Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0003830

Physical Location & Seq

Genomic Coordinates Reverse (-)

23419848 .. 23425505

Gene Structure 5658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1172100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGGAGCAGAGATTAGCGAACGCATCGCATCAAACGCTGAACCAGAAGAAGTTCATCGAGACCGCTCTACTTGCCGACCTCCGAGCAGACGGCCGCCGCCCCTTCGACTACCGTAACCTCACCATCAAGTTCGGCAAAGACGAGGGCTCTGCGGAGGTGCAGCTGGGACAAACTCACGTAATGGCCATCGTCACTGCCCAGCTTGTCCAGCCCTACCGCGACAGGCCCAATGACGGCACTCTCTCCATCTTCACCGAGTTCTCCCCAATGGCCGACCCCTCCTTTGAGCCAGGCCGCCCTGGCGAGAATGCCGTCGAGCTCGGCCGCGTAATCGACCGCGGGCTTAGGGAAAGTCGAGCAGTTGATACAGAATCGCTTTGTGTTCTTTCGGGGAAGCTAGTTTGGGCTATCCGTGTTGATCTCCATATTTTAGATAATGGAGGTAACCTTATTGATGCTGCTAACATTGCGGCATTAGCTGCTTTGTTGACGTTTCGGAGGCCTGAAATCTCCTTGGGGGGAGAAGATGTTCAGGAAGTGATTGTACATGCACCTGAGGAGAGGGAGCCTCTTCATCTGATCATACATCATCTCCCTATAGCAGTAACCTTTGCATTCTTCAGTTATGAGAGTAGTGTGGTGATAGATCCAACCCATGAGGAAGAGGCTTTTATGGGGGGGCGAATGACTGCAACAATTAATGCAAATGGAGATGTTTGTGCTATTCAAAAAGCTGGAGGGGAGGGTGTCTTGCAGAGTGTTATAATGCAATGTTTGCGAATTGCTTCTGTCAAGGCTGGTGCTATGACAGAGAAGATCAAGAAGGCGGTTGATTCATACAATACAGAAAGAGCATTACGGAAGATCAAGCGCCATACTTCTTCTGTTCCCATGGATGTTGATGGAGGTGCTTCTCATATAGGTGTGCAGCAAAACTCTTCTTCTGTTAATCATATGGAGGGAATAAAGATGATGTCTGAGGAAGGAGTTGCAAATCAAAGTGAGGGTGCTGAAAGTGAAACTAAATTATCAGACAAAAAACAAACTAATAAGGGTAATGAAGATGCGAAGGATTTTATTGGAGGCCCCTCAATTTGGGATCCTTACTCAAAGGGTGTTGATTCAGATTTTTTAAAAGCTTCTCTAGCCTCGCATGGAATGTCAATGCCTAATAAGAAACCCGAGGACTCAAAAGGTGAGGAAACAACCAGTGAAGCCATGCCGGAGGAACCTCCTGAAGATATTAATCCAATGCCTTCACCCATTGAGGGAGCTGAAACTGCAGAGCGAACAACTCGAGAGAAAACCTTGAAGGATGCTGTGAAGCCCAAGAACAAGAGACCCAGGAAAAAGAAGGGCTCCTCTACTGGTCCAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000184 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016075 GO:0016078 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034473 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070478 GO:0070481 GO:0070651 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071035 GO:0071038 GO:0071042 GO:0071046 GO:0071047 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

460

Amino Acids

49.99

Weight (kDa)

5.59

Isoelectric Point (pI)

48.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_PH	PF01138	37 - 168	4.2e-29	3' exoribonuclease family, domain 1
RNase_PH_C	PF03725	197 - 263	5.3e-14	3' exoribonuclease family, domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12990 AT3G12990 AT3G12990 AT3G12990 AT3G60500 AT3G60500 AT3G60500 AT3G60500
fragaria_vesca	FvH4_1g30010 FvH4_1g30010
malus_domestica	MD03G1172100.v1.1 MD11G1189800.v1.1
prunus_persica	Prupe.4G254800_v2.0.a1 Prupe.4G254800_v2.0.a1 Prupe.4G254800_v2.0.a1
pyrus_communis	pycom03g12920
rosa_chinensis	RchiOBHm_Chr2g0134251 RchiOBHm_Chr3g0492251
rosa_laevigata	RLG00000022789
rosa_multiflora	Rmu_sc0000418.1_g000008 Rmu_sc0002530.1_g000013 Rmu_sc0003579.1_g000006
rosa_roxburghii	Rroxscaffold_6G00392470
rosa_rugosa	Rorug02G0315300 Rorug03G0252700
rosa_samantha	Rh2AG367900 Rh2BG374300 Rh2CG351900 Rh2DG391500 Rh3AG302700 Rh3BG338700 Rh3CG335800 Rh3DG337900
rosa_wichuraiana	Rw3G026700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	764
AccBSI	CCGCTC	1 cut(s)	65
AccII	CGCG	3 cut(s)	219, 327, 339
AclWI	GGATC	3 cut(s)	641, 1094, 1107
AcoI	YGGCCR	4 cut(s)	91, 183, 270, 322
AcuI	CTGAAG	2 cut(s)	604, 1257
AfaI	GTAC	1 cut(s)	546
AfiI	CCNNNNNNNGG	3 cut(s)	233, 1095, 1268
AgsI	TTSAA	2 cut(s)	728, 1312
AjnI	CCWGG	3 cut(s)	289, 298, 1343
AloI	GAACNNNNNNTCC	2 cut(s)	513, 545
AluBI	AGCT	9 cut(s)	163, 202, 319, 397, 479, 734, 1139, 1274, 1377
AluI	AGCT	9 cut(s)	163, 202, 319, 397, 479, 734, 1139, 1274, 1377
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	2 cut(s)	53, 1333
AlwI	GGATC	3 cut(s)	641, 1094, 1107
Ama87I	CYCGRG	2 cut(s)	1181, 1296
AoxI	GGCC	8 cut(s)	91, 183, 224, 270, 292, 322, 500, 1084
ApeKI	GCWGC	4 cut(s)	160, 458, 479, 928
ArsI	GACNNNNNNTTYG	2 cut(s)	266, 298
AseI	ATTAAT	2 cut(s)	699, 1245
Asp700I	GAANNNNTTC	3 cut(s)	50, 528, 784
AspLEI	GCGC	1 cut(s)	873
AspS9I	GGNCC	3 cut(s)	225, 1085, 1370
AsuHPI	GGTGA	5 cut(s)	112, 244, 652, 1208, 1251
AvaI	CYCGRG	2 cut(s)	1181, 1296
AvaII	GGWCC	1 cut(s)	1370
AxyI	CCTNAGG	1 cut(s)	555
BalI	TGGCCA	1 cut(s)	185
BamHI	GGATCC	1 cut(s)	1099
BanII	GRGCYC	3 cut(s)	149, 321, 1361
BarI	GAAGNNNNNNTAC	2 cut(s)	528, 560
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	4 cut(s)	172, 445, 466, 940
BccI	CCATC	4 cut(s)	131, 194, 254, 896
BceAI	ACGGC	3 cut(s)	106, 250, 296
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	3 cut(s)	291, 300, 1345
BclI	TGATCA	1 cut(s)	579
BcoDI	GTCTC	2 cut(s)	53, 1333
BfaI	CTAG	3 cut(s)	398, 1145, 1378
BfmI	CTRYAG	2 cut(s)	597, 1281
BfoI	RGCGCY	1 cut(s)	874
BglI	GCCNNNNNGGC	1 cut(s)	300
BisI	GCNGC	9 cut(s)	94, 97, 161, 295, 325, 459, 471, 480, 929
BlsI	GCNGC	9 cut(s)	95, 98, 162, 296, 326, 460, 472, 481, 930
Bme1390I	CCNGG	3 cut(s)	291, 300, 1345
Bme18I	GGWCC	1 cut(s)	1370
BmeT110I	CYCGRG	2 cut(s)	1181, 1296
BmgT120I	GGNCC	3 cut(s)	225, 1085, 1370
BmiI	GGNNCC	5 cut(s)	567, 1087, 1101, 1230, 1360
BmrFI	CCNGG	3 cut(s)	291, 300, 1345
BmsI	GCATC	5 cut(s)	32, 37, 445, 1054, 1306
BplI	GAGNNNNNCTC	2 cut(s)	553, 585
BpmI	CTGGAG	1 cut(s)	756
Bpu10I	CCTNAGC	1 cut(s)	344
BsaAI	YACGTR	1 cut(s)	178
BsaBI	GATNNNNATC	1 cut(s)	1245
BsaI	GGTCTC	2 cut(s)	53, 1333
BsaJI	CCNNGG	6 cut(s)	298, 337, 513, 891, 1182, 1343
BsaXI	ACNNNNNCTCC	4 cut(s)	513, 543, 576, 606
Bsc4I	CCNNNNNNNGG	3 cut(s)	233, 1095, 1268
Bse1I	ACTGG	2 cut(s)	1209, 1372
Bse21I	CCTNAGG	1 cut(s)	555
Bse3DI	GCAATG	2 cut(s)	465, 776
Bse8I	GATNNNNATC	1 cut(s)	1245
BseBI	CCWGG	3 cut(s)	291, 300, 1345
BseDI	CCNNGG	6 cut(s)	298, 337, 513, 891, 1182, 1343
BseGI	GGATG	2 cut(s)	901, 1321
BseJI	GATNNNNATC	1 cut(s)	1245
BseLI	CCNNNNNNNGG	3 cut(s)	233, 1095, 1268
BseMI	GCAATG	2 cut(s)	465, 776
BseMII	CTCAG	2 cut(s)	546, 969
BseNI	ACTGG	2 cut(s)	1209, 1372
BseRI	GAGGAG	2 cut(s)	572, 1351
BseX3I	CGGCCG	2 cut(s)	91, 322
BseXI	GCAGC	4 cut(s)	172, 445, 466, 940
BseYI	CCCAGC	2 cut(s)	163, 198
BsgI	GTGCAG	2 cut(s)	179, 947
Bsh1236I	CGCG	3 cut(s)	219, 327, 339
Bsh1285I	CGRYCG	3 cut(s)	94, 325, 337
BshFI	GGCC	8 cut(s)	93, 185, 226, 272, 294, 324, 502, 1086
BsiEI	CGRYCG	3 cut(s)	94, 325, 337
BsiHKAI	GWGCWC	1 cut(s)	321
BsiHKCI	CYCGRG	2 cut(s)	1181, 1296
BsiSI	CCGG	1 cut(s)	1223
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	3 cut(s)	233, 1095, 1268
BsmAI	GTCTC	2 cut(s)	53, 1333
BsmFI	GGGAC	1 cut(s)	180
BsmI	GAATGC	2 cut(s)	313, 614
BsnI	GGCC	8 cut(s)	93, 185, 226, 272, 294, 324, 502, 1086
Bso31I	GGTCTC	2 cut(s)	53, 1333
BsoBI	CYCGRG	2 cut(s)	1181, 1296
Bsp1286I	GDGCHC	3 cut(s)	149, 321, 1361
Bsp1407I	TGTACA	1 cut(s)	544
Bsp143I	GATC	6 cut(s)	418, 579, 646, 816, 864, 1099
Bsp19I	CCATGG	1 cut(s)	891
BspANI	GGCC	8 cut(s)	93, 185, 226, 272, 294, 324, 502, 1086
BspCNI	CTCAG	2 cut(s)	547, 970
BspFNI	CGCG	3 cut(s)	219, 327, 339
BspLI	GGNNCC	5 cut(s)	567, 1087, 1101, 1230, 1360
BspMAI	CTGCAG	1 cut(s)	1285
BspPI	GGATC	3 cut(s)	641, 1094, 1107
BspTNI	GGTCTC	2 cut(s)	53, 1333
BsrBI	CCGCTC	1 cut(s)	65
BsrDI	GCAATG	2 cut(s)	465, 776
BsrGI	TGTACA	1 cut(s)	544
BsrI	ACTGG	2 cut(s)	1209, 1372
BssECI	CCNNGG	6 cut(s)	298, 337, 513, 891, 1182, 1343
BssMI	GATC	6 cut(s)	418, 579, 646, 816, 864, 1099
BssT1I	CCWWGG	2 cut(s)	513, 891
Bst2UI	CCWGG	3 cut(s)	291, 300, 1345
Bst4CI	ACNGT	1 cut(s)	113
Bst6I	CTCTTC	3 cut(s)	576, 657, 943
BstAPI	GCANNNNNTGC	2 cut(s)	479, 775
BstAUI	TGTACA	1 cut(s)	544
BstBAI	YACGTR	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	341
BstDEI	CTNAG	3 cut(s)	344, 555, 978
BstDSI	CCRYGG	2 cut(s)	337, 891
BstEII	GGTNACC	1 cut(s)	443
BstF5I	GGATG	2 cut(s)	901, 1321
BstFNI	CGCG	3 cut(s)	219, 327, 339
BstH2I	RGCGCY	1 cut(s)	874
BstHHI	GCGC	1 cut(s)	873
BstKTI	GATC	6 cut(s)	421, 582, 649, 819, 867, 1102
BstMAI	GTCTC	2 cut(s)	53, 1333
BstMBI	GATC	6 cut(s)	418, 579, 646, 816, 864, 1099
BstMCI	CGRYCG	3 cut(s)	94, 325, 337
BstNI	CCWGG	3 cut(s)	291, 300, 1345
BstNSI	RCATGY	1 cut(s)	551
BstPI	GGTNACC	1 cut(s)	443
BstSCI	CCNGG	3 cut(s)	289, 298, 1343
BstSFI	CTRYAG	2 cut(s)	597, 1281
BstUI	CGCG	3 cut(s)	219, 327, 339
BstV1I	GCAGC	4 cut(s)	172, 445, 466, 940
BstX2I	RGATCY	2 cut(s)	646, 1099
BstYI	RGATCY	2 cut(s)	646, 1099
BstZI	CGGCCG	2 cut(s)	91, 322
Bsu36I	CCTNAGG	1 cut(s)	555
BsuRI	GGCC	8 cut(s)	93, 185, 226, 272, 294, 324, 502, 1086
BtgI	CCRYGG	2 cut(s)	337, 891
BtgZI	GCGATG	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	901, 1321
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	2 cut(s)	192, 1216
Cac8I	GCNNGC	1 cut(s)	341
CfoI	GCGC	1 cut(s)	873
Cfr13I	GGNCC	3 cut(s)	225, 1085, 1370
Cfr42I	CCGCGG	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	545
CviAII	CATG	5 cut(s)	548, 656, 892, 1154, 1219
CviQI	GTAC	1 cut(s)	545
DdeI	CTNAG	3 cut(s)	344, 555, 978
DpnI	GATC	6 cut(s)	420, 581, 648, 818, 866, 1101
DpnII	GATC	6 cut(s)	418, 579, 646, 816, 864, 1099
DraI	TTTAAA	1 cut(s)	1134
EaeI	YGGCCR	4 cut(s)	91, 183, 270, 322
EagI	CGGCCG	2 cut(s)	91, 322
Eam1104I	CTCTTC	3 cut(s)	576, 657, 943
EarI	CTCTTC	3 cut(s)	576, 657, 943
Ecl136II	GAGCTC	1 cut(s)	319
EclXI	CGGCCG	2 cut(s)	91, 322
Eco130I	CCWWGG	2 cut(s)	513, 891
Eco147I	AGGCCT	1 cut(s)	502
Eco24I	GRGCYC	3 cut(s)	149, 321, 1361
Eco31I	GGTCTC	2 cut(s)	53, 1333
Eco47I	GGWCC	1 cut(s)	1370
Eco52I	CGGCCG	2 cut(s)	91, 322
Eco53kI	GAGCTC	1 cut(s)	319
Eco57I	CTGAAG	2 cut(s)	604, 1257
Eco81I	CCTNAGG	1 cut(s)	555
Eco88I	CYCGRG	2 cut(s)	1181, 1296
Eco91I	GGTNACC	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	319
EcoO109I	RGGNCCY	1 cut(s)	1085
EcoO65I	GGTNACC	1 cut(s)	443
EcoRII	CCWGG	3 cut(s)	289, 298, 1343
EcoT14I	CCWWGG	2 cut(s)	513, 891
EcoT38I	GRGCYC	3 cut(s)	149, 321, 1361
ErhI	CCWWGG	2 cut(s)	513, 891
FaeI	CATG	5 cut(s)	551, 659, 895, 1157, 1222
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	5 cut(s)	547, 655, 891, 1153, 1218
FauI	CCCGC	1 cut(s)	332
FauNDI	CATATG	1 cut(s)	954
FbaI	TGATCA	1 cut(s)	579
Fnu4HI	GCNGC	9 cut(s)	94, 97, 161, 295, 325, 459, 471, 480, 929
FokI	GGATG	2 cut(s)	908, 1328
FriOI	GRGCYC	3 cut(s)	149, 321, 1361
Fsp4HI	GCNGC	9 cut(s)	94, 97, 161, 295, 325, 459, 471, 480, 929
FspBI	CTAG	3 cut(s)	398, 1145, 1378
GlaI	GCGC	1 cut(s)	872
GluI	GCNGC	9 cut(s)	94, 97, 161, 295, 325, 459, 471, 480, 929
GsaI	CCCAGC	2 cut(s)	167, 202
GsuI	CTGGAG	1 cut(s)	756
HaeII	RGCGCY	1 cut(s)	874
HaeIII	GGCC	8 cut(s)	93, 185, 226, 272, 294, 324, 502, 1086
HapII	CCGG	1 cut(s)	1223
HhaI	GCGC	1 cut(s)	873
Hin1II	CATG	5 cut(s)	551, 659, 895, 1157, 1222
Hin6I	GCGC	1 cut(s)	871
HinP1I	GCGC	1 cut(s)	871
HincII	GTYRAC	1 cut(s)	489
HindII	GTYRAC	1 cut(s)	489
HindIII	AAGCTT	1 cut(s)	1137
HinfI	GANTC	4 cut(s)	371, 833, 1121, 1187
HpaII	CCGG	1 cut(s)	1223
HphI	GGTGA	5 cut(s)	112, 244, 652, 1208, 1251
Hpy166II	GTNNAC	1 cut(s)	489
Hpy188I	TCNGA	6 cut(s)	83, 498, 579, 979, 1033, 1126
Hpy188III	TCNNGA	5 cut(s)	58, 533, 820, 1235, 1298
Hpy8I	GTNNAC	1 cut(s)	489
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	7 cut(s)	112, 817, 977, 1063, 1266, 1306, 1348
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4IV	ACGT	2 cut(s)	177, 491
HpyF3I	CTNAG	3 cut(s)	344, 555, 978
HpySE526I	ACGT	2 cut(s)	177, 491
Hsp92II	CATG	5 cut(s)	551, 659, 895, 1157, 1222
HspAI	GCGC	1 cut(s)	871
Ksp22I	TGATCA	1 cut(s)	579
KspI	CCGCGG	1 cut(s)	340
Kzo9I	GATC	6 cut(s)	418, 579, 646, 816, 864, 1099
LmnI	GCTCC	4 cut(s)	4, 565, 1271, 1364
Lsp1109I	GCAGC	4 cut(s)	172, 445, 466, 940
LweI	GCATC	5 cut(s)	32, 37, 445, 1054, 1306
MaeI	CTAG	3 cut(s)	398, 1145, 1378
MaeII	ACGT	2 cut(s)	177, 491
MaeIII	GTNAC	4 cut(s)	113, 190, 443, 604
MalI	GATC	6 cut(s)	420, 581, 648, 818, 866, 1101
MbiI	CCGCTC	1 cut(s)	65
MboI	GATC	6 cut(s)	418, 579, 646, 816, 864, 1099
MflI	RGATCY	2 cut(s)	646, 1099
MhlI	GDGCHC	3 cut(s)	149, 321, 1361
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	4 cut(s)	696, 780, 1025, 1092
MluNI	TGGCCA	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	1181
MmeI	TCCRAC	1 cut(s)	674
Mox20I	TGGCCA	1 cut(s)	185
MroXI	GAANNNNTTC	3 cut(s)	50, 528, 784
MscI	TGGCCA	1 cut(s)	185
MseI	TTAA	4 cut(s)	699, 948, 1133, 1245
MslI	CAYNNNNRTG	1 cut(s)	921
Msp20I	TGGCCA	1 cut(s)	185
MspA1I	CMGCKG	2 cut(s)	163, 339
MspI	CCGG	1 cut(s)	1223
MspR9I	CCNGG	3 cut(s)	291, 300, 1345
Mva1269I	GAATGC	2 cut(s)	313, 614
MvaI	CCWGG	3 cut(s)	291, 300, 1345
MvnI	CGCG	3 cut(s)	219, 327, 339
NcoI	CCATGG	1 cut(s)	891
NdeI	CATATG	1 cut(s)	954
NdeII	GATC	6 cut(s)	418, 579, 646, 816, 864, 1099
NlaIII	CATG	5 cut(s)	551, 659, 895, 1157, 1222
NlaIV	GGNNCC	5 cut(s)	567, 1087, 1101, 1230, 1360
NmeAIII	GCCGAG	1 cut(s)	300
NmuCI	GTSAC	1 cut(s)	190
NspI	RCATGY	1 cut(s)	551
PaeR7I	CTCGAG	1 cut(s)	1296
PceI	AGGCCT	1 cut(s)	502
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PctI	GAATGC	2 cut(s)	313, 614
PdmI	GAANNNNTTC	3 cut(s)	50, 528, 784
PfeI	GAWTC	3 cut(s)	371, 833, 1121
PkrI	GCNGC	9 cut(s)	95, 98, 162, 296, 326, 460, 472, 481, 930
PleI	GAGTC	1 cut(s)	1181
PpsI	GAGTC	1 cut(s)	1181
Ppu21I	YACGTR	1 cut(s)	178
PshBI	ATTAAT	2 cut(s)	699, 1245
PsiI	TTATAA	1 cut(s)	764
Psp124BI	GAGCTC	1 cut(s)	321
Psp6I	CCWGG	3 cut(s)	289, 298, 1343
PspEI	GGTNACC	1 cut(s)	443
PspFI	CCCAGC	2 cut(s)	163, 198
PspGI	CCWGG	3 cut(s)	289, 298, 1343
PspN4I	GGNNCC	5 cut(s)	567, 1087, 1101, 1230, 1360
PspPI	GGNCC	3 cut(s)	225, 1085, 1370
PstI	CTGCAG	1 cut(s)	1285
PsuI	RGATCY	2 cut(s)	646, 1099
PvuII	CAGCTG	1 cut(s)	163
RsaI	GTAC	1 cut(s)	546
RsaNI	GTAC	1 cut(s)	545
RseI	CAYNNNNRTG	1 cut(s)	921
SacI	GAGCTC	1 cut(s)	321
SacII	CCGCGG	1 cut(s)	340
SaqAI	TTAA	4 cut(s)	699, 948, 1133, 1245
SatI	GCNGC	9 cut(s)	94, 97, 161, 295, 325, 459, 471, 480, 929
Sau3AI	GATC	6 cut(s)	418, 579, 646, 816, 864, 1099
Sau96I	GGNCC	3 cut(s)	225, 1085, 1370
SchI	GAGTC	1 cut(s)	1181
ScrFI	CCNGG	3 cut(s)	291, 300, 1345
SduI	GDGCHC	3 cut(s)	149, 321, 1361
SfaNI	GCATC	5 cut(s)	32, 37, 445, 1054, 1306
SfcI	CTRYAG	2 cut(s)	597, 1281
Sfr274I	CTCGAG	1 cut(s)	1296
Sfr303I	CCGCGG	1 cut(s)	340
SgrBI	CCGCGG	1 cut(s)	340
SinI	GGWCC	1 cut(s)	1370
SlaI	CTCGAG	1 cut(s)	1296
SmiMI	CAYNNNNRTG	1 cut(s)	921
SmlI	CTYRAG	1 cut(s)	1296
SmoI	CTYRAG	1 cut(s)	1296
Sse9I	AATT	4 cut(s)	696, 780, 1025, 1092
SseBI	AGGCCT	1 cut(s)	502
SspMI	CTAG	3 cut(s)	398, 1145, 1378
SstI	GAGCTC	1 cut(s)	321
StuI	AGGCCT	1 cut(s)	502
StyD4I	CCNGG	3 cut(s)	289, 298, 1343
StyI	CCWWGG	2 cut(s)	513, 891
TaaI	ACNGT	1 cut(s)	113
TaiI	ACGT	2 cut(s)	180, 494
TaqI	TCGA	6 cut(s)	57, 105, 315, 333, 355, 1297
TasI	AATT	4 cut(s)	696, 780, 1025, 1092
TatI	WGTACW	1 cut(s)	544
TauI	GCSGC	5 cut(s)	96, 99, 297, 327, 473
TfiI	GAWTC	3 cut(s)	371, 833, 1121
Tru1I	TTAA	4 cut(s)	699, 948, 1133, 1245
Tru9I	TTAA	4 cut(s)	699, 948, 1133, 1245
TscAI	CASTG	2 cut(s)	199, 1216
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	4 cut(s)	160, 458, 479, 928
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	4 cut(s)	43, 563, 825, 1074
TspGWI	ACGGA	2 cut(s)	401, 874
TspRI	CASTG	2 cut(s)	199, 1216
VpaK11BI	GGWCC	1 cut(s)	1370
VspI	ATTAAT	2 cut(s)	699, 1245
XceI	RCATGY	1 cut(s)	551
XhoI	CTCGAG	1 cut(s)	1296
XmnI	GAANNNNTTC	3 cut(s)	50, 528, 784
XspI	CTAG	3 cut(s)	398, 1145, 1378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.