Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003830

Physical Location & Seq

Genomic Coordinates Forward (+)

54578630 .. 54581685

Gene Structure 3056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG367900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCTAGACTTCCAGGGCTTCAAAATAGGAGTCGGATTAATTAGGGTTAGGGATTTGTGTCGATTTTCAAGAGGCTTCATGATTTTGGTCGCGATTCAGGTTGAGATGACTTTTCGTATTGGATTCGATCATTGGAGATATGGATGTGGGTTCCATCTGACCGAGTTCTCTCACATGGCCGACCCTTCCTTTGAGCTTGGCTGCGTTATTGACCGCGGTCTCAGGGAGAGCAGGGCAGTTGATACAGAGTCGCTTTGTATTCTTTCTAGCAAGTTGGTGTGGGCTATACGTGTTGACCTCCGCATTCTAGATAATGGAGGGATTCTTATTGATGCTACTAATATTGTTGCACTGGCTGGTTTGTTGACGTTCCGGAGGCCTGAGTGCTCATTAGGGGAAGAAAATGGTCAGGGAATCATCATATGTCCACCCGAGATTTGGGAGGTCTATGAGTTGCTCCGACCAAACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000184 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016075 GO:0016078 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034473 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070478 GO:0070481 GO:0070651 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071035 GO:0071038 GO:0071042 GO:0071046 GO:0071047 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

157

Amino Acids

17.79

Weight (kDa)

5.37

Isoelectric Point (pI)

34.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12990 AT3G12990 AT3G12990 AT3G12990 AT3G60500 AT3G60500 AT3G60500 AT3G60500
fragaria_vesca	FvH4_1g30010 FvH4_1g30010
malus_domestica	MD03G1172100.v1.1 MD11G1189800.v1.1
prunus_persica	Prupe.4G254800_v2.0.a1 Prupe.4G254800_v2.0.a1 Prupe.4G254800_v2.0.a1
pyrus_communis	pycom03g12920
rosa_chinensis	RchiOBHm_Chr2g0134251 RchiOBHm_Chr3g0492251
rosa_laevigata	RLG00000022789
rosa_multiflora	Rmu_sc0000418.1_g000008 Rmu_sc0002530.1_g000013 Rmu_sc0003579.1_g000006
rosa_roxburghii	Rroxscaffold_6G00392470
rosa_rugosa	Rorug02G0315300 Rorug03G0252700
rosa_samantha	Rh2AG367900 Rh2BG374300 Rh2CG351900 Rh2DG391500 Rh3AG302700 Rh3BG338700 Rh3CG335800 Rh3DG337900
rosa_wichuraiana	Rw3G026700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	92, 216
AccIII	TCCGGA	1 cut(s)	372
AciI	CCGC	3 cut(s)	214, 216, 301
AcoI	YGGCCR	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	438
AflIII	ACRYGT	2 cut(s)	289, 468
AgsI	TTSAA	2 cut(s)	22, 69
AjnI	CCWGG	1 cut(s)	12
AluBI	AGCT	1 cut(s)	196
AluI	AGCT	1 cut(s)	196
Alw21I	GWGCWC	1 cut(s)	389
Alw26I	GTCTC	1 cut(s)	224
Ama87I	CYCGRG	1 cut(s)	431
Aor13HI	TCCGGA	1 cut(s)	372
AoxI	GGCC	2 cut(s)	177, 377
ApeKI	GCWGC	1 cut(s)	201
ArsI	GACNNNNNNTTYG	4 cut(s)	15, 47, 173, 205
AseI	ATTAAT	1 cut(s)	38
AvaI	CYCGRG	1 cut(s)	431
Bbv12I	GWGCWC	1 cut(s)	389
BbvI	GCAGC	1 cut(s)	188
BccI	CCATC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	14
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	3 cut(s)	5, 267, 308
BisI	GCNGC	1 cut(s)	202
BlsI	GCNGC	1 cut(s)	203
Bme1390I	CCNGG	1 cut(s)	14
BmeT110I	CYCGRG	1 cut(s)	431
BmiI	GGNNCC	1 cut(s)	152
BmrFI	CCNGG	1 cut(s)	14
BmsI	GCATC	1 cut(s)	322
BoxI	GACNNNNGTC	1 cut(s)	216
BsaAI	YACGTR	1 cut(s)	290
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	2 cut(s)	13, 214
BsaWI	WCCGGW	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	1 cut(s)	438
Bse1I	ACTGG	1 cut(s)	357
BseAI	TCCGGA	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	13, 214
BseGI	GGATG	1 cut(s)	149
BseLI	CCNNNNNNNGG	1 cut(s)	438
BseMII	CTCAG	2 cut(s)	235, 372
BseNI	ACTGG	1 cut(s)	357
BseXI	GCAGC	1 cut(s)	188
Bsh1236I	CGCG	2 cut(s)	92, 216
BshFI	GGCC	2 cut(s)	179, 379
BsiHKAI	GWGCWC	1 cut(s)	389
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	1 cut(s)	373
BslI	CCNNNNNNNGG	1 cut(s)	438
BsmAI	GTCTC	1 cut(s)	224
BsmI	GAATGC	1 cut(s)	303
BsnI	GGCC	2 cut(s)	179, 379
Bso31I	GGTCTC	1 cut(s)	224
BsoBI	CYCGRG	1 cut(s)	431
Bsp1286I	GDGCHC	1 cut(s)	389
Bsp13I	TCCGGA	1 cut(s)	372
Bsp143I	GATC	1 cut(s)	127
Bsp68I	TCGCGA	1 cut(s)	92
BspACI	CCGC	3 cut(s)	214, 216, 301
BspANI	GGCC	2 cut(s)	179, 379
BspCNI	CTCAG	2 cut(s)	234, 373
BspEI	TCCGGA	1 cut(s)	372
BspFNI	CGCG	2 cut(s)	92, 216
BspHI	TCATGA	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	152
BspTNI	GGTCTC	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	357
BssECI	CCNNGG	2 cut(s)	13, 214
BssMI	GATC	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	290
BstDEI	CTNAG	2 cut(s)	221, 381
BstDSI	CCRYGG	1 cut(s)	214
BstF5I	GGATG	1 cut(s)	149
BstFNI	CGCG	2 cut(s)	92, 216
BstKTI	GATC	1 cut(s)	130
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	1 cut(s)	127
BstNI	CCWGG	1 cut(s)	14
BstNSI	RCATGY	1 cut(s)	472
BstPAI	GACNNNNGTC	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	12
BstUI	CGCG	2 cut(s)	92, 216
BstV1I	GCAGC	1 cut(s)	188
BsuRI	GGCC	2 cut(s)	179, 379
BtgI	CCRYGG	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	149
BtsIMutI	CAGTG	1 cut(s)	350
BtuMI	TCGCGA	1 cut(s)	92
CciI	TCATGA	1 cut(s)	78
Cfr42I	CCGCGG	1 cut(s)	217
CviAII	CATG	3 cut(s)	79, 175, 469
CviJI	RGCY	8 cut(s)	18, 75, 179, 196, 201, 284, 356, 379
CviKI_1	RGCY	8 cut(s)	18, 75, 179, 196, 201, 284, 356, 379
DdeI	CTNAG	2 cut(s)	221, 381
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
EaeI	YGGCCR	1 cut(s)	177
Eco147I	AGGCCT	1 cut(s)	379
Eco31I	GGTCTC	1 cut(s)	224
Eco88I	CYCGRG	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	12
FaeI	CATG	3 cut(s)	82, 178, 472
FaiI	YATR	8 cut(s)	80, 141, 176, 287, 422, 424, 450, 470
FatI	CATG	3 cut(s)	78, 174, 468
FauNDI	CATATG	1 cut(s)	422
Fnu4HI	GCNGC	1 cut(s)	202
FokI	GGATG	1 cut(s)	156
Fsp4HI	GCNGC	1 cut(s)	202
FspBI	CTAG	3 cut(s)	5, 267, 308
GluI	GCNGC	1 cut(s)	202
HaeIII	GGCC	2 cut(s)	179, 379
HapII	CCGG	1 cut(s)	373
Hin1II	CATG	3 cut(s)	82, 178, 472
HincII	GTYRAC	2 cut(s)	295, 366
HindII	GTYRAC	2 cut(s)	295, 366
HinfI	GANTC	6 cut(s)	30, 94, 123, 248, 322, 414
HpaII	CCGG	1 cut(s)	373
Hpy166II	GTNNAC	3 cut(s)	295, 366, 428
Hpy188I	TCNGA	3 cut(s)	35, 159, 461
Hpy188III	TCNNGA	5 cut(s)	69, 79, 91, 308, 373
Hpy8I	GTNNAC	3 cut(s)	295, 366, 428
HpyAV	CCTTC	1 cut(s)	195
HpyCH4IV	ACGT	2 cut(s)	289, 368
HpyCH4V	TGCA	1 cut(s)	350
HpyF3I	CTNAG	2 cut(s)	221, 381
HpySE526I	ACGT	2 cut(s)	289, 368
Hsp92II	CATG	3 cut(s)	82, 178, 472
Kpn2I	TCCGGA	1 cut(s)	372
KspI	CCGCGG	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	462
LpnPI	CCDG	9 cut(s)	26, 83, 208, 217, 338, 342, 386, 393, 395
Lsp1109I	GCAGC	1 cut(s)	188
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	3 cut(s)	5, 267, 308
MaeII	ACGT	2 cut(s)	289, 368
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	1 cut(s)	410
MhlI	GDGCHC	1 cut(s)	389
MluCI	AATT	1 cut(s)	39
MlyI	GAGTC	2 cut(s)	39, 257
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	5 cut(s)	65, 308, 311, 369, 436
MroI	TCCGGA	1 cut(s)	372
MseI	TTAA	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	216
MspI	CCGG	1 cut(s)	373
MspR9I	CCNGG	1 cut(s)	14
Mva1269I	GAATGC	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	14
MvnI	CGCG	2 cut(s)	92, 216
NdeI	CATATG	1 cut(s)	422
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	3 cut(s)	82, 178, 472
NlaIV	GGNNCC	1 cut(s)	152
NruI	TCGCGA	1 cut(s)	92
NspI	RCATGY	1 cut(s)	472
PagI	TCATGA	1 cut(s)	78
PceI	AGGCCT	1 cut(s)	379
PciI	ACATGT	1 cut(s)	468
PctI	GAATGC	1 cut(s)	303
PfeI	GAWTC	4 cut(s)	94, 123, 322, 414
PkrI	GCNGC	1 cut(s)	203
PleI	GAGTC	2 cut(s)	38, 256
PpsI	GAGTC	2 cut(s)	38, 256
Ppu21I	YACGTR	1 cut(s)	290
PscI	ACATGT	1 cut(s)	468
PshAI	GACNNNNGTC	1 cut(s)	216
PshBI	ATTAAT	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	152
RruI	TCGCGA	1 cut(s)	92
SacII	CCGCGG	1 cut(s)	217
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	1 cut(s)	202
Sau3AI	GATC	1 cut(s)	127
SchI	GAGTC	2 cut(s)	39, 257
ScrFI	CCNGG	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	389
SetI	ASST	6 cut(s)	102, 198, 292, 300, 371, 447
SfaNI	GCATC	1 cut(s)	322
Sfr303I	CCGCGG	1 cut(s)	217
SgrBI	CCGCGG	1 cut(s)	217
Sse9I	AATT	1 cut(s)	39
SseBI	AGGCCT	1 cut(s)	379
SsiI	CCGC	3 cut(s)	214, 216, 301
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	3 cut(s)	5, 267, 308
StuI	AGGCCT	1 cut(s)	379
StyD4I	CCNGG	1 cut(s)	12
TaiI	ACGT	2 cut(s)	292, 371
TaqI	TCGA	2 cut(s)	61, 126
TaqII	GACCGA	1 cut(s)	176
TasI	AATT	1 cut(s)	39
TfiI	GAWTC	4 cut(s)	94, 123, 322, 414
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TscAI	CASTG	1 cut(s)	357
TseI	GCWGC	1 cut(s)	201
TspDTI	ATGAA	1 cut(s)	67
TspRI	CASTG	1 cut(s)	357
VspI	ATTAAT	1 cut(s)	38
XbaI	TCTAGA	1 cut(s)	307
XceI	RCATGY	1 cut(s)	472
XcmI	CCANNNNNNNNNTGG	1 cut(s)	435
XspI	CTAG	3 cut(s)	5, 267, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.