Rh2CG351900

Exosome complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0003830
Physical Location & Seq
Reverse (-)
47632969 .. 47634011
1043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG351900.1

Sequence Viewer

Length: 327 bp
ATGGCCGACCCTTCCTTTGAGCTTGGCCGCCCTGGCGAGTCAGTCATCGAGCTTGGCTGCGTTATTGACCGCAGTCTCAGGGAGAGCCGGGCAGTTGATACAGAGTCGCTTTGTATTCTTTCTAGCAAGTTGGTGTGGGCTATACGTGTTGACCTCCACATTCTAGATAGTGGAGGGAATCTTATTGATGTTGCTAATATTGCTGCACTGGCTGGTTTGTTGACGTTCCGGAGGCCTGAGTGCTCATTAAGGGGAGAAAATGTTCAGGGAGTCATCATATGTCCACCCGAGAGACGTCTCACCCTGCTGGAAAGCCTTATTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000184 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016075 GO:0016078 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034473 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070478 GO:0070481 GO:0070651 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071035 GO:0071038 GO:0071042 GO:0071046 GO:0071047 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

108

Amino Acids

11.75

Weight (kDa)

4.91

Isoelectric Point (pI)

65.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 2 - 79 1.2e-11 3' exoribonuclease family, domain 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 298
AccIII TCCGGA 1 cut(s) 228
AciI CCGC 2 cut(s) 28, 70
AcoI YGGCCR 2 cut(s) 3, 25
AcyI GRCGYC 1 cut(s) 295
AflIII ACRYGT 1 cut(s) 145
AjnI CCWGG 1 cut(s) 31
AloI GAACNNNNNNTCC 2 cut(s) 246, 278
AluBI AGCT 2 cut(s) 22, 52
AluI AGCT 2 cut(s) 22, 52
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 3 cut(s) 80, 286, 302
Ama87I CYCGRG 1 cut(s) 287
Aor13HI TCCGGA 1 cut(s) 228
AoxI GGCC 3 cut(s) 3, 25, 233
ApeKI GCWGC 2 cut(s) 57, 203
ArsI GACNNNNNNTTYG 1 cut(s) 31
Asp700I GAANNNNTTC 1 cut(s) 261
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 292
AvaI CYCGRG 1 cut(s) 287
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 2 cut(s) 44, 190
BciT130I CCWGG 1 cut(s) 33
BcnI CCSGG 1 cut(s) 89
BcoDI GTCTC 3 cut(s) 80, 286, 302
BfaI CTAG 2 cut(s) 123, 164
BglI GCCNNNNNGGC 1 cut(s) 33
BisI GCNGC 3 cut(s) 28, 58, 204
BlsI GCNGC 3 cut(s) 29, 59, 205
Bme1390I CCNGG 2 cut(s) 33, 89
BmeT110I CYCGRG 1 cut(s) 287
BmrFI CCNGG 2 cut(s) 33, 89
BoxI GACNNNNGTC 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 89
BsaAI YACGTR 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 295
BsaJI CCNNGG 1 cut(s) 31
BsaWI WCCGGW 1 cut(s) 228
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bse1I ACTGG 1 cut(s) 213
BseAI TCCGGA 1 cut(s) 228
BseBI CCWGG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 31
BseMII CTCAG 2 cut(s) 91, 228
BseNI ACTGG 1 cut(s) 213
BseXI GCAGC 2 cut(s) 44, 190
BsgI GTGCAG 1 cut(s) 189
BshFI GGCC 3 cut(s) 5, 27, 235
BsiHKAI GWGCWC 1 cut(s) 245
BsiHKCI CYCGRG 1 cut(s) 287
BsiSI CCGG 2 cut(s) 88, 229
BsmAI GTCTC 3 cut(s) 80, 286, 302
BsmBI CGTCTC 2 cut(s) 286, 302
BsnI GGCC 3 cut(s) 5, 27, 235
BsoBI CYCGRG 1 cut(s) 287
Bsp1286I GDGCHC 1 cut(s) 245
Bsp13I TCCGGA 1 cut(s) 228
BspACI CCGC 2 cut(s) 28, 70
BspANI GGCC 3 cut(s) 5, 27, 235
BspCNI CTCAG 2 cut(s) 90, 229
BspEI TCCGGA 1 cut(s) 228
BsrI ACTGG 1 cut(s) 213
BssECI CCNNGG 1 cut(s) 31
BssNI GRCGYC 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 33
BstACI GRCGYC 1 cut(s) 295
BstBAI YACGTR 1 cut(s) 146
BstDEI CTNAG 2 cut(s) 77, 237
BstMAI GTCTC 3 cut(s) 80, 286, 302
BstMWI GCNNNNNNNGC 3 cut(s) 33, 200, 209
BstNI CCWGG 1 cut(s) 33
BstPAI GACNNNNGTC 1 cut(s) 72
BstSCI CCNGG 2 cut(s) 31, 87
BstV1I GCAGC 2 cut(s) 44, 190
BsuRI GGCC 3 cut(s) 5, 27, 235
BtsIMutI CAGTG 1 cut(s) 206
DdeI CTNAG 2 cut(s) 77, 237
EaeI YGGCCR 2 cut(s) 3, 25
Eco147I AGGCCT 1 cut(s) 235
Eco88I CYCGRG 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 31
Esp3I CGTCTC 2 cut(s) 286, 302
FaiI YATR 3 cut(s) 143, 278, 280
FauNDI CATATG 1 cut(s) 278
Fnu4HI GCNGC 3 cut(s) 28, 58, 204
Fsp4HI GCNGC 3 cut(s) 28, 58, 204
FspBI CTAG 2 cut(s) 123, 164
GluI GCNGC 3 cut(s) 28, 58, 204
HaeIII GGCC 3 cut(s) 5, 27, 235
HapII CCGG 2 cut(s) 88, 229
Hin1I GRCGYC 1 cut(s) 295
HincII GTYRAC 2 cut(s) 151, 222
HindII GTYRAC 2 cut(s) 151, 222
HinfI GANTC 4 cut(s) 38, 104, 178, 270
HpaII CCGG 2 cut(s) 88, 229
HphI GGTGA 1 cut(s) 292
Hpy166II GTNNAC 3 cut(s) 151, 222, 284
Hpy188III TCNNGA 2 cut(s) 164, 229
Hpy8I GTNNAC 3 cut(s) 151, 222, 284
HpyAV CCTTC 1 cut(s) 21
HpyCH4IV ACGT 3 cut(s) 145, 224, 295
HpyCH4V TGCA 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 200, 209
HpyF3I CTNAG 2 cut(s) 77, 237
HpySE526I ACGT 3 cut(s) 145, 224, 295
Hsp92I GRCGYC 1 cut(s) 295
Kpn2I TCCGGA 1 cut(s) 228
Lsp1109I GCAGC 2 cut(s) 44, 190
MaeI CTAG 2 cut(s) 123, 164
MaeII ACGT 3 cut(s) 145, 224, 295
MhlI GDGCHC 1 cut(s) 245
MlyI GAGTC 3 cut(s) 47, 113, 279
MnlI CCTC 3 cut(s) 164, 167, 225
MroI TCCGGA 1 cut(s) 228
MroXI GAANNNNTTC 1 cut(s) 261
MseI TTAA 1 cut(s) 248
MspI CCGG 2 cut(s) 88, 229
MspR9I CCNGG 2 cut(s) 33, 89
MvaI CCWGG 1 cut(s) 33
MwoI GCNNNNNNNGC 3 cut(s) 33, 200, 209
NciI CCSGG 1 cut(s) 89
NdeI CATATG 1 cut(s) 278
PceI AGGCCT 1 cut(s) 235
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 3 cut(s) 29, 59, 205
PleI GAGTC 3 cut(s) 46, 112, 278
PpsI GAGTC 3 cut(s) 46, 112, 278
Ppu21I YACGTR 1 cut(s) 146
PshAI GACNNNNGTC 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 3 cut(s) 28, 58, 204
SchI GAGTC 3 cut(s) 47, 113, 279
ScrFI CCNGG 2 cut(s) 33, 89
SduI GDGCHC 1 cut(s) 245
SetI ASST 6 cut(s) 24, 54, 148, 156, 227, 298
SseBI AGGCCT 1 cut(s) 235
SsiI CCGC 2 cut(s) 28, 70
SspI AATATT 1 cut(s) 199
SspMI CTAG 2 cut(s) 123, 164
StuI AGGCCT 1 cut(s) 235
StyD4I CCNGG 2 cut(s) 31, 87
TaiI ACGT 3 cut(s) 148, 227, 298
TaqI TCGA 1 cut(s) 48
TauI GCSGC 1 cut(s) 30
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TscAI CASTG 1 cut(s) 213
TseI GCWGC 2 cut(s) 57, 203
TspRI CASTG 1 cut(s) 213
XbaI TCTAGA 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 2 cut(s) 123, 164
ZraI GACGTC 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.