Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003830

Physical Location & Seq

Genomic Coordinates Reverse (-)

52794970 .. 52795222

Gene Structure 253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG374300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGGCCGACCCTTCCTTTGAGCTTGGCTGCCCTGGCGAGTCAGTCATCGAGCTTGGCTGCGTTATTGACTGCGGTCTCAAGGAGAGCAGGGCAGTTGATACAGAGTCGCTTTGTATTCTTTCTAGCAAGTTGGTGTGGGCTATACGTGTTGACCTCCGCATTCTAGATAATGGAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000184 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016075 GO:0016078 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034473 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070478 GO:0070481 GO:0070651 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071035 GO:0071038 GO:0071042 GO:0071046 GO:0071047 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

59

Amino Acids

6.3

Weight (kDa)

4.28

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12990 AT3G12990 AT3G12990 AT3G12990 AT3G60500 AT3G60500 AT3G60500 AT3G60500
fragaria_vesca	FvH4_1g30010 FvH4_1g30010
malus_domestica	MD03G1172100.v1.1 MD11G1189800.v1.1
prunus_persica	Prupe.4G254800_v2.0.a1 Prupe.4G254800_v2.0.a1 Prupe.4G254800_v2.0.a1
pyrus_communis	pycom03g12920
rosa_chinensis	RchiOBHm_Chr2g0134251 RchiOBHm_Chr3g0492251
rosa_laevigata	RLG00000022789
rosa_multiflora	Rmu_sc0000418.1_g000008 Rmu_sc0002530.1_g000013 Rmu_sc0003579.1_g000006
rosa_roxburghii	Rroxscaffold_6G00392470
rosa_rugosa	Rorug02G0315300 Rorug03G0252700
rosa_samantha	Rh2AG367900 Rh2BG374300 Rh2CG351900 Rh2DG391500 Rh3AG302700 Rh3BG338700 Rh3CG335800 Rh3DG337900
rosa_wichuraiana	Rw3G026700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	72, 157
AcoI	YGGCCR	1 cut(s)	3
AflIII	ACRYGT	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	2 cut(s)	22, 52
AluI	AGCT	2 cut(s)	22, 52
Alw26I	GTCTC	1 cut(s)	80
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	27, 57
ArsI	GACNNNNNNTTYG	1 cut(s)	31
BbvI	GCAGC	2 cut(s)	14, 44
BciT130I	CCWGG	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	2 cut(s)	123, 164
BisI	GCNGC	2 cut(s)	28, 58
BlsI	GCNGC	2 cut(s)	29, 59
Bme1390I	CCNGG	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	33
BoxI	GACNNNNGTC	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	146
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	14, 44
BshFI	GGCC	1 cut(s)	5
BsmAI	GTCTC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	159
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	80
BspACI	CCGC	2 cut(s)	72, 157
BspANI	GGCC	1 cut(s)	5
BspTNI	GGTCTC	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	33
BstBAI	YACGTR	1 cut(s)	146
BstMAI	GTCTC	1 cut(s)	80
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstNI	CCWGG	1 cut(s)	33
BstPAI	GACNNNNGTC	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	31
BstV1I	GCAGC	2 cut(s)	14, 44
BsuRI	GGCC	1 cut(s)	5
CviJI	RGCY	6 cut(s)	5, 22, 27, 52, 57, 140
CviKI_1	RGCY	6 cut(s)	5, 22, 27, 52, 57, 140
EaeI	YGGCCR	1 cut(s)	3
Eco31I	GGTCTC	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	31
FaiI	YATR	1 cut(s)	143
Fnu4HI	GCNGC	2 cut(s)	28, 58
Fsp4HI	GCNGC	2 cut(s)	28, 58
FspBI	CTAG	2 cut(s)	123, 164
GluI	GCNGC	2 cut(s)	28, 58
HaeIII	GGCC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	2 cut(s)	38, 104
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	21
HpyCH4IV	ACGT	1 cut(s)	145
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpySE526I	ACGT	1 cut(s)	145
LpnPI	CCDG	3 cut(s)	18, 45, 73
Lsp1109I	GCAGC	2 cut(s)	14, 44
MaeI	CTAG	2 cut(s)	123, 164
MaeII	ACGT	1 cut(s)	145
MlyI	GAGTC	2 cut(s)	47, 113
MnlI	CCTC	2 cut(s)	164, 167
MspR9I	CCNGG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	33
PctI	GAATGC	1 cut(s)	159
PkrI	GCNGC	2 cut(s)	29, 59
PleI	GAGTC	2 cut(s)	46, 112
PpsI	GAGTC	2 cut(s)	46, 112
Ppu21I	YACGTR	1 cut(s)	146
PshAI	GACNNNNGTC	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
SatI	GCNGC	2 cut(s)	28, 58
SchI	GAGTC	2 cut(s)	47, 113
ScrFI	CCNGG	1 cut(s)	33
SetI	ASST	4 cut(s)	24, 54, 148, 156
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
SsiI	CCGC	2 cut(s)	72, 157
SspMI	CTAG	2 cut(s)	123, 164
StyD4I	CCNGG	1 cut(s)	31
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	1 cut(s)	48
TseI	GCWGC	2 cut(s)	27, 57
XbaI	TCTAGA	1 cut(s)	163
XspI	CTAG	2 cut(s)	123, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.