813, 946, 1129 |
| Ecl136II | GAGCTC | 1 cut(s) | 79 |
| Eco24I | GRGCYC | 1 cut(s) | 81 |
| Eco31I | GGTCTC | 2 cut(s) | 243, 493 |
| Eco32I | GATATC | 1 cut(s) | 969 |
| Eco47I | GGWCC | 4 cut(s) | 646, 905, 1055, 1069 |
| Eco53kI | GAGCTC | 1 cut(s) | 79 |
| Eco57I | CTGAAG | 1 cut(s) | 915 |
| Eco88I | CYCGRG | 1 cut(s) | 972 |
| EcoICRI | GAGCTC | 1 cut(s) | 79 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 231 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1069 |
| EcoRII | CCWGG | 2 cut(s) | 289, 298 |
| EcoRV | GATATC | 1 cut(s) | 969 |
| EcoT38I | GRGCYC | 1 cut(s) | 81 |
| FaeI | CATG | 3 cut(s) | 179, 490, 983 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 147, 179, 1098, 1130 |
| FaqI | GGGAC | 3 cut(s) | 336, 1041, 1082 |
| FatI | CATG | 3 cut(s) | 175, 486, 979 |
| FbaI | TGATCA | 1 cut(s) | 540 |
| Fnu4HI | GCNGC | 7 cut(s) | 459, 471, 480, 798, 801, 960, 1038 |
| FokI | GGATG | 4 cut(s) | 534, 861, 1103, 1268 |
| FriOI | GRGCYC | 1 cut(s) | 81 |
| Fsp4HI | GCNGC | 7 cut(s) | 459, 471, 480, 798, 801, 960, 1038 |
| FspBI | CTAG | 2 cut(s) | 386, 554 |
| FspI | TGCGCA | 2 cut(s) | 721, 1182 |
| GlaI | GCGC | 2 cut(s) | 721, 1182 |
| GluI | GCNGC | 7 cut(s) | 459, 471, 480, 798, 801, 960, 1038 |
| HaeIII | GGCC | 1 cut(s) | 99 |
| HapII | CCGG | 2 cut(s) | 734, 1221 |
| HgaI | GACGC | 2 cut(s) | 333, 767 |
| HhaI | GCGC | 2 cut(s) | 722, 1183 |
| Hin1II | CATG | 3 cut(s) | 179, 490, 983 |
| Hin6I | GCGC | 2 cut(s) | 720, 1181 |
| HinP1I | GCGC | 2 cut(s) | 720, 1181 |
| HincII | GTYRAC | 2 cut(s) | 33, 40 |
| HindII | GTYRAC | 2 cut(s) | 33, 40 |
| HindIII | AAGCTT | 2 cut(s) | 116, 853 |
| HinfI | GANTC | 4 cut(s) | 172, 305, 371, 1097 |
| HpaI | GTTAAC | 1 cut(s) | 40 |
| HpaII | CCGG | 2 cut(s) | 734, 1221 |
| HphI | GGTGA | 2 cut(s) | 652, 877 |
| Hpy166II | GTNNAC | 3 cut(s) | 33, 40, 751 |
| Hpy188I | TCNGA | 7 cut(s) | 76, 83, 154, 171, 895, 946, 1081 |
| Hpy8I | GTNNAC | 3 cut(s) | 33, 40, 751 |
| HpyAV | CCTTC | 9 cut(s) | 227, 431, 613, 737, 776, 856, 916, 1180, 1231 |
| HpyCH4III | ACNGT | 6 cut(s) | 37, 514, 691, 697, 845, 913 |
| HpyCH4IV | ACGT | 1 cut(s) | 608 |
| HpyCH4V | TGCA | 7 cut(s) | 70, 311, 359, 461, 510, 803, 962 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 76, 467, 476, 479, 717 |
| HpyF3I | CTNAG | 8 cut(s) | 75, 80, 198, 344, 448, 943, 1078, 1140 |
| HpySE526I | ACGT | 1 cut(s) | 608 |
| Hsp92II | CATG | 3 cut(s) | 179, 490, 983 |
| HspAI | GCGC | 2 cut(s) | 720, 1181 |
| KflI | GGGWCCC | 1 cut(s) | 1069 |
| Ksp22I | TGATCA | 1 cut(s) | 540 |
| KspAI | GTTAAC | 1 cut(s) | 40 |
| Kzo9I | GATC | 7 cut(s) | 246, 274, 334, 540, 813, 946, 1129 |
| Lsp1109I | GCAGC | 7 cut(s) | 445, 457, 491, 784, 787, 946, 1024 |
| LweI | GCATC | 2 cut(s) | 445, 1267 |
| MaeI | CTAG | 2 cut(s) | 386, 554 |
| MaeII | ACGT | 1 cut(s) | 608 |
| MaeIII | GTNAC | 5 cut(s) | 190, 372, 691, 1135, 1216 |
| MalI | GATC | 7 cut(s) | 248, 276, 336, 542, 815, 948, 1131 |
| MboI | GATC | 7 cut(s) | 246, 274, 334, 540, 813, 946, 1129 |
| MboII | GAAGA | 9 cut(s) | 241, 674, 752, 780, 836, 1040, 1043, 1168, 1246 |
| MflI | RGATCY | 1 cut(s) | 1129 |
| MhlI | GDGCHC | 2 cut(s) | 81, 1154 |
| MluCI | AATT | 5 cut(s) | 50, 257, 1042, 1063, 1226 |
| MlyI | GAGTC | 2 cut(s) | 166, 380 |
| MroXI | GAANNNNTTC | 1 cut(s) | 570 |
| MseI | TTAA | 5 cut(s) | 39, 126, 621, 699, 1272 |
| MslI | CAYNNNNRTG | 2 cut(s) | 638, 1254 |
| MspI | CCGG | 2 cut(s) | 734, 1221 |
| MspR9I | CCNGG | 3 cut(s) | 291, 300, 735 |
| MvaI | CCWGG | 2 cut(s) | 291, 300 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 76, 467, 476, 479, 717 |
| NciI | CCSGG | 1 cut(s) | 735 |
| NdeII | GATC | 7 cut(s) | 246, 274, 334, 540, 813, 946, 1129 |
| NlaIII | CATG | 3 cut(s) | 179, 490, 983 |
| NlaIV | GGNNCC | 6 cut(s) | 567, 648, 1057, 1070, 1071, 1131 |
| NmuCI | GTSAC | 3 cut(s) | 190, 372, 691 |
| NsbI | TGCGCA | 2 cut(s) | 721, 1182 |
| NspI | RCATGY | 1 cut(s) | 983 |
| PaeR7I | CTCGAG | 1 cut(s) | 972 |
| PagI | TCATGA | 1 cut(s) | 486 |
| PciI | ACATGT | 1 cut(s) | 979 |
| PdmI | GAANNNNTTC | 1 cut(s) | 570 |
| PfeI | GAWTC | 2 cut(s) | 305, 1097 |
| PkrI | GCNGC | 7 cut(s) | 460, 472, 481, 799, 802, 961, 1039 |
| Ple19I | CGATCG | 1 cut(s) | 337 |
| PleI | GAGTC | 2 cut(s) | 166, 379 |
| PpsI | GAGTC | 2 cut(s) | 166, 379 |
| PpuMI | RGGWCCY | 1 cut(s) | 1069 |
| PscI | ACATGT | 1 cut(s) | 979 |
| Psp124BI | GAGCTC | 1 cut(s) | 81 |
| Psp5II | RGGWCCY | 1 cut(s) | 1069 |
| Psp6I | CCWGG | 2 cut(s) | 289, 298 |
| PspGI | CCWGG | 2 cut(s) | 289, 298 |
| PspN4I | GGNNCC | 6 cut(s) | 567, 648, 1057, 1070, 1071, 1131 |
| PspPI | GGNCC | 4 cut(s) | 646, 905, 1055, 1069 |
| PspPPI | RGGWCCY | 1 cut(s) | 1069 |
| PstI | CTGCAG | 2 cut(s) | 313, 964 |
| PsuI | RGATCY | 1 cut(s) | 1129 |
| PvuI | CGATCG | 1 cut(s) | 337 |
| RsaI | GTAC | 1 cut(s) | 207 |
| RsaNI | GTAC | 1 cut(s) | 206 |
| RseI | CAYNNNNRTG | 2 cut(s) | 638, 1254 |
| SacI | GAGCTC | 1 cut(s) | 81 |
| SaqAI | TTAA | 5 cut(s) | 39, 126, 621, 699, 1272 |
| SatI | GCNGC | 7 cut(s) | 459, 471, 480, 798, 801, 960, 1038 |
| Sau3AI | GATC | 7 cut(s) | 246, 274, 334, 540, 813, 946, 1129 |
| Sau96I | GGNCC | 4 cut(s) | 646, 905, 1055, 1069 |
| SchI | GAGTC | 2 cut(s) | 166, 380 |
| ScrFI | CCNGG | 3 cut(s) | 291, 300, 735 |
| SduI | GDGCHC | 2 cut(s) | 81, 1154 |
| SfaNI | GCATC | 2 cut(s) | 445, 1267 |
| SfcI | CTRYAG | 4 cut(s) | 309, 513, 912, 960 |
| Sfr274I | CTCGAG | 1 cut(s) | 972 |
| SinI | GGWCC | 4 cut(s) | 646, 905, 1055, 1069 |
| SlaI | CTCGAG | 1 cut(s) | 972 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 638, 1254 |
| SmlI | CTYRAG | 1 cut(s) | 972 |
| SmoI | CTYRAG | 1 cut(s) | 972 |
| Sse9I | AATT | 5 cut(s) | 50, 257, 1042, 1063, 1226 |
| SsiI | CCGC | 2 cut(s) | 1053, 1300 |
| SspI | AATATT | 1 cut(s) | 466 |
| SspMI | CTAG | 2 cut(s) | 386, 554 |
| SstI | GAGCTC | 1 cut(s) | 81 |
| StyD4I | CCNGG | 3 cut(s) | 289, 298, 733 |
| TaaI | ACNGT | 6 cut(s) | 37, 514, 691, 697, 845, 913 |
| TaiI | ACGT | 1 cut(s) | 611 |
| TaqI | TCGA | 4 cut(s) | 245, 333, 973, 1148 |
| TasI | AATT | 5 cut(s) | 50, 257, 1042, 1063, 1226 |
| TfiI | GAWTC | 2 cut(s) | 305, 1097 |
| Tru1I | TTAA | 5 cut(s) | 39, 126, 621, 699, 1272 |
| Tru9I | TTAA | 5 cut(s) | 39, 126, 621, 699, 1272 |
| TscAI | CASTG | 3 cut(s) | 318, 517, 1107 |
| TseFI | GTSAC | 3 cut(s) | 190, 372, 691 |
| TseI | GCWGC | 7 cut(s) | 458, 470, 479, 797, 800, 959, 1037 |
| Tsp45I | GTSAC | 3 cut(s) | 190, 372, 691 |
| TspDTI | ATGAA | 4 cut(s) | 246, 413, 758, 1178 |
| TspGWI | ACGGA | 3 cut(s) | 267, 269, 1019 |
| TspRI | CASTG | 3 cut(s) | 318, 517, 1107 |
| VpaK11BI | GGWCC | 4 cut(s) | 646, 905, 1055, 1069 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 231 |
| XapI | RAATTY | 2 cut(s) | 50, 257 |
| XceI | RCATGY | 1 cut(s) | 983 |
| XhoI | CTCGAG | 1 cut(s) | 972 |
| XmnI | GAANNNNTTC | 1 cut(s) | 570 |
| XspI | CTAG | 2 cut(s) | 386, 554 |