Rmu_sc0000418.1_g000008

60S ribosomal Protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000418.1
Physical Location & Seq
Forward (+)
54005 .. 58398
4394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000418.1_g000008.1.cds

Sequence Viewer

Length: 1242 bp
atgctagacttccagggcttcaaaataggagtcgaattaattagggttagggatttgtgtcgattttcaagaggcttcatgattttggtcgcgattcaggttgagatgacttttcgtattggattcgatcattggagatatggatgtgggttccatctgaccgagttctctcacatggccgacccttcctttgagcttggctgccctggcgaggagagcagggcagttgatacagagtcgctttgtattctttctagcaagttggtgtgggctatacgtgttgacctccgcattctagataatggagggaatcttattgatgctactaatattgttgcactggctggtttgttgacgttctggaggcctgagtgctcattaggagaagaaaatggtcagggaatcatcatatgtccacccgaggatgctattttgaatgaagatgaaggcctgaaactaaaaaggagaagaattccaccagctctcaacctattcacaaagacaattgataagaacctcgcaacaagcccgttcaagatgcttctgaagtacaggcctaaagacaaagcagagaagaaggagcgtctattgaaaagggctcaggcagagactgaaggaaagactaacaaggcccaacttgtggttaccgctcatgatgtcaatccaattgagttggttgtatggctccctgctttatgcagaaagatggagatcccctattgcattgtgaagggcaaagcacgtttgctgcctctttattatcggctgcccatgccgcttcttcctctcaatctttccgattccctaaagtccaaagctttcctttctctcctcctcctccccaaacccaaatcttctgttcctcgctacaagccttacccactctccctcagctctccacatgaacgctcccacatcggaacagaagccctcctttcaggtctcactgcaattctcacacccttctttgttttctattcattctttgatggctcaccttgtcgacctcgtcattctctaaaactttcgaaccctacatccttcttcagcagctcacctcgtcgacctcaccttgtcaacctcatcattctccaagccgcctccgacatgaccccgagtccccgacgtcagtctctgaccccatgttcccctgcctcgctctttgaccccgagtccccgatctcgttctccagacctctagacctcgagcttgatctatcatcatctgcactcccagtctga

Protein Analysis

413

Amino Acids

46.33

Weight (kDa)

9.09

Isoelectric Point (pI)

53.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1129
AccB7I CCANNNNNTGG 1 cut(s) 640
AccBSI CCGCTC 1 cut(s) 650
AccI GTMKAC 2 cut(s) 1003, 1063
AccII CGCG 1 cut(s) 92
AciI CCGC 4 cut(s) 289, 648, 776, 1098
AclWI GGATC 1 cut(s) 706
AcoI YGGCCR 1 cut(s) 177
AcsI RAATTY 1 cut(s) 471
AcuI CTGAAG 3 cut(s) 566, 633, 1030
AcyI GRCGYC 1 cut(s) 1126
AfaI GTAC 1 cut(s) 551
AfiI CCNNNNNNNGG 2 cut(s) 211, 640
AflIII ACRYGT 1 cut(s) 277
AgsI TTSAA 5 cut(s) 22, 69, 436, 535, 592
AhdI GACNNNNNGTC 2 cut(s) 1116, 1171
AjnI CCWGG 2 cut(s) 12, 205
AloI GAACNNNNNNTCC 2 cut(s) 1022, 1054
AluBI AGCT 6 cut(s) 196, 482, 818, 894, 1053, 1210
AluI AGCT 6 cut(s) 196, 482, 818, 894, 1053, 1210
Alw21I GWGCWC 1 cut(s) 377
Alw26I GTCTC 3 cut(s) 602, 947, 1137
AlwI GGATC 1 cut(s) 706
AlwNI CAGNNNCTG 2 cut(s) 611, 1135
Ama87I CYCGRG 4 cut(s) 419, 1114, 1169, 1205
AoxI GGCC 5 cut(s) 177, 365, 448, 554, 630
ApeKI GCWGC 4 cut(s) 201, 748, 766, 1050
ApoI RAATTY 1 cut(s) 471
ArsI GACNNNNNNTTYG 4 cut(s) 15, 47, 173, 205
AseI ATTAAT 1 cut(s) 38
AspS9I GGNCC 1 cut(s) 631
AsuHPI GGTGA 3 cut(s) 987, 1047, 1061
AsuII TTCGAA 1 cut(s) 1028
AvaI CYCGRG 4 cut(s) 419, 1114, 1169, 1205
BanII GRGCYC 1 cut(s) 601
Bbv12I GWGCWC 1 cut(s) 377
BbvCI CCTCAGC 1 cut(s) 890
BbvI GCAGC 4 cut(s) 188, 735, 753, 1062
BccI CCATC 3 cut(s) 162, 700, 983
BciT130I CCWGG 2 cut(s) 14, 207
BcoDI GTCTC 3 cut(s) 602, 947, 1137
BfaI CTAG 4 cut(s) 5, 255, 296, 1199
BisI GCNGC 6 cut(s) 202, 749, 767, 776, 1051, 1098
BlsI GCNGC 6 cut(s) 203, 750, 768, 777, 1052, 1099
Bme1390I CCNGG 2 cut(s) 14, 207
BmeRI GACNNNNNGTC 2 cut(s) 1116, 1171
BmeT110I CYCGRG 4 cut(s) 419, 1114, 1169, 1205
BmgT120I GGNCC 1 cut(s) 631
BmiI GGNNCC 2 cut(s) 152, 686
BmrFI CCNGG 2 cut(s) 14, 207
BmrI ACTGGG 1 cut(s) 1229
BmsI GCATC 3 cut(s) 310, 415, 528
BmuI ACTGGG 1 cut(s) 1229
BoxI GACNNNNGTC 1 cut(s) 1129
BpmI CTGGAG 2 cut(s) 382, 1174
Bpu10I CCTNAGC 2 cut(s) 600, 890
Bpu14I TTCGAA 1 cut(s) 1028
BsaAI YACGTR 1 cut(s) 278
BsaBI GATNNNNATC 2 cut(s) 660, 710
BsaHI GRCGYC 1 cut(s) 1126
BsaI GGTCTC 1 cut(s) 947
BsaJI CCNNGG 3 cut(s) 13, 205, 420
BsaXI ACNNNNNCTCC 2 cut(s) 869, 899
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 640
Bse1I ACTGG 2 cut(s) 345, 1235
Bse8I GATNNNNATC 2 cut(s) 660, 710
BseBI CCWGG 2 cut(s) 14, 207
BseDI CCNNGG 3 cut(s) 13, 205, 420
BseGI GGATG 3 cut(s) 149, 430, 1037
BseJI GATNNNNATC 2 cut(s) 660, 710
BseLI CCNNNNNNNGG 2 cut(s) 211, 640
BseMII CTCAG 3 cut(s) 360, 614, 904
BseNI ACTGG 2 cut(s) 345, 1235
BseRI GAGGAG 4 cut(s) 227, 821, 824, 827
BseXI GCAGC 4 cut(s) 188, 735, 753, 1062
BsgI GTGCAG 1 cut(s) 1212
Bsh1236I CGCG 1 cut(s) 92
BshFI GGCC 5 cut(s) 179, 367, 450, 556, 632
BsiHKAI GWGCWC 1 cut(s) 377
BsiHKCI CYCGRG 4 cut(s) 419, 1114, 1169, 1205
BslFI GGGAC 2 cut(s) 1104, 1159
BslI CCNNNNNNNGG 2 cut(s) 211, 640
BsmAI GTCTC 3 cut(s) 602, 947, 1137
BsmFI GGGAC 2 cut(s) 1104, 1159
BsmI GAATGC 1 cut(s) 291
BsnI GGCC 5 cut(s) 179, 367, 450, 556, 632
Bso31I GGTCTC 1 cut(s) 947
BsoBI CYCGRG 4 cut(s) 419, 1114, 1169, 1205
Bsp119I TTCGAA 1 cut(s) 1028
Bsp1286I GDGCHC 2 cut(s) 377, 601
Bsp143I GATC 4 cut(s) 127, 711, 1179, 1213
Bsp68I TCGCGA 1 cut(s) 92
BspACI CCGC 4 cut(s) 289, 648, 776, 1098
BspANI GGCC 5 cut(s) 179, 367, 450, 556, 632
BspCNI CTCAG 3 cut(s) 361, 613, 903
BspFNI CGCG 1 cut(s) 92
BspHI TCATGA 2 cut(s) 78, 652
BspLI GGNNCC 2 cut(s) 152, 686
BspPI GGATC 1 cut(s) 706
BspT104I TTCGAA 1 cut(s) 1028
BspTNI GGTCTC 1 cut(s) 947
BsrBI CCGCTC 1 cut(s) 650
BsrI ACTGG 2 cut(s) 345, 1235
BssECI CCNNGG 3 cut(s) 13, 205, 420
BssMI GATC 4 cut(s) 127, 711, 1179, 1213
BssNI GRCGYC 1 cut(s) 1126
Bst2UI CCWGG 2 cut(s) 14, 207
BstACI GRCGYC 1 cut(s) 1126
BstBAI YACGTR 1 cut(s) 278
BstBI TTCGAA 1 cut(s) 1028
BstDEI CTNAG 3 cut(s) 369, 600, 890
BstEII GGTNACC 1 cut(s) 643
BstF5I GGATG 3 cut(s) 149, 430, 1037
BstFNI CGCG 1 cut(s) 92
BstKTI GATC 4 cut(s) 130, 714, 1182, 1216
BstMAI GTCTC 3 cut(s) 602, 947, 1137
BstMBI GATC 4 cut(s) 127, 711, 1179, 1213
BstMWI GCNNNNNNNGC 4 cut(s) 207, 216, 772, 775
BstNI CCWGG 2 cut(s) 14, 207
BstPAI GACNNNNGTC 1 cut(s) 1129
BstPI GGTNACC 1 cut(s) 643
BstSCI CCNGG 2 cut(s) 12, 205
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 4 cut(s) 188, 735, 753, 1062
BstX2I RGATCY 1 cut(s) 711
BstYI RGATCY 1 cut(s) 711
BsuRI GGCC 5 cut(s) 179, 367, 450, 556, 632
BtsCI GGATG 3 cut(s) 149, 430, 1037
BtsI GCAGTG 1 cut(s) 945
BtsIMutI CAGTG 2 cut(s) 338, 945
BtuMI TCGCGA 1 cut(s) 92
CaiI CAGNNNCTG 2 cut(s) 611, 1135
CciI TCATGA 2 cut(s) 78, 652
Cfr13I GGNCC 1 cut(s) 631
CseI GACGC 1 cut(s) 572
Csp6I GTAC 1 cut(s) 550
CviAII CATG 7 cut(s) 79, 175, 653, 772, 902, 1108, 1143
CviQI GTAC 1 cut(s) 550
DdeI CTNAG 3 cut(s) 369, 600, 890
DpnI GATC 4 cut(s) 129, 713, 1181, 1215
DpnII GATC 4 cut(s) 127, 711, 1179, 1213
DriI GACNNNNNGTC 2 cut(s) 1116, 1171
EaeI YGGCCR 1 cut(s) 177
Eam1105I GACNNNNNGTC 2 cut(s) 1116, 1171
Eco147I AGGCCT 3 cut(s) 367, 450, 556
Eco24I GRGCYC 1 cut(s) 601
Eco31I GGTCTC 1 cut(s) 947
Eco57I CTGAAG 3 cut(s) 566, 633, 1030
Eco88I CYCGRG 4 cut(s) 419, 1114, 1169, 1205
Eco91I GGTNACC 1 cut(s) 643
EcoO65I GGTNACC 1 cut(s) 643
EcoRI GAATTC 1 cut(s) 471
EcoRII CCWGG 2 cut(s) 12, 205
EcoT38I GRGCYC 1 cut(s) 601
FaeI CATG 7 cut(s) 82, 178, 656, 775, 905, 1111, 1146
FalI AAGNNNNNCTT 4 cut(s) 807, 839, 918, 950
FaqI GGGAC 2 cut(s) 1104, 1159
FatI CATG 7 cut(s) 78, 174, 652, 771, 901, 1107, 1142
FauNDI CATATG 1 cut(s) 410
FblI GTMKAC 2 cut(s) 1003, 1063
Fnu4HI GCNGC 6 cut(s) 202, 749, 767, 776, 1051, 1098
FokI GGATG 3 cut(s) 156, 437, 1024
FriOI GRGCYC 1 cut(s) 601
Fsp4HI GCNGC 6 cut(s) 202, 749, 767, 776, 1051, 1098
FspBI CTAG 4 cut(s) 5, 255, 296, 1199
GluI GCNGC 6 cut(s) 202, 749, 767, 776, 1051, 1098
GsuI CTGGAG 2 cut(s) 382, 1174
HaeIII GGCC 5 cut(s) 179, 367, 450, 556, 632
HgaI GACGC 1 cut(s) 572
Hin1I GRCGYC 1 cut(s) 1126
Hin1II CATG 7 cut(s) 82, 178, 656, 775, 905, 1111, 1146
HincII GTYRAC 5 cut(s) 283, 354, 1004, 1064, 1078
HindII GTYRAC 5 cut(s) 283, 354, 1004, 1064, 1078
HindIII AAGCTT 1 cut(s) 816
HinfI GANTC 9 cut(s) 30, 94, 123, 236, 310, 402, 800, 1117, 1172
HphI GGTGA 3 cut(s) 987, 1047, 1061
Hpy166II GTNNAC 6 cut(s) 283, 354, 416, 1004, 1064, 1078
Hpy188I TCNGA 7 cut(s) 159, 546, 799, 920, 1105, 1137, 1241
Hpy188III TCNNGA 9 cut(s) 69, 79, 91, 296, 361, 535, 653, 1191, 1199
Hpy8I GTNNAC 6 cut(s) 283, 354, 416, 1004, 1064, 1078
Hpy99I CGWCG 2 cut(s) 1065, 1128
HpyAV CCTTC 7 cut(s) 195, 440, 571, 608, 724, 973, 1051
HpyCH4IV ACGT 4 cut(s) 277, 356, 742, 1126
HpyCH4V TGCA 5 cut(s) 338, 699, 723, 950, 1229
HpyF10VI GCNNNNNNNGC 4 cut(s) 207, 216, 772, 775
HpyF3I CTNAG 3 cut(s) 369, 600, 890
HpySE526I ACGT 4 cut(s) 277, 356, 742, 1126
Hsp92I GRCGYC 1 cut(s) 1126
Hsp92II CATG 7 cut(s) 82, 178, 656, 775, 905, 1111, 1146
Kzo9I GATC 4 cut(s) 127, 711, 1179, 1213
LmnI GCTCC 3 cut(s) 580, 690, 914
Lsp1109I GCAGC 4 cut(s) 188, 735, 753, 1062
LweI GCATC 3 cut(s) 310, 415, 528
MaeI CTAG 4 cut(s) 5, 255, 296, 1199
MaeII ACGT 4 cut(s) 277, 356, 742, 1126
MaeIII GTNAC 1 cut(s) 643
MalI GATC 4 cut(s) 129, 713, 1181, 1215
MbiI CCGCTC 1 cut(s) 650
MboI GATC 4 cut(s) 127, 711, 1179, 1213
MboII GAAGA 7 cut(s) 398, 452, 480, 586, 773, 846, 1036
MfeI CAATTG 2 cut(s) 504, 666
MflI RGATCY 1 cut(s) 711
MhlI GDGCHC 2 cut(s) 377, 601
MluCI AATT 6 cut(s) 35, 39, 471, 504, 666, 951
MlyI GAGTC 4 cut(s) 39, 245, 1126, 1181
MmeI TCCRAC 1 cut(s) 1128
MseI TTAA 1 cut(s) 38
MspR9I CCNGG 2 cut(s) 14, 207
MunI CAATTG 2 cut(s) 504, 666
Mva1269I GAATGC 1 cut(s) 291
MvaI CCWGG 2 cut(s) 14, 207
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 4 cut(s) 207, 216, 772, 775
NdeI CATATG 1 cut(s) 410
NdeII GATC 4 cut(s) 127, 711, 1179, 1213
NlaIII CATG 7 cut(s) 82, 178, 656, 775, 905, 1111, 1146
NlaIV GGNNCC 2 cut(s) 152, 686
NruI TCGCGA 1 cut(s) 92
NspV TTCGAA 1 cut(s) 1028
PaeR7I CTCGAG 1 cut(s) 1205
PagI TCATGA 2 cut(s) 78, 652
PceI AGGCCT 3 cut(s) 367, 450, 556
PctI GAATGC 1 cut(s) 291
PfeI GAWTC 5 cut(s) 94, 123, 310, 402, 800
PflFI GACNNNGTC 1 cut(s) 1008
PflMI CCANNNNNTGG 1 cut(s) 640
PkrI GCNGC 6 cut(s) 203, 750, 768, 777, 1052, 1099
PleI GAGTC 4 cut(s) 38, 244, 1125, 1180
PpsI GAGTC 4 cut(s) 38, 244, 1125, 1180
Ppu21I YACGTR 1 cut(s) 278
PshAI GACNNNNGTC 1 cut(s) 1129
PshBI ATTAAT 1 cut(s) 38
Psp6I CCWGG 2 cut(s) 12, 205
PspEI GGTNACC 1 cut(s) 643
PspGI CCWGG 2 cut(s) 12, 205
PspN4I GGNNCC 2 cut(s) 152, 686
PspPI GGNCC 1 cut(s) 631
PspXI VCTCGAGB 1 cut(s) 1205
PstNI CAGNNNCTG 2 cut(s) 611, 1135
PsuI RGATCY 1 cut(s) 711
PsyI GACNNNGTC 1 cut(s) 1008
RruI TCGCGA 1 cut(s) 92
RsaI GTAC 1 cut(s) 551
RsaNI GTAC 1 cut(s) 550
SalI GTCGAC 2 cut(s) 1002, 1062
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 6 cut(s) 202, 749, 767, 776, 1051, 1098
Sau3AI GATC 4 cut(s) 127, 711, 1179, 1213
Sau96I GGNCC 1 cut(s) 631
SchI GAGTC 4 cut(s) 39, 245, 1126, 1181
ScrFI CCNGG 2 cut(s) 14, 207
SduI GDGCHC 2 cut(s) 377, 601
SfaNI GCATC 3 cut(s) 310, 415, 528
Sfr274I CTCGAG 1 cut(s) 1205
SfuI TTCGAA 1 cut(s) 1028
SlaI CTCGAG 1 cut(s) 1205
SmlI CTYRAG 1 cut(s) 1205
SmoI CTYRAG 1 cut(s) 1205
Sse9I AATT 6 cut(s) 35, 39, 471, 504, 666, 951
SseBI AGGCCT 3 cut(s) 367, 450, 556
SsiI CCGC 4 cut(s) 289, 648, 776, 1098
SspI AATATT 1 cut(s) 331
SspMI CTAG 4 cut(s) 5, 255, 296, 1199
StuI AGGCCT 3 cut(s) 367, 450, 556
StyD4I CCNGG 2 cut(s) 12, 205
TaiI ACGT 4 cut(s) 280, 359, 745, 1129
TaqI TCGA 7 cut(s) 33, 61, 126, 1003, 1028, 1063, 1206
TaqII GACCGA 1 cut(s) 176
TasI AATT 6 cut(s) 35, 39, 471, 504, 666, 951
TatI WGTACW 1 cut(s) 549
TauI GCSGC 2 cut(s) 778, 1100
TfiI GAWTC 5 cut(s) 94, 123, 310, 402, 800
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TscAI CASTG 2 cut(s) 345, 952
TseI GCWGC 4 cut(s) 201, 748, 766, 1050
TspDTI ATGAA 5 cut(s) 67, 453, 459, 918, 969
TspRI CASTG 2 cut(s) 345, 952
Tth111I GACNNNGTC 1 cut(s) 1008
Van91I CCANNNNNTGG 1 cut(s) 640
VspI ATTAAT 1 cut(s) 38
XapI RAATTY 1 cut(s) 471
XbaI TCTAGA 2 cut(s) 295, 1198
XhoI CTCGAG 1 cut(s) 1205
XmiI GTMKAC 2 cut(s) 1003, 1063
XspI CTAG 4 cut(s) 5, 255, 296, 1199
ZraI GACGTC 1 cut(s) 1127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.