Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003830

Physical Location & Seq

Genomic Coordinates Reverse (-)

23956493 .. 23956828

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0252700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTTGGATCATGTTGGAGCAAATTGTGTTGTTAGATTGGAAGGGAGAATTACAAAGGTGAAATTTGGACGTTGGAAAACTCTCTCTAAGGATGTGTTTTCTATCGATCCTCATGGTCAGTTGCAAGTTCGTTCCTTTGGCACGAACACAGGGAAGAAAGCATGGTCGATGAAAGTTTCAAATAATTTGGTTTGTGGTGTGGTACGTAGTAGAGATGAAGGGGAAAATAGGGAGTTTTTATCTGAAAGGAAGGACTCAAAGGAGGATAGTGTTCCGACTGGGGTTGAGCATATAGGTAAGTCTAAAAGGAGGAGATTACTATATTGTACTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000184 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016075 GO:0016078 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034473 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070478 GO:0070481 GO:0070651 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071035 GO:0071038 GO:0071042 GO:0071046 GO:0071047 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

111

Amino Acids

12.62

Weight (kDa)

9.76

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12990 AT3G12990 AT3G12990 AT3G12990 AT3G60500 AT3G60500 AT3G60500 AT3G60500
fragaria_vesca	FvH4_1g30010 FvH4_1g30010
malus_domestica	MD03G1172100.v1.1 MD11G1189800.v1.1
prunus_persica	Prupe.4G254800_v2.0.a1 Prupe.4G254800_v2.0.a1 Prupe.4G254800_v2.0.a1
pyrus_communis	pycom03g12920
rosa_chinensis	RchiOBHm_Chr2g0134251 RchiOBHm_Chr3g0492251
rosa_laevigata	RLG00000022789
rosa_multiflora	Rmu_sc0000418.1_g000008 Rmu_sc0002530.1_g000013 Rmu_sc0003579.1_g000006
rosa_roxburghii	Rroxscaffold_6G00392470
rosa_rugosa	Rorug02G0315300 Rorug03G0252700
rosa_samantha	Rh2AG367900 Rh2BG374300 Rh2CG351900 Rh2DG391500 Rh3AG302700 Rh3BG338700 Rh3CG335800 Rh3DG337900
rosa_wichuraiana	Rw3G026700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	15, 101
AcsI	RAATTY	1 cut(s)	62
AfaI	GTAC	2 cut(s)	204, 328
AgsI	TTSAA	1 cut(s)	180
AlwI	GGATC	2 cut(s)	15, 101
ApoI	RAATTY	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	70
BmrI	ACTGGG	1 cut(s)	288
BmuI	ACTGGG	1 cut(s)	288
Bsa29I	ATCGAT	1 cut(s)	105
BsaAI	YACGTR	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	283
BseCI	ATCGAT	1 cut(s)	105
BseGI	GGATG	1 cut(s)	97
BseNI	ACTGG	1 cut(s)	283
BseRI	GAGGAG	1 cut(s)	325
BshVI	ATCGAT	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	7, 106
BspDI	ATCGAT	1 cut(s)	105
BspPI	GGATC	2 cut(s)	15, 101
BsrI	ACTGG	1 cut(s)	283
BssMI	GATC	2 cut(s)	7, 106
BstBAI	YACGTR	1 cut(s)	206
BstDEI	CTNAG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	2 cut(s)	10, 109
BstMBI	GATC	2 cut(s)	7, 106
BstSNI	TACGTA	1 cut(s)	206
Bsu15I	ATCGAT	1 cut(s)	105
BsuTUI	ATCGAT	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	97
ClaI	ATCGAT	1 cut(s)	105
Csp6I	GTAC	2 cut(s)	203, 327
CviAII	CATG	3 cut(s)	11, 113, 162
CviQI	GTAC	2 cut(s)	203, 327
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	2 cut(s)	9, 108
DpnII	GATC	2 cut(s)	7, 106
Eco105I	TACGTA	1 cut(s)	206
FaeI	CATG	3 cut(s)	14, 116, 165
FaiI	YATR	6 cut(s)	12, 114, 163, 291, 293, 322
FatI	CATG	3 cut(s)	10, 112, 161
FokI	GGATG	1 cut(s)	104
Hin1II	CATG	3 cut(s)	14, 116, 165
HinfI	GANTC	1 cut(s)	254
HphI	GGTGA	1 cut(s)	70
Hpy188I	TCNGA	2 cut(s)	244, 276
HpyAV	CCTTC	3 cut(s)	35, 212, 244
HpyCH4IV	ACGT	2 cut(s)	70, 205
HpyCH4V	TGCA	1 cut(s)	124
HpyF3I	CTNAG	1 cut(s)	87
HpySE526I	ACGT	2 cut(s)	70, 205
Hsp92II	CATG	3 cut(s)	14, 116, 165
Kzo9I	GATC	2 cut(s)	7, 106
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	2 cut(s)	135, 264
MaeII	ACGT	2 cut(s)	70, 205
MalI	GATC	2 cut(s)	9, 108
MboI	GATC	2 cut(s)	7, 106
MboII	GAAGA	1 cut(s)	166
MluCI	AATT	4 cut(s)	22, 48, 62, 184
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	2 cut(s)	53, 299
MnlI	CCTC	3 cut(s)	120, 256, 303
NdeII	GATC	2 cut(s)	7, 106
NlaIII	CATG	3 cut(s)	14, 116, 165
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
Ppu21I	YACGTR	1 cut(s)	206
RsaI	GTAC	2 cut(s)	204, 328
RsaNI	GTAC	2 cut(s)	203, 327
Sau3AI	GATC	2 cut(s)	7, 106
SchI	GAGTC	1 cut(s)	248
SetI	ASST	4 cut(s)	60, 73, 208, 298
SgeI	CNNG	7 cut(s)	23, 125, 137, 154, 162, 174, 291
SnaBI	TACGTA	1 cut(s)	206
Sse9I	AATT	4 cut(s)	22, 48, 62, 184
TaiI	ACGT	2 cut(s)	73, 208
TaqI	TCGA	2 cut(s)	105, 167
TasI	AATT	4 cut(s)	22, 48, 62, 184
TatI	WGTACW	1 cut(s)	326
TspDTI	ATGAA	2 cut(s)	185, 231
XapI	RAATTY	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.