Rorug02G0315300

Exosome complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003830
Physical Location & Seq
Reverse (-)
38329336 .. 38330589
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0315300.1

Sequence Viewer

Length: 1254 bp
ATGCCTTCTGTTCTGGTGGGTTTCAGGTTCCGCCCAACTGATGAAGAACTGATCAGTTATTTCCTCTACAACAAGAACAATGTCGGCACAATGGCAGAAGTGCCATCAATGGCTGCATACAATTACAACAAAATTATGCCCGAGCTTGACCTTTATGGTGATGTAGAACCATGGCAGATTTGGGAAACGTATGGGGGATCGGAACTGTATGACCAGGATATGTTCTTTTTTACACAGCACAAGACGGTAAACCCCGATGGTTTACGCATTCATCGCAAGGTTGGATCTGGTGGTACTTGGAGTGAAGGAGAACCTGGCAAACTTATTTTTGATCCAAAGCATAAGCAGAAACCTATTGGACAGAAAAGGAAATTTCGATATGAGAATAAAGGGTCTGACCACAATGGTTCTTGGTATTTGGAAGAGTATAGTCTTCTTCTTACTAACTCTGCAAATTATGTACTTTGTCGGCTCCGACAGAACATCAAGACACGAAAGAAGAGGAAGGAGATATTATTGTGCCAAGAATCTAGTGCATTGCCAATGAGTTACATACCTGTAGGGTTCAGGTTCCACCCCACGGATCAAGAGTTGATCAGTTACTTCCTCTACAACAAGCTGACAGAGGAAGCATCATTATACAGTTACAAAAACATTGTGTGCGAGTTTGATCTTTTTGGAACCACAGAACCTTGGGAGATTTGGGACATGTATGGGGGACATGAGTTGTGCAACCAAAACTTGTTCTTTTTCACAAAGCTCAAGAAGGCGAGCCTCAACGGCTCACGCATTCTCCGCAAGATTGGATCAAGTGGGACTTGGAGCGAAACAGATGCCTCCAAGTTGATTAAAGATGAGGAATTGCAAAAACATATTGGGCGGAGGAGGAAACTGCGATACGAGAGCAAATGTTCCAAACACCACGGTCATTGGTATTTGGATGAGTATAGTCTTCTAGATGCTAAATCAGATTATGTGATTTGTAGACTGCGAAAGAACAACAAATCACCACTGCCATTGTCTGAATGGAATGGAAACAAGAGAAAGTACAGTGCATTATGCCAAGAATCAAAGGAGAAGCAGAAGCTGCTTTCTGTTACTAACAAAAAGCTAATGCGAAAGCAAAGTAATGTGATGATGAATATAACCAACAACAAGAACAACTTGTCTGACCAGCCAATAGATCAGACAAAGAGGACGGAACCTTGCACGAAATTCAAATTATTTGGCGTAGAGATAGGTTCTAACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000184 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016075 GO:0016078 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034473 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070478 GO:0070481 GO:0070651 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071035 GO:0071038 GO:0071042 GO:0071046 GO:0071047 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

417

Amino Acids

48.83

Weight (kDa)

9.21

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 6 - 145 1.9e-20 No apical meristem (NAM) protein
NAM PF02365 186 - 318 2e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 985
AciI CCGC 3 cut(s) 31, 796, 880
AclWI GGATC 5 cut(s) 205, 292, 326, 591, 814
AcsI RAATTY 2 cut(s) 371, 1214
AfaI GTAC 3 cut(s) 295, 462, 1049
AfiI CCNNNNNNNGG 1 cut(s) 580
AflIII ACRYGT 1 cut(s) 708
AgsI TTSAA 1 cut(s) 1219
AjnI CCWGG 2 cut(s) 213, 313
AluBI AGCT 5 cut(s) 145, 619, 760, 1087, 1111
AluI AGCT 5 cut(s) 145, 619, 760, 1087, 1111
AlwI GGATC 5 cut(s) 205, 292, 326, 591, 814
AlwNI CAGNNNCTG 1 cut(s) 1087
Ama87I CYCGRG 1 cut(s) 140
ApeKI GCWGC 2 cut(s) 113, 1087
ApoI RAATTY 2 cut(s) 371, 1214
AsuHPI GGTGA 2 cut(s) 170, 999
AvaI CYCGRG 1 cut(s) 140
BbsI GAAGAC 2 cut(s) 425, 944
BbvI GCAGC 2 cut(s) 100, 1074
BccI CCATC 2 cut(s) 112, 251
BceAI ACGGC 1 cut(s) 796
BcgI CGANNNNNNTGC 2 cut(s) 815, 849
BciT130I CCWGG 2 cut(s) 215, 315
BclI TGATCA 2 cut(s) 51, 594
BfaI CTAG 2 cut(s) 531, 956
BfmI CTRYAG 1 cut(s) 558
BglI GCCNNNNNGGC 1 cut(s) 780
BisI GCNGC 2 cut(s) 114, 1088
BlsI GCNGC 2 cut(s) 115, 1089
Bme1390I CCNGG 2 cut(s) 215, 315
BmeT110I CYCGRG 1 cut(s) 140
BmiI GGNNCC 5 cut(s) 29, 473, 572, 682, 1203
BmrFI CCNGG 2 cut(s) 215, 315
BmsI GCATC 3 cut(s) 641, 823, 949
BpiI GAAGAC 2 cut(s) 425, 944
BpuEI CTTGAG 1 cut(s) 746
BsaJI CCNNGG 4 cut(s) 170, 579, 692, 922
BsaXI ACNNNNNCTCC 2 cut(s) 777, 807
Bsc4I CCNNNNNNNGG 1 cut(s) 580
Bse3DI GCAATG 1 cut(s) 536
BseBI CCWGG 2 cut(s) 215, 315
BseDI CCNNGG 4 cut(s) 170, 579, 692, 922
BseGI GGATG 1 cut(s) 946
BseLI CCNNNNNNNGG 1 cut(s) 580
BseMI GCAATG 1 cut(s) 536
BseRI GAGGAG 1 cut(s) 898
BseXI GCAGC 2 cut(s) 100, 1074
BsiHKCI CYCGRG 1 cut(s) 140
BslFI GGGAC 3 cut(s) 719, 732, 829
BslI CCNNNNNNNGG 1 cut(s) 580
BsmFI GGGAC 3 cut(s) 719, 732, 829
BsmI GAATGC 2 cut(s) 267, 789
BsoBI CYCGRG 1 cut(s) 140
Bsp143I GATC 9 cut(s) 51, 197, 284, 331, 583, 594, 670, 806, 1183
Bsp19I CCATGG 1 cut(s) 170
BspACI CCGC 3 cut(s) 31, 796, 880
BspLI GGNNCC 5 cut(s) 29, 473, 572, 682, 1203
BspPI GGATC 5 cut(s) 205, 292, 326, 591, 814
BsrDI GCAATG 1 cut(s) 536
BssECI CCNNGG 4 cut(s) 170, 579, 692, 922
BssMI GATC 9 cut(s) 51, 197, 284, 331, 583, 594, 670, 806, 1183
BssT1I CCWWGG 2 cut(s) 170, 692
Bst2UI CCWGG 2 cut(s) 215, 315
Bst4CI ACNGT 5 cut(s) 207, 247, 644, 926, 1052
Bst6I CTCTTC 2 cut(s) 417, 494
BstAPI GCANNNNNTGC 1 cut(s) 1087
BstC8I GCNNGC 1 cut(s) 772
BstDSI CCRYGG 3 cut(s) 170, 579, 922
BstF5I GGATG 1 cut(s) 946
BstKTI GATC 9 cut(s) 54, 200, 287, 334, 586, 597, 673, 809, 1186
BstMBI GATC 9 cut(s) 51, 197, 284, 331, 583, 594, 670, 806, 1183
BstMWI GCNNNNNNNGC 4 cut(s) 273, 780, 795, 1087
BstNI CCWGG 2 cut(s) 215, 315
BstNSI RCATGY 1 cut(s) 712
BstSCI CCNGG 2 cut(s) 213, 313
BstSFI CTRYAG 1 cut(s) 558
BstV1I GCAGC 2 cut(s) 100, 1074
BstV2I GAAGAC 2 cut(s) 425, 944
BstX2I RGATCY 1 cut(s) 284
BstYI RGATCY 1 cut(s) 284
BtgI CCRYGG 3 cut(s) 170, 579, 922
BtgZI GCGATG 1 cut(s) 257
BtsCI GGATG 1 cut(s) 946
BtsI GCAGTG 1 cut(s) 1010
BtsIMutI CAGTG 2 cut(s) 1010, 1057
Cac8I GCNNGC 1 cut(s) 772
CaiI CAGNNNCTG 1 cut(s) 1087
Csp6I GTAC 3 cut(s) 294, 461, 1048
CspCI CAANNNNNGTGG 4 cut(s) 911, 946, 999, 1034
CviAII CATG 3 cut(s) 171, 709, 722
CviQI GTAC 3 cut(s) 294, 461, 1048
DpnI GATC 9 cut(s) 53, 199, 286, 333, 585, 596, 672, 808, 1185
DpnII GATC 9 cut(s) 51, 197, 284, 331, 583, 594, 670, 806, 1183
Eam1104I CTCTTC 2 cut(s) 417, 494
EarI CTCTTC 2 cut(s) 417, 494
EciI GGCGGA 2 cut(s) 20, 895
Eco130I CCWWGG 2 cut(s) 170, 692
Eco88I CYCGRG 1 cut(s) 140
EcoRII CCWGG 2 cut(s) 213, 313
EcoT14I CCWWGG 2 cut(s) 170, 692
ErhI CCWWGG 2 cut(s) 170, 692
FaeI CATG 3 cut(s) 174, 712, 725
FalI AAGNNNNNCTT 4 cut(s) 802, 834, 1148, 1180
FaqI GGGAC 3 cut(s) 719, 732, 829
FatI CATG 3 cut(s) 170, 708, 721
FbaI TGATCA 2 cut(s) 51, 594
FblI GTMKAC 1 cut(s) 985
Fnu4HI GCNGC 2 cut(s) 114, 1088
FokI GGATG 1 cut(s) 953
Fsp4HI GCNGC 2 cut(s) 114, 1088
FspBI CTAG 2 cut(s) 531, 956
GluI GCNGC 2 cut(s) 114, 1088
Hin1II CATG 3 cut(s) 174, 712, 725
HinfI GANTC 2 cut(s) 527, 1067
HphI GGTGA 2 cut(s) 170, 999
Hpy166II GTNNAC 3 cut(s) 250, 263, 986
Hpy188I TCNGA 7 cut(s) 202, 397, 476, 970, 1024, 1171, 1188
Hpy188III TCNNGA 4 cut(s) 487, 587, 763, 956
Hpy8I GTNNAC 3 cut(s) 250, 263, 986
HpyAV CCTTC 4 cut(s) 15, 299, 499, 760
HpyCH4III ACNGT 5 cut(s) 207, 247, 644, 926, 1052
HpyCH4IV ACGT 1 cut(s) 188
HpyCH4V TGCA 7 cut(s) 116, 452, 536, 732, 865, 1055, 1209
HpyF10VI GCNNNNNNNGC 4 cut(s) 273, 780, 795, 1087
HpySE526I ACGT 1 cut(s) 188
Hsp92II CATG 3 cut(s) 174, 712, 725
Ksp22I TGATCA 2 cut(s) 51, 594
Kzo9I GATC 9 cut(s) 51, 197, 284, 331, 583, 594, 670, 806, 1183
LmnI GCTCC 2 cut(s) 477, 822
LpnPI CCDG 9 cut(s) 10, 200, 227, 273, 300, 327, 553, 570, 1187
Lsp1109I GCAGC 2 cut(s) 100, 1074
LweI GCATC 3 cut(s) 641, 823, 949
MaeI CTAG 2 cut(s) 531, 956
MaeII ACGT 1 cut(s) 188
MaeIII GTNAC 4 cut(s) 548, 599, 644, 1096
MalI GATC 9 cut(s) 53, 199, 286, 333, 585, 596, 672, 808, 1185
MboI GATC 9 cut(s) 51, 197, 284, 331, 583, 594, 670, 806, 1183
MboII GAAGA 6 cut(s) 56, 425, 428, 434, 511, 944
MflI RGATCY 1 cut(s) 284
MluCI AATT 7 cut(s) 121, 132, 371, 454, 860, 1214, 1220
MmeI TCCRAC 2 cut(s) 262, 499
MseI TTAA 1 cut(s) 849
MspR9I CCNGG 2 cut(s) 215, 315
Mva1269I GAATGC 2 cut(s) 267, 789
MvaI CCWGG 2 cut(s) 215, 315
MwoI GCNNNNNNNGC 4 cut(s) 273, 780, 795, 1087
NcoI CCATGG 1 cut(s) 170
NdeII GATC 9 cut(s) 51, 197, 284, 331, 583, 594, 670, 806, 1183
NlaIII CATG 3 cut(s) 174, 712, 725
NlaIV GGNNCC 5 cut(s) 29, 473, 572, 682, 1203
NspI RCATGY 1 cut(s) 712
PciI ACATGT 1 cut(s) 708
PctI GAATGC 2 cut(s) 267, 789
PfeI GAWTC 2 cut(s) 527, 1067
PkrI GCNGC 2 cut(s) 115, 1089
PscI ACATGT 1 cut(s) 708
Psp6I CCWGG 2 cut(s) 213, 313
PspGI CCWGG 2 cut(s) 213, 313
PspN4I GGNNCC 5 cut(s) 29, 473, 572, 682, 1203
PstNI CAGNNNCTG 1 cut(s) 1087
PsuI RGATCY 1 cut(s) 284
RsaI GTAC 3 cut(s) 295, 462, 1049
RsaNI GTAC 3 cut(s) 294, 461, 1048
SaqAI TTAA 1 cut(s) 849
SatI GCNGC 2 cut(s) 114, 1088
Sau3AI GATC 9 cut(s) 51, 197, 284, 331, 583, 594, 670, 806, 1183
ScrFI CCNGG 2 cut(s) 215, 315
SfaNI GCATC 3 cut(s) 641, 823, 949
SfcI CTRYAG 1 cut(s) 558
SmlI CTYRAG 1 cut(s) 761
SmoI CTYRAG 1 cut(s) 761
Sse9I AATT 7 cut(s) 121, 132, 371, 454, 860, 1214, 1220
SsiI CCGC 3 cut(s) 31, 796, 880
SspMI CTAG 2 cut(s) 531, 956
StyD4I CCNGG 2 cut(s) 213, 313
StyI CCWWGG 2 cut(s) 170, 692
TaaI ACNGT 5 cut(s) 207, 247, 644, 926, 1052
TaiI ACGT 1 cut(s) 191
TaqI TCGA 1 cut(s) 376
TasI AATT 7 cut(s) 121, 132, 371, 454, 860, 1214, 1220
TatI WGTACW 2 cut(s) 460, 1047
TfiI GAWTC 2 cut(s) 527, 1067
Tru1I TTAA 1 cut(s) 849
Tru9I TTAA 1 cut(s) 849
TscAI CASTG 2 cut(s) 1017, 1057
TseI GCWGC 2 cut(s) 113, 1087
TspDTI ATGAA 3 cut(s) 57, 260, 1154
TspGWI ACGGA 2 cut(s) 596, 1214
TspRI CASTG 2 cut(s) 1017, 1057
XapI RAATTY 2 cut(s) 371, 1214
XbaI TCTAGA 1 cut(s) 955
XceI RCATGY 1 cut(s) 712
XcmI CCANNNNNNNNNTGG 2 cut(s) 177, 1023
XmiI GTMKAC 1 cut(s) 985
XspI CTAG 2 cut(s) 531, 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.