Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003830

Physical Location & Seq

Genomic Coordinates Reverse (-)

56834197 .. 56834449

Gene Structure 253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG391500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGGCCGACCCTTCCTTTGAGCTTGGCTGCCCTGGCGAGTCAGTCATCGAGCTTGGCTGCGTTATTGACTGCGGTCTCAAGGAGAGCAGGGCAGTTGATACAGAGTCGCTTTGTATTCTTTCTAGCAAGTTGGTGTGGGCTATACGTGTTGACCTCCGCATTCTAGATAATGGAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000184 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016075 GO:0016078 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034473 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070478 GO:0070481 GO:0070651 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071035 GO:0071038 GO:0071042 GO:0071046 GO:0071047 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

59

Amino Acids

6.3

Weight (kDa)

4.28

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12990 AT3G12990 AT3G12990 AT3G12990 AT3G60500 AT3G60500 AT3G60500 AT3G60500
fragaria_vesca	FvH4_1g30010 FvH4_1g30010
malus_domestica	MD03G1172100.v1.1 MD11G1189800.v1.1
prunus_persica	Prupe.4G254800_v2.0.a1 Prupe.4G254800_v2.0.a1 Prupe.4G254800_v2.0.a1
pyrus_communis	pycom03g12920
rosa_chinensis	RchiOBHm_Chr2g0134251 RchiOBHm_Chr3g0492251
rosa_laevigata	RLG00000022789
rosa_multiflora	Rmu_sc0000418.1_g000008 Rmu_sc0002530.1_g000013 Rmu_sc0003579.1_g000006
rosa_roxburghii	Rroxscaffold_6G00392470
rosa_rugosa	Rorug02G0315300 Rorug03G0252700
rosa_samantha	Rh2AG367900 Rh2BG374300 Rh2CG351900 Rh2DG391500 Rh3AG302700 Rh3BG338700 Rh3CG335800 Rh3DG337900
rosa_wichuraiana	Rw3G026700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	72, 157
AcoI	YGGCCR	1 cut(s)	3
AflIII	ACRYGT	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	2 cut(s)	22, 52
AluI	AGCT	2 cut(s)	22, 52
Alw26I	GTCTC	1 cut(s)	80
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	27, 57
ArsI	GACNNNNNNTTYG	1 cut(s)	31
BbvI	GCAGC	2 cut(s)	14, 44
BciT130I	CCWGG	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	2 cut(s)	123, 164
BisI	GCNGC	2 cut(s)	28, 58
BlsI	GCNGC	2 cut(s)	29, 59
Bme1390I	CCNGG	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	33
BoxI	GACNNNNGTC	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	146
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	14, 44
BshFI	GGCC	1 cut(s)	5
BsmAI	GTCTC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	159
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	80
BspACI	CCGC	2 cut(s)	72, 157
BspANI	GGCC	1 cut(s)	5
BspTNI	GGTCTC	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	33
BstBAI	YACGTR	1 cut(s)	146
BstMAI	GTCTC	1 cut(s)	80
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstNI	CCWGG	1 cut(s)	33
BstPAI	GACNNNNGTC	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	31
BstV1I	GCAGC	2 cut(s)	14, 44
BsuRI	GGCC	1 cut(s)	5
CviJI	RGCY	6 cut(s)	5, 22, 27, 52, 57, 140
CviKI_1	RGCY	6 cut(s)	5, 22, 27, 52, 57, 140
EaeI	YGGCCR	1 cut(s)	3
Eco31I	GGTCTC	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	31
FaiI	YATR	1 cut(s)	143
Fnu4HI	GCNGC	2 cut(s)	28, 58
Fsp4HI	GCNGC	2 cut(s)	28, 58
FspBI	CTAG	2 cut(s)	123, 164
GluI	GCNGC	2 cut(s)	28, 58
HaeIII	GGCC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	2 cut(s)	38, 104
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	21
HpyCH4IV	ACGT	1 cut(s)	145
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpySE526I	ACGT	1 cut(s)	145
LpnPI	CCDG	3 cut(s)	18, 45, 73
Lsp1109I	GCAGC	2 cut(s)	14, 44
MaeI	CTAG	2 cut(s)	123, 164
MaeII	ACGT	1 cut(s)	145
MlyI	GAGTC	2 cut(s)	47, 113
MnlI	CCTC	2 cut(s)	164, 167
MspR9I	CCNGG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	33
PctI	GAATGC	1 cut(s)	159
PkrI	GCNGC	2 cut(s)	29, 59
PleI	GAGTC	2 cut(s)	46, 112
PpsI	GAGTC	2 cut(s)	46, 112
Ppu21I	YACGTR	1 cut(s)	146
PshAI	GACNNNNGTC	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
SatI	GCNGC	2 cut(s)	28, 58
SchI	GAGTC	2 cut(s)	47, 113
ScrFI	CCNGG	1 cut(s)	33
SetI	ASST	4 cut(s)	24, 54, 148, 156
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
SsiI	CCGC	2 cut(s)	72, 157
SspMI	CTAG	2 cut(s)	123, 164
StyD4I	CCNGG	1 cut(s)	31
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	1 cut(s)	48
TseI	GCWGC	2 cut(s)	27, 57
XbaI	TCTAGA	1 cut(s)	163
XspI	CTAG	2 cut(s)	123, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.