60S ribosomal Protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G12990 AT3G12990 AT3G12990 AT3G12990 AT3G60500 AT3G60500 AT3G60500 AT3G60500 |
| fragaria_vesca | FvH4_1g30010 FvH4_1g30010 |
| malus_domestica | MD03G1172100.v1.1 MD11G1189800.v1.1 |
| prunus_persica | Prupe.4G254800_v2.0.a1 Prupe.4G254800_v2.0.a1 Prupe.4G254800_v2.0.a1 |
| pyrus_communis | pycom03g12920 |
| rosa_chinensis | RchiOBHm_Chr2g0134251 RchiOBHm_Chr3g0492251 |
| rosa_laevigata | RLG00000022789 |
| rosa_multiflora | Rmu_sc0000418.1_g000008 Rmu_sc0002530.1_g000013 Rmu_sc0003579.1_g000006 |
| rosa_roxburghii | Rroxscaffold_6G00392470 |
| rosa_rugosa | Rorug02G0315300 Rorug03G0252700 |
| rosa_samantha | Rh2AG367900 Rh2BG374300 Rh2CG351900 Rh2DG391500 Rh3AG302700 Rh3BG338700 Rh3CG335800 Rh3DG337900 |
| rosa_wichuraiana | Rw3G026700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1129 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 640 |
| AccBSI | CCGCTC | 1 cut(s) | 650 |
| AccI | GTMKAC | 2 cut(s) | 1003, 1063 |
| AccII | CGCG | 1 cut(s) | 92 |
| AciI | CCGC | 4 cut(s) | 289, 648, 776, 1098 |
| AclWI | GGATC | 1 cut(s) | 706 |
| AcoI | YGGCCR | 1 cut(s) | 177 |
| AcsI | RAATTY | 1 cut(s) | 471 |
| AcuI | CTGAAG | 3 cut(s) | 566, 633, 1030 |
| AcyI | GRCGYC | 1 cut(s) | 1126 |
| AfaI | GTAC | 1 cut(s) | 551 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 211, 640 |
| AflIII | ACRYGT | 1 cut(s) | 277 |
| AgsI | TTSAA | 5 cut(s) | 22, 69, 436, 535, 592 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1116, 1171 |
| AjnI | CCWGG | 2 cut(s) | 12, 205 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1022, 1054 |
| AluBI | AGCT | 6 cut(s) | 196, 482, 818, 894, 1053, 1210 |
| AluI | AGCT | 6 cut(s) | 196, 482, 818, 894, 1053, 1210 |
| Alw21I | GWGCWC | 1 cut(s) | 377 |
| Alw26I | GTCTC | 3 cut(s) | 602, 947, 1137 |
| AlwI | GGATC | 1 cut(s) | 706 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 611, 1135 |
| Ama87I | CYCGRG | 4 cut(s) | 419, 1114, 1169, 1205 |
| AoxI | GGCC | 5 cut(s) | 177, 365, 448, 554, 630 |
| ApeKI | GCWGC | 4 cut(s) | 201, 748, 766, 1050 |
| ApoI | RAATTY | 1 cut(s) | 471 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 15, 47, 173, 205 |
| AseI | ATTAAT | 1 cut(s) | 38 |
| AspS9I | GGNCC | 1 cut(s) | 631 |
| AsuHPI | GGTGA | 3 cut(s) | 987, 1047, 1061 |
| AsuII | TTCGAA | 1 cut(s) | 1028 |
| AvaI | CYCGRG | 4 cut(s) | 419, 1114, 1169, 1205 |
| BanII | GRGCYC | 1 cut(s) | 601 |
| Bbv12I | GWGCWC | 1 cut(s) | 377 |
| BbvCI | CCTCAGC | 1 cut(s) | 890 |
| BbvI | GCAGC | 4 cut(s) | 188, 735, 753, 1062 |
| BccI | CCATC | 3 cut(s) | 162, 700, 983 |
| BciT130I | CCWGG | 2 cut(s) | 14, 207 |
| BcoDI | GTCTC | 3 cut(s) | 602, 947, 1137 |
| BfaI | CTAG | 4 cut(s) | 5, 255, 296, 1199 |
| BisI | GCNGC | 6 cut(s) | 202, 749, 767, 776, 1051, 1098 |
| BlsI | GCNGC | 6 cut(s) | 203, 750, 768, 777, 1052, 1099 |
| Bme1390I | CCNGG | 2 cut(s) | 14, 207 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1116, 1171 |
| BmeT110I | CYCGRG | 4 cut(s) | 419, 1114, 1169, 1205 |
| BmgT120I | GGNCC | 1 cut(s) | 631 |
| BmiI | GGNNCC | 2 cut(s) | 152, 686 |
| BmrFI | CCNGG | 2 cut(s) | 14, 207 |
| BmrI | ACTGGG | 1 cut(s) | 1229 |
| BmsI | GCATC | 3 cut(s) | 310, 415, 528 |
| BmuI | ACTGGG | 1 cut(s) | 1229 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1129 |
| BpmI | CTGGAG | 2 cut(s) | 382, 1174 |
| Bpu10I | CCTNAGC | 2 cut(s) | 600, 890 |
| Bpu14I | TTCGAA | 1 cut(s) | 1028 |
| BsaAI | YACGTR | 1 cut(s) | 278 |
| BsaBI | GATNNNNATC | 2 cut(s) | 660, 710 |
| BsaHI | GRCGYC | 1 cut(s) | 1126 |
| BsaI | GGTCTC | 1 cut(s) | 947 |
| BsaJI | CCNNGG | 3 cut(s) | 13, 205, 420 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 869, 899 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 211, 640 |
| Bse1I | ACTGG | 2 cut(s) | 345, 1235 |
| Bse8I | GATNNNNATC | 2 cut(s) | 660, 710 |
| BseBI | CCWGG | 2 cut(s) | 14, 207 |
| BseDI | CCNNGG | 3 cut(s) | 13, 205, 420 |
| BseGI | GGATG | 3 cut(s) | 149, 430, 1037 |
| BseJI | GATNNNNATC | 2 cut(s) | 660, 710 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 211, 640 |
| BseMII | CTCAG | 3 cut(s) | 360, 614, 904 |
| BseNI | ACTGG | 2 cut(s) | 345, 1235 |
| BseRI | GAGGAG | 4 cut(s) | 227, 821, 824, 827 |
| BseXI | GCAGC | 4 cut(s) | 188, 735, 753, 1062 |
| BsgI | GTGCAG | 1 cut(s) | 1212 |
| Bsh1236I | CGCG | 1 cut(s) | 92 |
| BshFI | GGCC | 5 cut(s) | 179, 367, 450, 556, 632 |
| BsiHKAI | GWGCWC | 1 cut(s) | 377 |
| BsiHKCI | CYCGRG | 4 cut(s) | 419, 1114, 1169, 1205 |
| BslFI | GGGAC | 2 cut(s) | 1104, 1159 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 211, 640 |
| BsmAI | GTCTC | 3 cut(s) | 602, 947, 1137 |
| BsmFI | GGGAC | 2 cut(s) | 1104, 1159 |
| BsmI | GAATGC | 1 cut(s) | 291 |
| BsnI | GGCC | 5 cut(s) | 179, 367, 450, 556, 632 |
| Bso31I | GGTCTC | 1 cut(s) | 947 |
| BsoBI | CYCGRG | 4 cut(s) | 419, 1114, 1169, 1205 |
| Bsp119I | TTCGAA | 1 cut(s) | 1028 |
| Bsp1286I | GDGCHC | 2 cut(s) | 377, 601 |
| Bsp143I | GATC | 4 cut(s) | 127, 711, 1179, 1213 |
| Bsp68I | TCGCGA | 1 cut(s) | 92 |
| BspACI | CCGC | 4 cut(s) | 289, 648, 776, 1098 |
| BspANI | GGCC | 5 cut(s) | 179, 367, 450, 556, 632 |
| BspCNI | CTCAG | 3 cut(s) | 361, 613, 903 |
| BspFNI | CGCG | 1 cut(s) | 92 |
| BspHI | TCATGA | 2 cut(s) | 78, 652 |
| BspLI | GGNNCC | 2 cut(s) | 152, 686 |
| BspPI | GGATC | 1 cut(s) | 706 |
| BspT104I | TTCGAA | 1 cut(s) | 1028 |
| BspTNI | GGTCTC | 1 cut(s) | 947 |
| BsrBI | CCGCTC | 1 cut(s) | 650 |
| BsrI | ACTGG | 2 cut(s) | 345, 1235 |
| BssECI | CCNNGG | 3 cut(s) | 13, 205, 420 |
| BssMI | GATC | 4 cut(s) | 127, 711, 1179, 1213 |
| BssNI | GRCGYC | 1 cut(s) | 1126 |
| Bst2UI | CCWGG | 2 cut(s) | 14, 207 |
| BstACI | GRCGYC | 1 cut(s) | 1126 |
| BstBAI | YACGTR | 1 cut(s) | 278 |
| BstBI | TTCGAA | 1 cut(s) | 1028 |
| BstDEI | CTNAG | 3 cut(s) | 369, 600, 890 |
| BstEII | GGTNACC | 1 cut(s) | 643 |
| BstF5I | GGATG | 3 cut(s) | 149, 430, 1037 |
| BstFNI | CGCG | 1 cut(s) | 92 |
| BstKTI | GATC | 4 cut(s) | 130, 714, 1182, 1216 |
| BstMAI | GTCTC | 3 cut(s) | 602, 947, 1137 |
| BstMBI | GATC | 4 cut(s) | 127, 711, 1179, 1213 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 207, 216, 772, 775 |
| BstNI | CCWGG | 2 cut(s) | 14, 207 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1129 |
| BstPI | GGTNACC | 1 cut(s) | 643 |
| BstSCI | CCNGG | 2 cut(s) | 12, 205 |
| BstUI | CGCG | 1 cut(s) | 92 |
| BstV1I | GCAGC | 4 cut(s) | 188, 735, 753, 1062 |
| BstX2I | RGATCY | 1 cut(s) | 711 |
| BstYI | RGATCY | 1 cut(s) | 711 |
| BsuRI | GGCC | 5 cut(s) | 179, 367, 450, 556, 632 |
| BtsCI | GGATG | 3 cut(s) | 149, 430, 1037 |
| BtsI | GCAGTG | 1 cut(s) | 945 |
| BtsIMutI | CAGTG | 2 cut(s) | 338, 945 |
| BtuMI | TCGCGA | 1 cut(s) | 92 |
| CaiI | CAGNNNCTG | 2 cut(s) | 611, 1135 |
| CciI | TCATGA | 2 cut(s) | 78, 652 |
| Cfr13I | GGNCC | 1 cut(s) | 631 |
| CseI | GACGC | 1 cut(s) | 572 |
| Csp6I | GTAC | 1 cut(s) | 550 |
| CviAII | CATG | 7 cut(s) | 79, 175, 653, 772, 902, 1108, 1143 |
| CviQI | GTAC | 1 cut(s) | 550 |
| DdeI | CTNAG | 3 cut(s) | 369, 600, 890 |
| DpnI | GATC | 4 cut(s) | 129, 713, 1181, 1215 |
| DpnII | GATC | 4 cut(s) | 127, 711, 1179, 1213 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1116, 1171 |
| EaeI | YGGCCR | 1 cut(s) | 177 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1116, 1171 |
| Eco147I | AGGCCT | 3 cut(s) | 367, 450, 556 |
| Eco24I | GRGCYC | 1 cut(s) | 601 |
| Eco31I | GGTCTC | 1 cut(s) | 947 |
| Eco57I | CTGAAG | 3 cut(s) | 566, 633, 1030 |
| Eco88I | CYCGRG | 4 cut(s) | 419, 1114, 1169, 1205 |
| Eco91I | GGTNACC | 1 cut(s) | 643 |
| EcoO65I | GGTNACC | 1 cut(s) | 643 |
| EcoRI | GAATTC | 1 cut(s) | 471 |
| EcoRII | CCWGG | 2 cut(s) | 12, 205 |
| EcoT38I | GRGCYC | 1 cut(s) | 601 |
| FaeI | CATG | 7 cut(s) | 82, 178, 656, 775, 905, 1111, 1146 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 807, 839, 918, 950 |
| FaqI | GGGAC | 2 cut(s) | 1104, 1159 |
| FatI | CATG | 7 cut(s) | 78, 174, 652, 771, 901, 1107, 1142 |
| FauNDI | CATATG | 1 cut(s) | 410 |
| FblI | GTMKAC | 2 cut(s) | 1003, 1063 |
| Fnu4HI | GCNGC | 6 cut(s) | 202, 749, 767, 776, 1051, 1098 |
| FokI | GGATG | 3 cut(s) | 156, 437, 1024 |
| FriOI | GRGCYC | 1 cut(s) | 601 |
| Fsp4HI | GCNGC | 6 cut(s) | 202, 749, 767, 776, 1051, 1098 |
| FspBI | CTAG | 4 cut(s) | 5, 255, 296, 1199 |
| GluI | GCNGC | 6 cut(s) | 202, 749, 767, 776, 1051, 1098 |
| GsuI | CTGGAG | 2 cut(s) | 382, 1174 |
| HaeIII | GGCC | 5 cut(s) | 179, 367, 450, 556, 632 |
| HgaI | GACGC | 1 cut(s) | 572 |
| Hin1I | GRCGYC | 1 cut(s) | 1126 |
| Hin1II | CATG | 7 cut(s) | 82, 178, 656, 775, 905, 1111, 1146 |
| HincII | GTYRAC | 5 cut(s) | 283, 354, 1004, 1064, 1078 |
| HindII | GTYRAC | 5 cut(s) | 283, 354, 1004, 1064, 1078 |
| HindIII | AAGCTT | 1 cut(s) | 816 |
| HinfI | GANTC | 9 cut(s) | 30, 94, 123, 236, 310, 402, 800, 1117, 1172 |
| HphI | GGTGA | 3 cut(s) | 987, 1047, 1061 |
| Hpy166II | GTNNAC | 6 cut(s) | 283, 354, 416, 1004, 1064, 1078 |
| Hpy188I | TCNGA | 7 cut(s) | 159, 546, 799, 920, 1105, 1137, 1241 |
| Hpy188III | TCNNGA | 9 cut(s) | 69, 79, 91, 296, 361, 535, 653, 1191, 1199 |
| Hpy8I | GTNNAC | 6 cut(s) | 283, 354, 416, 1004, 1064, 1078 |
| Hpy99I | CGWCG | 2 cut(s) | 1065, 1128 |
| HpyAV | CCTTC | 7 cut(s) | 195, 440, 571, 608, 724, 973, 1051 |
| HpyCH4IV | ACGT | 4 cut(s) | 277, 356, 742, 1126 |
| HpyCH4V | TGCA | 5 cut(s) | 338, 699, 723, 950, 1229 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 207, 216, 772, 775 |
| HpyF3I | CTNAG | 3 cut(s) | 369, 600, 890 |
| HpySE526I | ACGT | 4 cut(s) | 277, 356, 742, 1126 |
| Hsp92I | GRCGYC | 1 cut(s) | 1126 |
| Hsp92II | CATG | 7 cut(s) | 82, 178, 656, 775, 905, 1111, 1146 |
| Kzo9I | GATC | 4 cut(s) | 127, 711, 1179, 1213 |
| LmnI | GCTCC | 3 cut(s) | 580, 690, 914 |
| Lsp1109I | GCAGC | 4 cut(s) | 188, 735, 753, 1062 |
| LweI | GCATC | 3 cut(s) | 310, 415, 528 |
| MaeI | CTAG | 4 cut(s) | 5, 255, 296, 1199 |
| MaeII | ACGT | 4 cut(s) | 277, 356, 742, 1126 |
| MaeIII | GTNAC | 1 cut(s) | 643 |
| MalI | GATC | 4 cut(s) | 129, 713, 1181, 1215 |
| MbiI | CCGCTC | 1 cut(s) | 650 |
| MboI | GATC | 4 cut(s) | 127, 711, 1179, 1213 |
| MboII | GAAGA | 7 cut(s) | 398, 452, 480, 586, 773, 846, 1036 |
| MfeI | CAATTG | 2 cut(s) | 504, 666 |
| MflI | RGATCY | 1 cut(s) | 711 |
| MhlI | GDGCHC | 2 cut(s) | 377, 601 |
| MluCI | AATT | 6 cut(s) | 35, 39, 471, 504, 666, 951 |
| MlyI | GAGTC | 4 cut(s) | 39, 245, 1126, 1181 |
| MmeI | TCCRAC | 1 cut(s) | 1128 |
| MseI | TTAA | 1 cut(s) | 38 |
| MspR9I | CCNGG | 2 cut(s) | 14, 207 |
| MunI | CAATTG | 2 cut(s) | 504, 666 |
| Mva1269I | GAATGC | 1 cut(s) | 291 |
| MvaI | CCWGG | 2 cut(s) | 14, 207 |
| MvnI | CGCG | 1 cut(s) | 92 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 207, 216, 772, 775 |
| NdeI | CATATG | 1 cut(s) | 410 |
| NdeII | GATC | 4 cut(s) | 127, 711, 1179, 1213 |
| NlaIII | CATG | 7 cut(s) | 82, 178, 656, 775, 905, 1111, 1146 |
| NlaIV | GGNNCC | 2 cut(s) | 152, 686 |
| NruI | TCGCGA | 1 cut(s) | 92 |
| NspV | TTCGAA | 1 cut(s) | 1028 |
| PaeR7I | CTCGAG | 1 cut(s) | 1205 |
| PagI | TCATGA | 2 cut(s) | 78, 652 |
| PceI | AGGCCT | 3 cut(s) | 367, 450, 556 |
| PctI | GAATGC | 1 cut(s) | 291 |
| PfeI | GAWTC | 5 cut(s) | 94, 123, 310, 402, 800 |
| PflFI | GACNNNGTC | 1 cut(s) | 1008 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 640 |
| PkrI | GCNGC | 6 cut(s) | 203, 750, 768, 777, 1052, 1099 |
| PleI | GAGTC | 4 cut(s) | 38, 244, 1125, 1180 |
| PpsI | GAGTC | 4 cut(s) | 38, 244, 1125, 1180 |
| Ppu21I | YACGTR | 1 cut(s) | 278 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1129 |
| PshBI | ATTAAT | 1 cut(s) | 38 |
| Psp6I | CCWGG | 2 cut(s) | 12, 205 |
| PspEI | GGTNACC | 1 cut(s) | 643 |
| PspGI | CCWGG | 2 cut(s) | 12, 205 |
| PspN4I | GGNNCC | 2 cut(s) | 152, 686 |
| PspPI | GGNCC | 1 cut(s) | 631 |
| PspXI | VCTCGAGB | 1 cut(s) | 1205 |
| PstNI | CAGNNNCTG | 2 cut(s) | 611, 1135 |
| PsuI | RGATCY | 1 cut(s) | 711 |
| PsyI | GACNNNGTC | 1 cut(s) | 1008 |
| RruI | TCGCGA | 1 cut(s) | 92 |
| RsaI | GTAC | 1 cut(s) | 551 |
| RsaNI | GTAC | 1 cut(s) | 550 |
| SalI | GTCGAC | 2 cut(s) | 1002, 1062 |
| SaqAI | TTAA | 1 cut(s) | 38 |
| SatI | GCNGC | 6 cut(s) | 202, 749, 767, 776, 1051, 1098 |
| Sau3AI | GATC | 4 cut(s) | 127, 711, 1179, 1213 |
| Sau96I | GGNCC | 1 cut(s) | 631 |
| SchI | GAGTC | 4 cut(s) | 39, 245, 1126, 1181 |
| ScrFI | CCNGG | 2 cut(s) | 14, 207 |
| SduI | GDGCHC | 2 cut(s) | 377, 601 |
| SfaNI | GCATC | 3 cut(s) | 310, 415, 528 |
| Sfr274I | CTCGAG | 1 cut(s) | 1205 |
| SfuI | TTCGAA | 1 cut(s) | 1028 |
| SlaI | CTCGAG | 1 cut(s) | 1205 |
| SmlI | CTYRAG | 1 cut(s) | 1205 |
| SmoI | CTYRAG | 1 cut(s) | 1205 |
| Sse9I | AATT | 6 cut(s) | 35, 39, 471, 504, 666, 951 |
| SseBI | AGGCCT | 3 cut(s) | 367, 450, 556 |
| SsiI | CCGC | 4 cut(s) | 289, 648, 776, 1098 |
| SspI | AATATT | 1 cut(s) | 331 |
| SspMI | CTAG | 4 cut(s) | 5, 255, 296, 1199 |
| StuI | AGGCCT | 3 cut(s) | 367, 450, 556 |
| StyD4I | CCNGG | 2 cut(s) | 12, 205 |
| TaiI | ACGT | 4 cut(s) | 280, 359, 745, 1129 |
| TaqI | TCGA | 7 cut(s) | 33, 61, 126, 1003, 1028, 1063, 1206 |
| TaqII | GACCGA | 1 cut(s) | 176 |
| TasI | AATT | 6 cut(s) | 35, 39, 471, 504, 666, 951 |
| TatI | WGTACW | 1 cut(s) | 549 |
| TauI | GCSGC | 2 cut(s) | 778, 1100 |
| TfiI | GAWTC | 5 cut(s) | 94, 123, 310, 402, 800 |
| Tru1I | TTAA | 1 cut(s) | 38 |
| Tru9I | TTAA | 1 cut(s) | 38 |
| TscAI | CASTG | 2 cut(s) | 345, 952 |
| TseI | GCWGC | 4 cut(s) | 201, 748, 766, 1050 |
| TspDTI | ATGAA | 5 cut(s) | 67, 453, 459, 918, 969 |
| TspRI | CASTG | 2 cut(s) | 345, 952 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1008 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 640 |
| VspI | ATTAAT | 1 cut(s) | 38 |
| XapI | RAATTY | 1 cut(s) | 471 |
| XbaI | TCTAGA | 2 cut(s) | 295, 1198 |
| XhoI | CTCGAG | 1 cut(s) | 1205 |
| XmiI | GTMKAC | 2 cut(s) | 1003, 1063 |
| XspI | CTAG | 4 cut(s) | 5, 255, 296, 1199 |
| ZraI | GACGTC | 1 cut(s) | 1127 |